Wall clock time and date at job start Tue Mar 31 2020 12:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48497 * 109.47281 * 240.00528 * 3 2 1 5 5 H 1.48501 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47070 * 120.00193 * 3 2 1 7 7 C 1.37872 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00487 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47587 * 174.35486 * 9 7 2 11 11 C 1.46898 * 111.00077 * 162.40966 * 10 9 7 12 12 C 1.50701 * 109.47402 * 190.00346 * 11 10 9 13 13 C 1.38053 * 120.39536 * 269.72868 * 12 11 10 14 14 N 1.31910 * 120.99965 * 179.75164 * 13 12 11 15 15 C 1.32426 * 121.83228 * 0.61451 * 14 13 12 16 16 C 1.39157 * 120.24957 * 359.58226 * 15 14 13 17 17 C 1.38778 * 120.39887 * 89.99923 * 12 11 10 18 18 O 1.35957 * 121.07091 * 180.27444 * 16 15 14 19 19 C 1.43220 * 116.65214 * 343.03413 * 18 16 15 20 20 C 1.53466 * 108.20327 * 45.87577 * 19 18 16 21 21 O 1.35989 * 119.24914 * 179.48113 * 15 14 13 22 22 C 1.46901 * 111.00537 * 286.37097 * 10 9 7 23 23 C 1.54898 * 110.47883 * 336.96170 * 22 10 9 24 24 C 1.55238 * 102.58408 * 156.67829 * 23 22 10 25 25 C 1.54266 * 104.23241 * 322.08603 * 24 23 22 26 26 C 1.53876 * 106.59886 * 23.61169 * 25 24 23 27 27 H 0.97002 * 119.99781 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46713 * 54.35269 * 9 7 2 29 29 H 1.09004 * 109.47369 * 294.36213 * 9 7 2 30 30 H 1.08999 * 109.47763 * 310.00225 * 11 10 9 31 31 H 1.08997 * 109.47019 * 70.00880 * 11 10 9 32 32 H 1.08003 * 119.50135 * 0.03091 * 13 12 11 33 33 H 1.08002 * 120.78153 * 359.97438 * 17 12 11 34 34 H 1.09008 * 109.71586 * 165.55229 * 19 18 16 35 35 H 1.09000 * 109.71717 * 286.19312 * 19 18 16 36 36 H 1.09004 * 109.69352 * 59.95794 * 20 19 18 37 37 H 1.08999 * 109.69487 * 180.55171 * 20 19 18 38 38 H 1.08998 * 110.43257 * 214.42748 * 22 10 9 39 39 H 1.08999 * 110.75793 * 275.06490 * 23 22 10 40 40 H 1.09001 * 110.75548 * 38.44080 * 23 22 10 41 41 H 1.08999 * 110.46875 * 203.39417 * 24 23 22 42 42 H 1.09001 * 110.58224 * 80.82747 * 24 23 22 43 43 H 1.09003 * 110.03257 * 264.32858 * 25 24 23 44 44 H 1.09001 * 110.07542 * 142.91733 * 25 24 23 45 45 H 1.09008 * 110.02592 * 240.71725 * 26 25 24 46 46 H 1.08994 * 110.03281 * 119.29098 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.1997 -3.6123 -0.1374 11 6 1.5833 -4.8822 0.2691 12 6 2.6425 -5.9511 0.3515 13 6 2.9414 -6.7248 -0.7520 14 7 3.8696 -7.6603 -0.6946 15 6 4.5443 -7.9075 0.4178 16 6 4.2921 -7.1684 1.5695 17 6 3.3252 -6.1731 1.5392 18 8 4.9786 -7.4043 2.7190 19 6 5.6762 -8.6521 2.8062 20 6 6.4345 -8.8703 1.4899 21 8 5.4828 -8.8916 0.4209 22 6 2.7204 -3.6948 -1.5085 23 6 1.7434 -3.0167 -2.5010 24 6 2.6689 -2.6572 -3.6943 25 6 3.9916 -2.2215 -3.0306 26 6 4.0242 -2.8812 -1.6408 27 1 -0.4850 0.8401 0.0004 28 1 0.5504 -2.5141 -0.8354 29 1 0.7026 -2.6021 0.9358 30 1 1.1122 -4.7618 1.2446 31 1 0.8310 -5.1722 -0.4645 32 1 2.4103 -6.5587 -1.6777 33 1 3.1091 -5.5853 2.4191 34 1 6.3819 -8.6217 3.6365 35 1 4.9630 -9.4622 2.9585 36 1 7.1430 -8.0566 1.3349 37 1 6.9675 -9.8204 1.5263 38 1 2.8891 -4.7344 -1.7895 39 1 0.9627 -3.7117 -2.8102 40 1 1.3104 -2.1174 -2.0631 41 1 2.2439 -1.8369 -4.2727 42 1 2.8300 -3.5278 -4.3302 43 1 4.0189 -1.1365 -2.9296 44 1 4.8389 -2.5623 -3.6257 45 1 4.0674 -2.1163 -0.8654 46 1 4.8869 -3.5428 -1.5618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139734124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:39 Heat of formation + Delta-G solvation = -35.377598 kcal Electronic energy + Delta-G solvation = -27663.682753 eV Core-core repulsion = 23939.803034 eV Total energy + Delta-G solvation = -3723.879719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51997 -40.52548 -39.39085 -38.38019 -36.17999 -34.77636 -33.25417 -32.48111 -30.25149 -29.48474 -28.92399 -28.49417 -26.39893 -25.10016 -24.49487 -23.61899 -21.87787 -21.10396 -20.18049 -19.64560 -18.93159 -18.62294 -18.16314 -16.92939 -16.84961 -16.74379 -16.43509 -16.11674 -15.76924 -15.61791 -15.42302 -15.29929 -14.67556 -14.59616 -14.23013 -14.13130 -14.02436 -13.58399 -13.29263 -13.08404 -12.75504 -12.66699 -12.48012 -12.38607 -12.27588 -12.02936 -12.01956 -11.88350 -11.73160 -11.65418 -11.26700 -10.94152 -10.74022 -10.51205 -10.43634 -10.30940 -9.25385 -8.79423 -8.07871 -6.13034 -0.01783 0.15060 1.44070 1.44473 1.51585 1.70053 2.06760 2.45422 2.60736 3.07104 3.25109 3.42690 3.53923 3.72551 3.82324 3.91596 3.95642 3.97899 3.99936 4.11080 4.18336 4.28718 4.47330 4.53555 4.57564 4.67279 4.73407 4.76514 4.79413 4.82829 4.92254 4.98682 5.08521 5.16728 5.23849 5.25927 5.31318 5.35084 5.37410 5.56814 5.58993 5.64425 5.78984 5.94051 6.15332 6.24925 6.49939 6.76257 6.87108 7.03549 7.54323 9.01327 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.003646 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.718399 B = 7677.991446 C = 8213.075748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.198 3.802 10 N -0.533 5.533 11 C 0.099 3.901 12 C -0.108 4.108 13 C 0.110 3.890 14 N -0.490 5.490 15 C 0.242 3.758 16 C 0.010 3.990 17 C -0.062 4.062 18 O -0.317 6.317 19 C 0.013 3.987 20 C 0.019 3.981 21 O -0.315 6.315 22 C 0.091 3.909 23 C -0.163 4.163 24 C -0.111 4.111 25 C -0.116 4.116 26 C -0.112 4.112 27 H 0.259 0.741 28 H 0.004 0.996 29 H -0.005 1.005 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.178 0.822 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 -17.279 1.408 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.256 5.256 11 C -0.029 4.029 12 C -0.111 4.111 13 C -0.047 4.047 14 N -0.209 5.209 15 C 0.062 3.938 16 C -0.038 4.038 17 C -0.089 4.089 18 O -0.230 6.230 19 C -0.062 4.062 20 C -0.056 4.056 21 O -0.225 6.225 22 C -0.018 4.018 23 C -0.201 4.201 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.150 4.150 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.013 0.987 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.195 0.805 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.183 0.817 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.301 -17.636 1.096 20.975 hybrid contribution -0.688 1.497 0.459 1.710 sum 10.613 -16.139 1.555 19.378 Atomic orbital electron populations 1.70050 1.07230 1.27255 1.52900 1.25619 0.95398 1.01997 0.95776 0.85800 0.78446 0.79785 0.78808 1.19569 1.21445 1.19975 1.21483 0.93617 0.90576 1.47840 0.91608 1.19701 0.90321 0.88233 0.94517 1.62193 1.37640 1.02287 1.23485 1.20915 0.92586 0.87826 1.01596 1.20579 0.99245 0.97747 0.93535 1.22561 0.93481 0.89886 0.98725 1.66819 1.08917 1.19702 1.25484 1.19515 0.93171 0.92041 0.89076 1.19617 0.97522 1.00112 0.86584 1.20935 0.92288 0.95925 0.99705 1.86293 1.63392 1.39766 1.33592 1.24079 0.97430 0.84391 1.00278 1.24134 0.89432 1.07662 0.84381 1.86161 1.40506 1.44879 1.50962 1.22481 0.94421 0.98200 0.86649 1.23329 0.98063 1.02044 0.96705 1.22248 0.95117 1.00754 0.96821 1.22018 0.97897 0.99549 0.95898 1.22215 0.96337 0.99068 0.97429 0.93177 0.97874 0.98678 0.90230 0.93224 0.80511 0.83257 0.82135 0.89601 0.90061 0.81672 0.90158 0.92585 0.90163 0.92595 0.90429 0.93679 0.90764 0.91919 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.50 -26.42 7.41 25.60 0.19 -26.23 16 8 H 0.07 3.51 5.20 -2.91 -0.02 3.49 16 9 C 0.20 9.71 4.27 85.56 0.37 10.07 16 10 N -0.53 -21.38 4.34 -873.80 -3.80 -25.17 16 11 C 0.10 3.30 5.10 85.56 0.44 3.73 16 12 C -0.11 -3.27 5.03 -19.78 -0.10 -3.37 16 13 C 0.11 3.21 9.26 84.64 0.78 3.99 16 14 N -0.49 -15.42 10.38 -308.17 -3.20 -18.61 16 15 C 0.24 7.14 7.55 84.82 0.64 7.78 16 16 C 0.01 0.27 6.50 22.62 0.15 0.42 16 17 C -0.06 -1.85 9.78 22.53 0.22 -1.63 16 18 O -0.32 -7.56 10.43 -80.88 -0.84 -8.41 16 19 C 0.01 0.17 7.27 72.14 0.52 0.69 16 20 C 0.02 0.26 7.25 72.14 0.52 0.79 16 21 O -0.31 -7.92 10.51 -81.24 -0.85 -8.77 16 22 C 0.09 3.31 2.69 45.99 0.12 3.43 16 23 C -0.16 -6.13 5.28 32.01 0.17 -5.96 16 24 C -0.11 -3.56 6.84 31.79 0.22 -3.34 16 25 C -0.12 -3.82 6.80 31.32 0.21 -3.61 16 26 C -0.11 -4.14 6.17 31.32 0.19 -3.95 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.00 0.19 5.38 -2.39 -0.01 0.18 16 29 H 0.00 -0.26 7.78 -2.38 -0.02 -0.28 16 30 H 0.08 2.66 7.80 -2.39 -0.02 2.64 16 31 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.18 4.44 7.17 -2.91 -0.02 4.42 16 33 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 34 H 0.16 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 2.60 4.67 -2.39 -0.01 2.59 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 3.78 4.53 -2.39 -0.01 3.77 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 2.70 5.08 -2.38 -0.01 2.69 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -66.69 355.91 -0.28 -66.96 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.99 Total: 18.24 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.11 Total: -16.19 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -6.71 Total: -97.62 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.70 Total: -17.18 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.69 -0.28 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139734124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.587 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds