Wall clock time and date at job start Tue Mar 31 2020 12:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47436 * 180.02562 * 20 19 17 22 22 C 1.34508 * 125.79171 * 89.99427 * 21 20 19 23 23 C 1.41386 * 106.84073 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.84100 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41715 * 359.73323 * 24 23 22 26 26 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 27 27 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 29 29 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 30 30 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 31 31 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 32 32 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 33 33 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 34 34 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 35 35 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 36 36 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 37 37 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 38 38 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 39 39 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 40 40 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 41 41 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 42 42 H 1.08000 * 126.58004 * 0.04107 * 22 21 20 43 43 H 1.08000 * 126.57561 * 179.97438 * 23 22 21 44 44 H 1.07999 * 125.78879 * 180.02562 * 24 23 22 45 45 H 1.08990 * 113.66878 * 265.09053 * 26 12 11 46 46 H 1.09000 * 113.66430 * 36.05678 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6043 -13.3096 2.0809 22 6 5.3844 -13.8915 1.1525 23 6 5.1350 -15.2815 1.2208 24 6 4.2169 -15.4658 2.1865 25 8 3.9032 -14.2684 2.7077 26 6 1.0599 -6.8787 1.0890 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0653 -3.5642 -0.4088 30 1 1.5973 -5.1293 -1.5917 31 1 0.1782 -4.6962 -0.5422 32 1 1.1318 -4.1478 1.9482 33 1 2.9356 -4.3598 1.9065 34 1 2.9951 -7.1043 -0.6938 35 1 3.9799 -6.1903 0.5299 36 1 2.8043 -7.2489 2.4010 37 1 1.9071 -9.3338 0.4669 38 1 2.4897 -11.6516 1.7120 39 1 3.7020 -11.3441 0.4455 40 1 5.4970 -11.3729 2.1554 41 1 4.2853 -11.6805 3.4225 42 1 6.0700 -13.3928 0.4835 43 1 5.5931 -16.0481 0.6135 44 1 3.8056 -16.4159 2.4939 45 1 0.4691 -6.6421 1.9737 46 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120624387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:06 Heat of formation + Delta-G solvation = 22.695528 kcal Electronic energy + Delta-G solvation = -25088.870348 eV Core-core repulsion = 21367.508869 eV Total energy + Delta-G solvation = -3721.361479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.92239 -40.60708 -39.33429 -35.95813 -34.40290 -33.66685 -33.14813 -32.17215 -29.68064 -29.06985 -25.78163 -25.33013 -25.18101 -24.01357 -22.25023 -22.11146 -20.80709 -20.52408 -20.01632 -18.00497 -17.71820 -17.04482 -17.02460 -16.49051 -16.11483 -15.96556 -15.18977 -14.89810 -14.65072 -14.24771 -14.12902 -13.70064 -13.42555 -13.19268 -13.06457 -12.86670 -12.71824 -12.58134 -12.51768 -12.35216 -11.92158 -11.62747 -11.49844 -11.27349 -11.19013 -10.85559 -10.76710 -10.31943 -10.29021 -10.06766 -9.96983 -9.79348 -9.68716 -9.38588 -9.09650 -8.85503 -8.82334 -6.94097 -5.77191 -3.05466 1.34328 2.23738 2.41662 2.58899 3.05847 3.43567 3.49572 3.51624 4.22145 4.46583 4.54071 4.57610 4.58369 4.67354 4.69076 4.70947 4.79531 4.84456 4.90881 5.10776 5.29518 5.39510 5.44688 5.46109 5.54557 5.57038 5.61567 5.70289 5.78159 5.80865 5.91468 5.94760 5.97820 6.10670 6.13557 6.19945 6.25682 6.36903 6.42378 6.51087 6.65782 6.77436 6.94122 7.14719 7.32518 7.71846 8.02463 8.41775 9.52910 10.11648 10.45994 11.45398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047296 B = 0.001671 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.875194 B =16755.560296 C =16926.440672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.124 4.124 15 C 0.122 3.878 16 N -0.719 5.719 17 C 0.513 3.487 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.025 4.025 21 C -0.009 4.009 22 C -0.210 4.210 23 C -0.214 4.214 24 C -0.045 4.045 25 O -0.176 6.176 26 C -0.131 4.131 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.202 0.798 45 H 0.073 0.927 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -31.563 1.271 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.102 4.102 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.369 5.369 17 C 0.299 3.701 18 O -0.417 6.417 19 C -0.179 4.179 20 C -0.062 4.062 21 C -0.059 4.059 22 C -0.230 4.230 23 C -0.233 4.233 24 C -0.112 4.112 25 O -0.072 6.072 26 C -0.169 4.169 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.092 0.908 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.401 -30.959 2.095 31.683 hybrid contribution -0.096 0.445 -0.552 0.716 sum 6.305 -30.514 1.543 31.196 Atomic orbital electron populations 1.69671 1.05134 1.25562 1.57786 1.24757 0.95519 0.97755 1.02959 0.86124 0.78838 0.84120 0.77166 1.20520 1.21883 1.21870 1.19372 0.91141 0.84273 1.42519 0.91035 1.42424 1.05733 0.99937 1.87041 1.21541 0.95271 0.84862 0.92714 1.23267 1.00566 0.97229 0.96411 1.22092 0.96219 0.92412 0.99525 1.23603 1.01344 0.93605 0.99747 1.23138 0.98335 0.96307 0.98522 1.22630 0.97681 0.77750 1.00121 1.46088 1.39080 1.09139 1.42582 1.20577 0.80063 0.88637 0.80811 1.90729 1.41704 1.75458 1.33847 1.21679 1.01461 0.92380 1.02335 1.19847 1.00715 0.83997 1.01676 1.22478 0.96224 0.91092 0.96116 1.21648 1.04423 0.94144 1.02740 1.21860 1.02223 0.96884 1.02320 1.24046 1.01287 0.87763 0.98154 1.84033 1.55214 1.15363 1.52622 1.23176 0.95558 0.96988 1.01191 0.93560 0.78132 0.90795 0.92290 0.90224 0.90132 0.92521 0.89932 0.90933 0.86806 0.76574 0.88491 0.88350 0.87906 0.89145 0.83400 0.83483 0.78155 0.90842 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.91 5.40 -52.47 -0.28 -18.19 16 10 C 0.17 3.32 4.48 -66.95 -0.30 3.02 16 11 C -0.14 -2.17 7.59 -26.28 -0.20 -2.37 16 12 C -0.10 -1.39 1.11 -154.71 -0.17 -1.56 16 13 C -0.14 -2.44 7.64 -26.28 -0.20 -2.64 16 14 C -0.12 -1.50 7.64 -26.28 -0.20 -1.70 16 15 C 0.12 1.38 4.24 -66.95 -0.28 1.09 16 16 N -0.72 -6.37 5.35 -52.85 -0.28 -6.65 16 17 C 0.51 5.12 7.83 -10.98 -0.09 5.04 16 18 O -0.54 -7.66 15.58 5.56 0.09 -7.57 16 19 C -0.14 -0.92 5.68 -27.88 -0.16 -1.08 16 20 C -0.02 -0.19 5.04 -27.88 -0.14 -0.33 16 21 C -0.01 -0.07 6.58 -35.63 -0.23 -0.31 16 22 C -0.21 -1.62 10.81 -39.70 -0.43 -2.05 16 23 C -0.21 -1.47 10.91 -39.70 -0.43 -1.91 16 24 C -0.04 -0.30 12.09 29.42 0.36 0.06 16 25 O -0.18 -1.56 10.65 5.71 0.06 -1.50 16 26 C -0.13 -1.47 7.59 -26.28 -0.20 -1.67 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.21 7.92 -40.82 -0.32 9.89 16 29 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 1.52 7.47 -51.92 -0.39 1.13 16 37 H 0.40 2.41 8.73 -40.82 -0.36 2.05 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.20 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -33.44 385.71 -9.20 -42.64 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.37 Total: 9.32 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -2.93 Total: -13.80 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.16 Total: -52.34 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.15 Total: -9.07 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.44 -9.20 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120624387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.339 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds