Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47396 * 91.93712 * 3 2 1 5 5 H 1.48510 * 109.46947 * 211.93580 * 3 2 1 6 6 H 1.48500 * 109.47387 * 331.92899 * 3 2 1 7 7 C 1.37876 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99465 * 20.84846 * 7 2 1 9 9 C 1.50698 * 120.00363 * 200.85320 * 7 2 1 10 10 C 1.53008 * 115.54858 * 33.51759 * 9 7 2 11 11 O 1.45192 * 109.46796 * 174.58579 * 10 9 7 12 12 C 1.34764 * 116.99721 * 184.90407 * 11 10 9 13 13 O 1.21522 * 120.00055 * 5.08488 * 12 11 10 14 14 C 1.47284 * 119.99878 * 185.07905 * 12 11 10 15 15 C 1.38126 * 126.42725 * 5.04788 * 14 12 11 16 16 N 1.34225 * 107.40708 * 179.83223 * 15 14 12 17 17 H 0.96996 * 125.74246 * 180.13518 * 16 15 14 18 18 N 1.39933 * 108.51479 * 0.42550 * 16 15 14 19 19 C 1.30438 * 108.91450 * 359.72867 * 18 16 15 20 20 C 1.50697 * 125.98899 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46768 * 60.00416 * 20 19 18 22 22 C 1.53004 * 109.46813 * 179.97438 * 21 20 19 23 23 C 1.53010 * 109.46930 * 60.00006 * 22 21 20 24 24 C 1.52997 * 109.46915 * 299.99694 * 23 22 21 25 25 C 1.52996 * 109.47322 * 300.00340 * 20 19 18 26 26 C 1.52997 * 117.49972 * 247.84970 * 9 7 2 27 27 C 1.52994 * 117.49936 * 179.18654 * 9 7 2 28 28 H 0.97001 * 119.99896 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46744 * 294.58400 * 10 9 7 30 30 H 1.08997 * 109.46744 * 54.58507 * 10 9 7 31 31 H 1.08000 * 126.29451 * 359.95311 * 15 14 12 32 32 H 1.09000 * 109.46771 * 179.97438 * 20 19 18 33 33 H 1.08999 * 109.47279 * 299.99193 * 21 20 19 34 34 H 1.09003 * 109.47205 * 60.00211 * 21 20 19 35 35 H 1.08998 * 109.47370 * 300.00076 * 22 21 20 36 36 H 1.08996 * 109.47077 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46917 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47037 * 59.99865 * 23 22 21 39 39 H 1.08998 * 109.47408 * 299.99945 * 24 23 22 40 40 H 1.09002 * 109.47043 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46947 * 299.99562 * 25 20 19 42 42 H 1.08999 * 109.47540 * 60.00307 * 25 20 19 43 43 H 1.09006 * 117.49618 * 359.97438 * 26 9 7 44 44 H 1.08994 * 117.50185 * 145.01536 * 26 9 7 45 45 H 1.08998 * 117.50029 * 214.97809 * 27 9 7 46 46 H 1.09001 * 117.49881 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5377 2.0228 1.3993 5 1 3.5257 1.4523 -0.7407 6 1 1.4268 2.6641 -0.6588 7 6 2.0046 -1.1940 0.0005 8 1 1.5176 -2.0989 -0.3320 9 6 3.4376 -1.2366 0.4651 10 6 3.7974 -0.2584 1.5853 11 8 5.1631 -0.4975 2.0163 12 6 5.6054 0.2152 3.0711 13 8 4.8436 0.9459 3.6731 14 6 7.0122 0.1085 3.4942 15 6 8.0100 -0.5995 2.8531 16 7 9.1384 -0.4331 3.5607 17 1 10.0037 -0.8149 3.3453 18 7 8.8550 0.3784 4.6649 19 6 7.5929 0.7066 4.6355 20 6 6.8792 1.5714 5.6424 21 6 7.5315 2.9548 5.6799 22 6 6.8065 3.8330 6.7017 23 6 6.8993 3.1876 8.0859 24 6 6.2469 1.8042 8.0483 25 6 6.9725 0.9258 7.0263 26 6 4.5113 -1.5367 -0.5827 27 6 4.1418 -2.5948 0.4600 28 1 -0.4850 0.8401 -0.0004 29 1 3.7059 0.7638 1.2183 30 1 3.1200 -0.4045 2.4266 31 1 7.9025 -1.1787 1.9480 32 1 5.8318 1.6715 5.3576 33 1 8.5790 2.8550 5.9644 34 1 7.4650 3.4148 4.6939 35 1 5.7591 3.9328 6.4168 36 1 7.2709 4.8187 6.7281 37 1 6.3831 3.8135 8.8139 38 1 7.9466 3.0878 8.3707 39 1 5.1996 1.9040 7.7634 40 1 6.3126 1.3446 9.0344 41 1 6.5077 -0.0598 6.9996 42 1 8.0199 0.8260 7.3109 43 1 4.1812 -1.7037 -1.6080 44 1 5.4741 -1.0376 -0.4738 45 1 4.8618 -2.7914 1.2543 46 1 3.5686 -3.4577 0.1209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118389870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -23.715087 kcal Electronic energy + Delta-G solvation = -27212.778056 eV Core-core repulsion = 23489.404061 eV Total energy + Delta-G solvation = -3723.373994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64602 -41.08176 -39.30466 -38.71375 -36.80689 -34.42305 -33.92847 -31.86183 -31.67298 -30.62463 -29.39314 -27.31638 -24.57746 -24.52616 -23.49772 -23.03426 -22.05821 -21.06830 -20.81927 -20.27497 -19.45385 -18.57977 -18.34376 -17.56137 -16.85879 -16.57013 -16.53183 -15.86479 -15.55503 -15.24176 -15.16253 -15.05375 -14.98584 -14.64979 -14.47765 -14.28945 -13.51190 -13.48436 -13.14668 -13.11749 -13.01336 -12.73069 -12.36896 -12.29409 -12.21167 -12.05372 -12.04880 -11.89392 -11.61126 -11.46560 -11.25643 -11.24584 -11.09546 -10.98778 -10.56919 -10.50412 -10.29695 -10.02292 -8.46775 -6.36231 0.29990 0.89207 1.22817 1.28411 1.36651 1.52384 1.90821 2.07266 2.21787 2.74215 3.28272 3.41128 3.50746 3.82959 3.85262 3.97018 3.99140 4.05569 4.15866 4.17706 4.25504 4.35341 4.40281 4.48834 4.54169 4.57555 4.58195 4.60441 4.71979 4.81114 4.88494 4.98809 5.06294 5.09080 5.14851 5.23526 5.23952 5.26408 5.28823 5.36995 5.38219 5.50300 5.59580 5.59803 5.63866 6.18069 6.22270 6.42444 6.60662 6.79464 7.19809 8.69530 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003901 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.341264 B = 7175.351230 C = 8335.555660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.036 3.964 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.243 1.243 6 H -0.287 1.287 7 C -0.496 4.496 8 H 0.050 0.950 9 C -0.032 4.032 10 C 0.108 3.892 11 O -0.342 6.342 12 C 0.531 3.469 13 O -0.548 6.548 14 C -0.313 4.313 15 C 0.167 3.833 16 N -0.439 5.439 17 H 0.466 0.534 18 N -0.303 5.303 19 C 0.140 3.860 20 C -0.029 4.029 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.099 4.099 26 C -0.180 4.180 27 C -0.157 4.157 28 H 0.271 0.729 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.166 2.348 11.847 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.165 4.165 3 Si 0.744 3.256 4 H -0.202 1.202 5 H -0.167 1.167 6 H -0.213 1.213 7 C -0.533 4.533 8 H 0.069 0.931 9 C -0.033 4.033 10 C 0.034 3.966 11 O -0.258 6.258 12 C 0.378 3.622 13 O -0.440 6.440 14 C -0.326 4.326 15 C 0.012 3.988 16 N -0.145 5.145 17 H 0.315 0.685 18 N -0.124 5.124 19 C -0.028 4.028 20 C -0.050 4.050 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.138 4.138 26 C -0.217 4.217 27 C -0.194 4.194 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.869 2.745 12.619 27.138 hybrid contribution -1.135 0.457 -0.915 1.527 sum 22.734 3.202 11.704 25.770 Atomic orbital electron populations 1.70082 1.07994 1.28518 1.49236 1.25608 0.94994 1.02003 0.93879 0.86399 0.80179 0.80471 0.78540 1.20240 1.16690 1.21342 1.20413 0.94087 0.95008 1.43782 0.93141 1.19226 0.92558 0.96300 0.95256 1.22827 0.78514 0.98448 0.96766 1.86449 1.32241 1.61082 1.46042 1.20636 0.88035 0.76202 0.77348 1.90759 1.58142 1.39567 1.55518 1.19442 0.91618 1.17099 1.04475 1.23793 0.84537 0.93702 0.96780 1.46178 1.11542 1.38326 1.18438 0.68461 1.77096 1.14956 1.13494 1.06871 1.22503 0.90739 0.95434 0.94154 1.20046 0.99324 0.93352 0.92231 1.21457 0.99937 0.93158 0.99193 1.21550 1.00253 0.98862 0.95056 1.21524 1.01524 0.95643 0.96480 1.21555 0.99182 0.95997 0.98969 1.21472 1.01482 0.98146 0.92666 1.23112 0.99477 1.04009 0.95108 1.22799 1.02823 0.91839 1.01939 0.91965 0.93472 0.92815 0.75069 0.89566 0.90784 0.93334 0.93013 0.90414 0.90823 0.90970 0.92960 0.90333 0.93131 0.90787 0.90015 0.88294 0.87716 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.04 2.09 5.35 84.65 0.45 2.55 16 3 Si 0.92 45.37 24.41 68.60 1.67 47.05 16 4 H -0.28 -13.83 6.60 99.48 0.66 -13.18 16 5 H -0.24 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.50 -28.08 9.52 25.60 0.24 -27.84 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 9 C -0.03 -1.51 1.84 -52.93 -0.10 -1.60 16 10 C 0.11 4.93 4.47 71.98 0.32 5.25 16 11 O -0.34 -12.82 8.32 -56.75 -0.47 -13.29 16 12 C 0.53 19.52 7.94 70.20 0.56 20.07 16 13 O -0.55 -23.82 14.29 19.76 0.28 -23.54 16 14 C -0.31 -8.75 6.12 -20.16 -0.12 -8.87 16 15 C 0.17 2.92 11.86 84.30 1.00 3.92 16 16 N -0.44 -6.38 7.28 -56.28 -0.41 -6.79 16 17 H 0.47 2.61 8.96 -213.43 -1.91 0.70 16 18 N -0.30 -6.71 12.63 -46.65 -0.59 -7.30 16 19 C 0.14 3.72 5.77 43.53 0.25 3.97 16 20 C -0.03 -0.77 2.53 -11.54 -0.03 -0.80 16 21 C -0.10 -2.24 5.19 30.60 0.16 -2.08 16 22 C -0.12 -2.32 5.92 30.60 0.18 -2.14 16 23 C -0.11 -1.88 5.92 30.60 0.18 -1.70 16 24 C -0.12 -2.28 5.92 30.61 0.18 -2.10 16 25 C -0.10 -2.21 5.19 30.61 0.16 -2.05 16 26 C -0.18 -6.89 9.67 30.62 0.30 -6.59 16 27 C -0.16 -5.96 9.63 30.62 0.29 -5.67 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.05 2.29 2.99 -2.39 -0.01 2.28 16 30 H 0.05 2.66 7.97 -2.39 -0.02 2.64 16 31 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.09 2.84 5.63 -2.39 -0.01 2.83 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.10 3.27 7.83 -2.39 -0.02 3.25 16 45 H 0.10 3.43 7.49 -2.39 -0.02 3.42 16 46 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -72.97 367.55 3.84 -69.13 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.97 Total: 16.82 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.03 Total: -25.68 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.70 Total: -70.49 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.19 Total: -36.83 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.05 kcal Total: -72.97 3.84 -69.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118389870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.410 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds