Wall clock time and date at job start Tue Mar 31 2020 12:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48510 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47588 * 300.00409 * 3 2 1 6 6 H 1.48502 * 109.47132 * 60.01033 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 164.46954 * 7 2 1 9 9 N 1.36940 * 119.99874 * 344.47015 * 7 2 1 10 10 C 1.47102 * 121.51360 * 336.18990 * 9 7 2 11 11 C 1.50323 * 109.11127 * 223.15765 * 10 9 7 12 12 C 1.29454 * 123.64590 * 348.54347 * 11 10 9 13 13 C 1.50712 * 117.69203 * 181.13493 * 12 11 10 14 14 C 1.52997 * 109.46805 * 95.00070 * 13 12 11 15 15 N 1.46498 * 109.47047 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00238 * 180.02562 * 15 14 13 17 17 O 1.21277 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00278 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47489 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47434 * 179.97438 * 19 18 16 21 21 C 1.34515 * 125.79031 * 89.99913 * 20 19 18 22 22 C 1.41379 * 106.84347 * 180.02562 * 21 20 19 23 23 C 1.34518 * 106.83870 * 359.97438 * 22 21 20 24 24 O 1.34303 * 108.42223 * 359.73634 * 23 22 21 25 25 C 1.49973 * 124.61570 * 1.15603 * 12 11 10 26 26 C 1.47346 * 121.37425 * 155.99561 * 9 7 2 27 27 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.71963 * 103.17316 * 10 9 7 29 29 H 1.08999 * 109.38663 * 342.94970 * 10 9 7 30 30 H 1.07997 * 118.17984 * 168.81447 * 11 10 9 31 31 H 1.08996 * 109.46609 * 214.99616 * 13 12 11 32 32 H 1.08994 * 109.47059 * 334.99790 * 13 12 11 33 33 H 1.09003 * 109.47055 * 300.00087 * 14 13 12 34 34 H 1.08994 * 109.47540 * 60.00015 * 14 13 12 35 35 H 0.97000 * 119.99647 * 359.97438 * 15 14 13 36 36 H 1.08997 * 109.46731 * 299.99603 * 18 16 15 37 37 H 1.08999 * 109.47172 * 59.98520 * 18 16 15 38 38 H 1.09003 * 109.47107 * 300.00114 * 19 18 16 39 39 H 1.09007 * 109.47118 * 59.99495 * 19 18 16 40 40 H 1.08006 * 126.57698 * 359.96784 * 21 20 19 41 41 H 1.08000 * 126.57954 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.79088 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.31396 * 101.26707 * 25 12 11 44 44 H 1.08999 * 109.31466 * 220.69797 * 25 12 11 45 45 H 1.08999 * 109.77792 * 358.61675 * 26 9 7 46 46 H 1.08997 * 109.77697 * 237.81310 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2510 9 7 1.3630 -2.3666 0.3165 10 6 0.1415 -2.3687 1.1361 11 6 0.2255 -3.4830 2.1416 12 6 1.1209 -4.4172 2.1038 13 6 1.0646 -5.4846 3.1663 14 6 0.2871 -6.6911 2.6365 15 7 0.2318 -7.7284 3.6694 16 6 -0.4067 -8.8898 3.4247 17 8 -0.9360 -9.0759 2.3496 18 6 -0.4630 -9.9572 4.4871 19 6 -1.2407 -11.1636 3.9574 20 6 -1.2964 -12.2311 5.0196 21 6 -2.2526 -12.3590 5.9570 22 6 -1.9118 -13.4866 6.7387 23 6 -0.7679 -13.9807 6.2319 24 8 -0.4031 -13.2199 5.1870 25 6 2.2104 -4.5120 1.0777 26 6 1.8588 -3.6722 -0.1532 27 1 -0.4850 0.8401 0.0004 28 1 -0.7294 -2.5189 0.4980 29 1 0.0530 -1.4148 1.6561 30 1 -0.5043 -3.5080 2.9373 31 1 2.0775 -5.7912 3.4272 32 1 0.5650 -5.0904 4.0512 33 1 -0.7259 -6.3844 2.3755 34 1 0.7866 -7.0852 1.7516 35 1 0.6555 -7.5796 4.5292 36 1 0.5498 -10.2636 4.7483 37 1 -0.9628 -9.5630 5.3720 38 1 -2.2536 -10.8569 3.6965 39 1 -0.7411 -11.5578 3.0724 40 1 -3.1148 -11.7218 6.0879 41 1 -2.4639 -13.8764 7.5811 42 1 -0.2354 -14.8451 6.6002 43 1 3.1435 -4.1481 1.5079 44 1 2.3357 -5.5531 0.7800 45 1 2.7472 -3.5297 -0.7685 46 1 1.0843 -4.1739 -0.7331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159237205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:16 Heat of formation + Delta-G solvation = 2.647293 kcal Electronic energy + Delta-G solvation = -25087.007651 eV Core-core repulsion = 21364.776815 eV Total energy + Delta-G solvation = -3722.230836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.90028 -39.89275 -37.91945 -35.54232 -34.36911 -33.56782 -33.12264 -31.41893 -29.94794 -29.47497 -28.39671 -25.68427 -24.48415 -22.94641 -22.39579 -22.09343 -21.01174 -20.76699 -20.33804 -17.90644 -17.60147 -17.05409 -16.44250 -16.13667 -16.06337 -15.53654 -15.13224 -14.85587 -14.57322 -14.11736 -13.84146 -13.64589 -13.43014 -13.28376 -13.17010 -13.00933 -12.68694 -12.62831 -12.39357 -12.18119 -11.99487 -11.58402 -11.46107 -11.40126 -11.00192 -10.91034 -10.73558 -10.31477 -10.27552 -10.26439 -10.02257 -9.80031 -9.53410 -9.16566 -8.80732 -8.65014 -7.91705 -6.71779 -5.77743 -3.16291 1.36458 2.25770 2.47345 2.60403 2.84786 3.18971 3.38121 3.45599 3.47819 4.25624 4.49899 4.50596 4.59635 4.69472 4.73006 4.85971 5.10423 5.11701 5.21350 5.28938 5.32101 5.40871 5.47120 5.56306 5.57640 5.63494 5.65246 5.79484 5.81007 6.01009 6.05240 6.15243 6.15951 6.22067 6.33587 6.41028 6.56667 6.79603 6.80229 6.91812 7.24113 7.30744 7.35502 7.42245 7.76444 7.89264 8.05809 8.40140 9.21621 9.84529 10.43482 11.32697 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.001694 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.104675 B =16525.156275 C =16641.897818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.195 3.805 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.091 4.091 14 C 0.123 3.877 15 N -0.730 5.730 16 C 0.511 3.489 17 O -0.540 6.540 18 C -0.137 4.137 19 C -0.025 4.025 20 C -0.009 4.009 21 C -0.211 4.211 22 C -0.214 4.214 23 C -0.045 4.045 24 O -0.176 6.176 25 C -0.091 4.091 26 C 0.142 3.858 27 H 0.253 0.747 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -24.551 14.977 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.000 4.000 15 N -0.381 5.381 16 C 0.297 3.703 17 O -0.417 6.417 18 C -0.178 4.178 19 C -0.063 4.063 20 C -0.059 4.059 21 C -0.230 4.230 22 C -0.233 4.233 23 C -0.113 4.113 24 O -0.072 6.072 25 C -0.130 4.130 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.589 -24.546 13.984 28.294 hybrid contribution 0.371 0.872 0.855 1.276 sum -1.219 -23.674 14.839 27.967 Atomic orbital electron populations 1.70028 1.05169 1.25326 1.54970 1.24989 0.95392 0.98269 1.01384 0.86186 0.79227 0.83927 0.77232 1.20330 1.21768 1.21639 1.19235 0.92244 0.84369 1.41490 0.91327 1.44171 1.29072 1.01139 1.57476 1.19728 0.88575 0.94864 0.89773 1.23118 0.96645 0.97374 0.99403 1.20233 0.99384 0.96571 0.98218 1.20906 0.99969 0.94167 0.97873 1.21454 1.01244 0.86737 0.90538 1.46126 1.56733 1.16709 1.18571 1.20538 0.78182 0.82864 0.88758 1.90739 1.45536 1.79635 1.25746 1.21666 1.03243 0.94313 0.98531 1.19849 1.03258 0.89005 0.94154 1.22481 0.90691 0.92195 1.00497 1.21649 1.02014 1.01128 0.98187 1.21857 0.98761 0.99024 1.03646 1.24045 0.98612 0.98623 0.89989 1.84035 1.45963 1.34087 1.43133 1.20756 0.96601 0.98980 0.96656 1.20959 0.97352 0.87261 0.92866 0.93697 0.94406 0.89115 0.89090 0.91488 0.91553 0.91250 0.91239 0.76655 0.88486 0.88367 0.87883 0.89122 0.83398 0.83490 0.78164 0.91957 0.92899 0.92550 0.95855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.45 11.07 55.49 0.61 -25.83 16 2 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 3 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.75 9.71 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.88 -52.48 -0.41 1.44 16 9 N -0.60 -15.12 3.01 -173.59 -0.52 -15.64 16 10 C 0.20 4.72 5.25 -5.05 -0.03 4.69 16 11 C -0.15 -2.81 9.47 -35.78 -0.34 -3.15 16 12 C -0.14 -2.45 5.11 -100.98 -0.52 -2.96 16 13 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 14 C 0.12 1.54 5.66 -4.04 -0.02 1.52 16 15 N -0.73 -7.12 5.56 -60.30 -0.33 -7.46 16 16 C 0.51 5.51 7.83 -10.98 -0.09 5.43 16 17 O -0.54 -8.15 15.98 5.56 0.09 -8.07 16 18 C -0.14 -0.99 5.68 -27.89 -0.16 -1.15 16 19 C -0.03 -0.21 5.04 -27.89 -0.14 -0.35 16 20 C -0.01 -0.07 6.57 -35.63 -0.23 -0.31 16 21 C -0.21 -1.69 10.81 -39.70 -0.43 -2.12 16 22 C -0.21 -1.53 10.91 -39.70 -0.43 -1.96 16 23 C -0.05 -0.31 12.09 29.42 0.36 0.05 16 24 O -0.18 -1.61 10.65 5.70 0.06 -1.55 16 25 C -0.09 -1.60 5.95 -28.18 -0.17 -1.77 16 26 C 0.14 3.02 6.57 -3.53 -0.02 2.99 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.09 2.42 6.40 -51.93 -0.33 2.09 16 30 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 31 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.40 2.68 8.47 -40.82 -0.35 2.34 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -33.31 382.19 -9.32 -42.63 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.36 Total: 0.82 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.60 Total: -7.43 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.24 Total: -48.93 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.15 Total: -9.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.31 -9.32 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159237205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds