Wall clock time and date at job start Tue Mar 31 2020 12:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47436 * 180.02562 * 20 19 17 22 22 C 1.34508 * 125.79171 * 89.99427 * 21 20 19 23 23 C 1.41386 * 106.84073 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.84100 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41715 * 359.73323 * 24 23 22 26 26 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 27 27 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 29 29 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 30 30 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 31 31 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 32 32 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 33 33 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 34 34 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 35 35 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 36 36 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 37 37 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 38 38 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 39 39 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 40 40 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 41 41 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 42 42 H 1.08000 * 126.58004 * 0.04107 * 22 21 20 43 43 H 1.08000 * 126.57561 * 179.97438 * 23 22 21 44 44 H 1.07999 * 125.78879 * 180.02562 * 24 23 22 45 45 H 1.08990 * 113.66878 * 265.09053 * 26 12 11 46 46 H 1.09000 * 113.66430 * 36.05678 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6043 -13.3096 2.0809 22 6 5.3844 -13.8915 1.1525 23 6 5.1350 -15.2815 1.2208 24 6 4.2169 -15.4658 2.1865 25 8 3.9032 -14.2684 2.7077 26 6 1.0599 -6.8787 1.0890 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0653 -3.5642 -0.4088 30 1 1.5973 -5.1293 -1.5917 31 1 0.1782 -4.6962 -0.5422 32 1 1.1318 -4.1478 1.9482 33 1 2.9356 -4.3598 1.9065 34 1 2.9951 -7.1043 -0.6938 35 1 3.9799 -6.1903 0.5299 36 1 2.8043 -7.2489 2.4010 37 1 1.9071 -9.3338 0.4669 38 1 2.4897 -11.6516 1.7120 39 1 3.7020 -11.3441 0.4455 40 1 5.4970 -11.3729 2.1554 41 1 4.2853 -11.6805 3.4225 42 1 6.0700 -13.3928 0.4835 43 1 5.5931 -16.0481 0.6135 44 1 3.8056 -16.4159 2.4939 45 1 0.4691 -6.6421 1.9737 46 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120624387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:05 Heat of formation + Delta-G solvation = 1.655775 kcal Electronic energy + Delta-G solvation = -25089.782700 eV Core-core repulsion = 21367.508869 eV Total energy + Delta-G solvation = -3722.273831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -43.45705 -41.65871 -40.31729 -37.27118 -35.25175 -35.03488 -33.75498 -33.47116 -31.44010 -29.73741 -26.74968 -26.57288 -26.34697 -25.61956 -23.40441 -22.63669 -21.53682 -21.47587 -21.08714 -19.41118 -18.71104 -18.44088 -17.69152 -17.31431 -16.93235 -16.79793 -16.59459 -16.05403 -15.83436 -15.44597 -15.20126 -14.97343 -14.68401 -14.16487 -13.80562 -13.70351 -13.62921 -13.50020 -13.27976 -13.14992 -13.02537 -13.00986 -12.98020 -12.85860 -12.37489 -12.32917 -12.09978 -12.05175 -11.84307 -11.27543 -11.05369 -10.98525 -10.84534 -10.80573 -10.65839 -9.96438 -9.35276 -8.97298 -7.95273 -5.23033 0.81271 1.46757 1.47329 1.57463 1.64652 1.72676 2.05117 2.36390 2.56130 3.36438 3.51714 3.56208 3.62939 3.72783 3.86413 3.90513 4.00058 4.07060 4.17538 4.18901 4.29277 4.34512 4.36610 4.51223 4.62526 4.63576 4.77793 4.81817 4.84860 4.95669 4.97396 5.00798 5.02158 5.07538 5.10354 5.11714 5.16001 5.26759 5.29890 5.44848 5.57395 5.64731 5.66694 5.71789 6.24930 6.27830 6.61848 7.30666 7.33434 8.11611 8.34379 9.28273 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047296 B = 0.001671 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.875194 B =16755.560296 C =16926.440672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.140 4.140 14 C -0.118 4.118 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.511 3.489 18 O -0.588 6.588 19 C -0.126 4.126 20 C -0.022 4.022 21 C -0.025 4.025 22 C -0.218 4.218 23 C -0.228 4.228 24 C -0.046 4.046 25 O -0.195 6.195 26 C -0.117 4.117 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.234 0.766 45 H 0.070 0.930 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -34.122 0.173 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.366 5.366 10 C 0.036 3.964 11 C -0.160 4.160 12 C -0.091 4.091 13 C -0.180 4.180 14 C -0.157 4.157 15 C 0.023 3.977 16 N -0.356 5.356 17 C 0.299 3.701 18 O -0.468 6.468 19 C -0.165 4.165 20 C -0.059 4.059 21 C -0.075 4.075 22 C -0.237 4.237 23 C -0.247 4.247 24 C -0.113 4.113 25 O -0.092 6.092 26 C -0.155 4.155 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.250 0.750 45 H 0.088 0.912 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.734 -33.582 0.971 34.265 hybrid contribution -0.138 1.139 -0.195 1.163 sum 6.596 -32.444 0.776 33.117 Atomic orbital electron populations 1.69818 1.06566 1.25944 1.59726 1.25547 0.96391 1.01037 1.03861 0.85099 0.78226 0.79942 0.76663 1.19160 1.21913 1.22147 1.19749 0.91489 0.85568 1.40786 0.90778 1.42602 1.05363 1.01071 1.87559 1.21935 0.95361 0.84089 0.95052 1.23097 0.99723 0.95342 0.97877 1.21901 0.98025 0.92029 0.97184 1.23398 1.00539 0.95644 0.98437 1.23166 0.96849 0.95720 0.99932 1.22297 0.97464 0.79216 0.98719 1.45917 1.39066 1.07992 1.42674 1.21145 0.79174 0.89898 0.79837 1.90719 1.43624 1.76513 1.35958 1.21637 1.01968 0.89548 1.03359 1.19761 1.00916 0.84190 1.01066 1.22522 0.97048 0.91156 0.96766 1.21928 1.04248 0.94828 1.02668 1.22188 1.02592 0.96992 1.02883 1.24763 1.00849 0.88086 0.97573 1.84023 1.55729 1.16199 1.53240 1.23149 0.95445 0.95310 1.01631 0.94041 0.79420 0.91290 0.90644 0.90748 0.91650 0.92886 0.87612 0.92221 0.89239 0.74405 0.86770 0.85982 0.88408 0.90650 0.82376 0.81680 0.75023 0.91161 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.80 9.97 84.03 0.84 -12.96 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -37.29 5.40 -319.92 -1.73 -39.02 16 10 C 0.15 5.75 4.48 45.63 0.20 5.95 16 11 C -0.12 -3.71 7.59 30.89 0.23 -3.48 16 12 C -0.09 -2.33 1.11 -52.31 -0.06 -2.39 16 13 C -0.14 -4.83 7.64 30.88 0.24 -4.59 16 14 C -0.12 -2.59 7.64 30.88 0.24 -2.35 16 15 C 0.13 2.65 4.24 45.63 0.19 2.85 16 16 N -0.71 -10.59 5.35 -439.50 -2.35 -12.95 16 17 C 0.51 9.39 7.83 87.66 0.69 10.07 16 18 O -0.59 -16.58 15.58 -3.03 -0.05 -16.63 16 19 C -0.13 -1.39 5.68 29.85 0.17 -1.22 16 20 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 21 C -0.03 -0.39 6.58 24.83 0.16 -0.23 16 22 C -0.22 -3.02 10.81 22.19 0.24 -2.78 16 23 C -0.23 -2.69 10.91 22.19 0.24 -2.45 16 24 C -0.05 -0.51 12.09 66.97 0.81 0.30 16 25 O -0.19 -3.20 10.65 -2.48 -0.03 -3.23 16 26 C -0.12 -2.32 7.59 30.88 0.23 -2.09 16 27 H 0.25 14.98 8.31 -92.70 -0.77 14.20 16 28 H 0.37 20.41 7.92 -92.71 -0.73 19.68 16 29 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 2.36 7.47 -2.38 -0.02 2.35 16 37 H 0.42 3.35 8.73 -92.71 -0.81 2.54 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.11 1.64 8.12 -2.39 -0.02 1.62 16 Total: -1.00 -74.30 385.71 2.64 -71.66 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.56 Total: 30.53 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 5.05 Total: -19.52 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.80 Total: -111.60 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.30 2.64 -71.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120624387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.315 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds