Wall clock time and date at job start Tue Mar 31 2020 13:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 120.00260 * 2 1 4 4 C 1.38217 * 120.00052 * 179.72361 * 3 2 1 5 5 C 1.38252 * 119.99814 * 0.25726 * 4 3 2 6 6 C 1.38211 * 120.00330 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99972 * 180.25400 * 2 1 3 8 8 C 1.50702 * 119.99916 * 0.02564 * 7 2 1 9 9 H 1.09001 * 109.47231 * 33.91378 * 8 7 2 10 10 O 1.42896 * 109.47178 * 153.91586 * 8 7 2 11 11 C 1.50703 * 109.46957 * 273.91600 * 8 7 2 12 12 O 1.21284 * 119.99807 * 295.72600 * 11 8 7 13 13 N 1.34776 * 120.00197 * 115.72245 * 11 8 7 14 14 C 1.47080 * 120.88051 * 5.61416 * 13 11 8 15 15 C 1.53691 * 108.27457 * 128.75577 * 14 13 11 16 16 N 1.46893 * 109.26149 * 54.08364 * 15 14 13 17 17 C 1.46894 * 111.00465 * 172.60649 * 16 15 14 18 18 C 1.50704 * 109.46970 * 294.30202 * 17 16 15 19 19 H 1.07996 * 120.00303 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99975 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46601 * 60.00171 * 22 20 18 24 24 H 1.48501 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46984 * 300.00297 * 22 20 18 26 26 C 1.46903 * 111.26622 * 296.75914 * 16 15 14 27 27 C 1.47073 * 120.87986 * 185.89522 * 13 11 8 28 28 H 1.09000 * 109.47107 * 95.77845 * 1 2 3 29 29 H 1.09000 * 109.47046 * 215.78397 * 1 2 3 30 30 H 1.08997 * 109.47219 * 335.77717 * 1 2 3 31 31 H 1.08000 * 120.00150 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99485 * 180.27747 * 4 3 2 33 33 H 1.08002 * 119.99524 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.00262 * 180.02562 * 6 5 4 35 35 H 0.96699 * 114.00267 * 59.99675 * 10 8 7 36 36 H 1.09001 * 109.63106 * 248.52744 * 14 13 11 37 37 H 1.09008 * 109.62689 * 9.10418 * 14 13 11 38 38 H 1.09005 * 109.64953 * 294.07541 * 15 14 13 39 39 H 1.09003 * 109.42007 * 173.95128 * 15 14 13 40 40 H 1.09001 * 109.47128 * 54.30283 * 17 16 15 41 41 H 1.09003 * 109.47323 * 174.30284 * 17 16 15 42 42 H 0.97003 * 119.99957 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.48970 * 303.13622 * 26 16 15 44 44 H 1.09004 * 109.51194 * 183.07429 * 26 16 15 45 45 H 1.08998 * 109.63410 * 350.89066 * 27 13 11 46 46 H 1.09003 * 109.63180 * 111.48273 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2716 -0.0001 0.0062 6 6 3.5806 -1.1971 0.0013 7 6 2.1981 -1.1970 -0.0053 8 6 1.4445 -2.5021 -0.0117 9 1 0.5245 -2.3876 -0.5849 10 8 2.2545 -3.5169 -0.6085 11 6 1.1088 -2.8952 1.4039 12 8 1.9971 -3.1489 2.1897 13 7 -0.1786 -2.9646 1.7967 14 6 -1.2732 -2.7813 0.8317 15 6 -2.2454 -3.9629 0.9754 16 7 -2.6671 -4.0756 2.3780 17 6 -3.7290 -5.0793 2.5295 18 6 -4.9685 -4.6115 1.8113 19 1 -4.9677 -3.6633 1.2943 20 6 -6.1037 -5.3941 1.8141 21 7 -6.1049 -6.5486 2.4440 22 14 -7.6404 -4.8140 0.9244 23 1 -7.3368 -4.6274 -0.5172 24 1 -8.7138 -5.8287 1.0775 25 1 -8.0921 -3.5246 1.5062 26 6 -1.5276 -4.3783 3.2543 27 6 -0.5260 -3.2197 3.2029 28 1 -0.3633 -0.1035 -1.0224 29 1 -0.3633 -0.8337 0.6009 30 1 -0.3633 0.9372 0.4216 31 1 1.6584 2.1326 -0.0004 32 1 4.1204 2.1325 0.0103 33 1 5.3517 -0.0001 0.0111 34 1 4.1206 -2.1324 0.0021 35 1 3.0913 -3.6727 -0.1496 36 1 -1.7940 -1.8470 1.0418 37 1 -0.8691 -2.7589 -0.1805 38 1 -1.7501 -4.8844 0.6693 39 1 -3.1186 -3.7925 0.3456 40 1 -3.3975 -6.0261 2.1032 41 1 -3.9519 -5.2155 3.5878 42 1 -6.9036 -7.0990 2.4463 43 1 -1.0423 -5.2940 2.9166 44 1 -1.8799 -4.5095 4.2775 45 1 0.3722 -3.4874 3.7593 46 1 -0.9764 -2.3269 3.6366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144528009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:41 Heat of formation + Delta-G solvation = -61.645381 kcal Electronic energy + Delta-G solvation = -27368.698126 eV Core-core repulsion = 23643.679351 eV Total energy + Delta-G solvation = -3725.018775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96776 -40.24855 -39.07882 -37.50413 -36.14711 -34.55053 -33.93294 -32.44903 -32.08537 -30.17877 -28.66708 -27.68273 -26.90392 -24.72482 -24.03161 -23.07706 -22.45904 -21.69338 -20.37332 -19.14209 -18.48757 -18.26952 -17.59647 -16.77336 -16.63953 -16.46138 -16.16952 -16.04827 -15.59534 -15.50337 -15.32235 -15.09344 -14.83531 -14.53487 -14.29072 -14.13369 -13.95920 -13.51690 -13.37050 -13.29205 -13.02804 -12.88641 -12.79709 -12.59565 -12.55034 -12.39240 -12.28993 -12.17235 -11.96815 -11.79707 -11.58427 -11.30512 -10.82663 -10.60078 -9.87885 -9.75808 -9.53395 -9.10043 -8.19216 -6.29847 0.26585 0.44615 1.31649 1.44982 1.47958 1.55511 1.79232 2.42116 2.74307 3.10544 3.16380 3.22501 3.34329 3.53594 3.69661 3.89004 3.97068 3.99358 3.99540 4.16564 4.20053 4.29846 4.37145 4.43943 4.49053 4.63280 4.66600 4.77215 4.79201 4.80699 4.88698 4.91500 4.96937 5.07233 5.16470 5.19911 5.28404 5.34949 5.49259 5.56696 5.60442 5.64293 6.01684 6.05330 6.14637 6.28969 6.33802 6.53236 6.85869 6.87410 7.40348 8.92056 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.003037 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.147158 B = 9217.337253 C = 9793.892738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.114 4.114 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.135 4.135 8 C 0.137 3.863 9 H 0.141 0.859 10 O -0.543 6.543 11 C 0.494 3.506 12 O -0.572 6.572 13 N -0.601 5.601 14 C 0.110 3.890 15 C 0.048 3.952 16 N -0.534 5.534 17 C 0.208 3.792 18 C -0.522 4.522 19 H 0.073 0.927 20 C 0.000 4.000 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.266 1.266 26 C 0.043 3.957 27 C 0.125 3.875 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.390 0.610 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.012 0.988 39 H 0.092 0.908 40 H -0.043 1.043 41 H 0.005 0.995 42 H 0.264 0.736 43 H 0.012 0.988 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.644 16.353 -7.050 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.151 4.151 6 C -0.127 4.127 7 C -0.136 4.136 8 C 0.075 3.925 9 H 0.158 0.842 10 O -0.350 6.350 11 C 0.283 3.717 12 O -0.451 6.451 13 N -0.335 5.335 14 C -0.011 4.011 15 C -0.081 4.081 16 N -0.259 5.259 17 C 0.082 3.918 18 C -0.560 4.560 19 H 0.091 0.909 20 C -0.198 4.198 21 N -0.578 5.578 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.086 4.086 27 C 0.003 3.997 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.030 0.970 39 H 0.110 0.890 40 H -0.025 1.025 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.326 16.478 -6.869 24.878 hybrid contribution -0.160 -1.439 0.236 1.467 sum 17.166 15.040 -6.633 23.767 Atomic orbital electron populations 1.21261 0.90017 1.04356 1.03860 1.20004 0.97173 0.92413 0.98451 1.21360 0.94809 0.97795 1.00709 1.21560 0.94472 0.99017 0.98111 1.21392 1.01135 0.92025 1.00571 1.21072 0.93266 0.99511 0.98853 1.19984 0.94824 0.93712 1.05054 1.20919 0.95859 0.85876 0.89836 0.84163 1.86630 1.35818 1.57242 1.55359 1.21729 0.82221 0.76564 0.91233 1.90652 1.47272 1.51336 1.55881 1.48356 1.05632 1.69271 1.10194 1.22415 0.86620 0.99163 0.92926 1.22475 0.98563 0.96383 0.90636 1.62026 1.08657 1.48823 1.06398 1.19377 0.89402 0.87564 0.95439 1.21439 0.96500 1.05191 1.32843 0.90881 1.25957 1.02532 0.94850 0.96461 1.70095 1.30250 1.13035 1.44442 0.85409 0.77839 0.77961 0.79263 1.18811 1.21490 1.19096 1.22434 0.91645 0.95938 0.98611 1.21676 0.97774 0.98364 0.81919 0.88935 0.91464 0.89715 0.83701 0.83411 0.83836 0.85415 0.75895 0.87911 0.87063 0.96952 0.88953 1.02504 0.97686 0.92776 0.96984 0.89845 0.89331 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.04 71.24 0.64 -1.52 16 2 C -0.08 -1.54 5.88 -19.87 -0.12 -1.66 16 3 C -0.13 -2.10 9.68 22.27 0.22 -1.88 16 4 C -0.11 -1.72 10.05 22.27 0.22 -1.49 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.11 -2.21 9.31 22.27 0.21 -2.00 16 7 C -0.13 -2.96 5.00 -19.86 -0.10 -3.05 16 8 C 0.14 3.22 2.79 29.10 0.08 3.30 16 9 H 0.14 2.86 4.22 -2.39 -0.01 2.85 16 10 O -0.54 -13.08 13.00 -140.57 -1.83 -14.91 16 11 C 0.49 14.27 6.34 87.66 0.56 14.82 16 12 O -0.57 -19.78 16.31 5.37 0.09 -19.70 16 13 N -0.60 -16.97 2.77 -817.05 -2.26 -19.24 16 14 C 0.11 2.80 4.64 86.50 0.40 3.20 16 15 C 0.05 1.70 5.47 86.54 0.47 2.17 16 16 N -0.53 -21.86 4.62 -898.89 -4.15 -26.01 16 17 C 0.21 10.81 4.72 85.56 0.40 11.22 16 18 C -0.52 -28.14 8.41 25.60 0.22 -27.92 16 19 H 0.07 3.73 7.13 -2.91 -0.02 3.71 16 20 C 0.00 0.00 5.46 84.66 0.46 0.46 16 21 N -0.94 -55.76 13.29 21.45 0.28 -55.48 16 22 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C 0.04 1.54 5.62 86.38 0.49 2.03 16 27 C 0.13 3.74 6.61 86.35 0.57 4.31 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.19 2.88 -2.39 -0.01 1.18 16 30 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.13 2.28 6.43 -2.91 -0.02 2.26 16 35 H 0.39 7.82 7.16 -74.06 -0.53 7.29 16 36 H 0.10 2.30 7.13 -2.39 -0.02 2.28 16 37 H 0.11 2.22 5.19 -2.38 -0.01 2.20 16 38 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.09 3.38 6.67 -2.39 -0.02 3.37 16 40 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 41 H 0.01 0.28 7.97 -2.39 -0.02 0.26 16 42 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 2.94 7.99 -2.39 -0.02 2.92 16 45 H 0.09 2.68 7.04 -2.39 -0.02 2.67 16 46 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -70.21 360.95 -0.42 -70.63 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.48 Total: 20.12 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 4.95 Total: -0.02 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.13 Total: -100.72 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.74 Total: -34.60 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.21 -0.42 -70.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144528009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.981 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds