Wall clock time and date at job start Tue Mar 31 2020 12:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48510 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47588 * 300.00409 * 3 2 1 6 6 H 1.48502 * 109.47132 * 60.01033 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 164.46954 * 7 2 1 9 9 N 1.36940 * 119.99874 * 344.47015 * 7 2 1 10 10 C 1.47102 * 121.51360 * 336.18990 * 9 7 2 11 11 C 1.50323 * 109.11127 * 223.15765 * 10 9 7 12 12 C 1.29454 * 123.64590 * 348.54347 * 11 10 9 13 13 C 1.50712 * 117.69203 * 181.13493 * 12 11 10 14 14 C 1.52997 * 109.46805 * 95.00070 * 13 12 11 15 15 N 1.46498 * 109.47047 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00238 * 180.02562 * 15 14 13 17 17 O 1.21277 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00278 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47489 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47434 * 179.97438 * 19 18 16 21 21 C 1.34515 * 125.79031 * 89.99913 * 20 19 18 22 22 C 1.41379 * 106.84347 * 180.02562 * 21 20 19 23 23 C 1.34518 * 106.83870 * 359.97438 * 22 21 20 24 24 O 1.34303 * 108.42223 * 359.73634 * 23 22 21 25 25 C 1.49973 * 124.61570 * 1.15603 * 12 11 10 26 26 C 1.47346 * 121.37425 * 155.99561 * 9 7 2 27 27 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.71963 * 103.17316 * 10 9 7 29 29 H 1.08999 * 109.38663 * 342.94970 * 10 9 7 30 30 H 1.07997 * 118.17984 * 168.81447 * 11 10 9 31 31 H 1.08996 * 109.46609 * 214.99616 * 13 12 11 32 32 H 1.08994 * 109.47059 * 334.99790 * 13 12 11 33 33 H 1.09003 * 109.47055 * 300.00087 * 14 13 12 34 34 H 1.08994 * 109.47540 * 60.00015 * 14 13 12 35 35 H 0.97000 * 119.99647 * 359.97438 * 15 14 13 36 36 H 1.08997 * 109.46731 * 299.99603 * 18 16 15 37 37 H 1.08999 * 109.47172 * 59.98520 * 18 16 15 38 38 H 1.09003 * 109.47107 * 300.00114 * 19 18 16 39 39 H 1.09007 * 109.47118 * 59.99495 * 19 18 16 40 40 H 1.08006 * 126.57698 * 359.96784 * 21 20 19 41 41 H 1.08000 * 126.57954 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.79088 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.31396 * 101.26707 * 25 12 11 44 44 H 1.08999 * 109.31466 * 220.69797 * 25 12 11 45 45 H 1.08999 * 109.77792 * 358.61675 * 26 9 7 46 46 H 1.08997 * 109.77697 * 237.81310 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2510 9 7 1.3630 -2.3666 0.3165 10 6 0.1415 -2.3687 1.1361 11 6 0.2255 -3.4830 2.1416 12 6 1.1209 -4.4172 2.1038 13 6 1.0646 -5.4846 3.1663 14 6 0.2871 -6.6911 2.6365 15 7 0.2318 -7.7284 3.6694 16 6 -0.4067 -8.8898 3.4247 17 8 -0.9360 -9.0759 2.3496 18 6 -0.4630 -9.9572 4.4871 19 6 -1.2407 -11.1636 3.9574 20 6 -1.2964 -12.2311 5.0196 21 6 -2.2526 -12.3590 5.9570 22 6 -1.9118 -13.4866 6.7387 23 6 -0.7679 -13.9807 6.2319 24 8 -0.4031 -13.2199 5.1870 25 6 2.2104 -4.5120 1.0777 26 6 1.8588 -3.6722 -0.1532 27 1 -0.4850 0.8401 0.0004 28 1 -0.7294 -2.5189 0.4980 29 1 0.0530 -1.4148 1.6561 30 1 -0.5043 -3.5080 2.9373 31 1 2.0775 -5.7912 3.4272 32 1 0.5650 -5.0904 4.0512 33 1 -0.7259 -6.3844 2.3755 34 1 0.7866 -7.0852 1.7516 35 1 0.6555 -7.5796 4.5292 36 1 0.5498 -10.2636 4.7483 37 1 -0.9628 -9.5630 5.3720 38 1 -2.2536 -10.8569 3.6965 39 1 -0.7411 -11.5578 3.0724 40 1 -3.1148 -11.7218 6.0879 41 1 -2.4639 -13.8764 7.5811 42 1 -0.2354 -14.8451 6.6002 43 1 3.1435 -4.1481 1.5079 44 1 2.3357 -5.5531 0.7800 45 1 2.7472 -3.5297 -0.7685 46 1 1.0843 -4.1739 -0.7331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159237205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:15 Heat of formation + Delta-G solvation = -17.706264 kcal Electronic energy + Delta-G solvation = -25087.890247 eV Core-core repulsion = 21364.776815 eV Total energy + Delta-G solvation = -3723.113432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.45695 -40.79309 -39.46422 -36.78529 -35.09881 -35.04326 -33.69160 -33.14374 -31.51134 -30.60893 -29.44315 -27.19842 -25.52892 -24.51627 -23.76676 -22.63727 -22.45853 -21.53695 -21.09000 -19.46256 -18.54047 -17.77452 -17.57929 -17.11850 -16.96951 -16.84285 -16.63320 -15.78333 -15.74392 -15.45798 -15.20168 -15.17597 -14.66111 -14.40556 -14.13667 -13.85940 -13.70423 -13.50302 -13.36661 -13.26182 -13.19978 -13.01199 -12.82374 -12.79919 -12.60327 -12.33909 -12.12769 -12.05832 -11.88511 -11.66725 -11.25878 -10.94571 -10.80687 -10.69678 -10.08763 -9.48482 -9.35240 -8.75822 -7.88454 -5.30545 0.81037 1.42445 1.46413 1.47193 1.58334 1.64442 1.72797 2.05485 2.36779 2.50782 3.28399 3.62128 3.68091 3.89856 3.97220 4.03700 4.07670 4.14673 4.18760 4.24431 4.30604 4.36452 4.55043 4.59117 4.61197 4.70528 4.77169 4.86823 4.91954 4.97086 4.99023 5.00691 5.10112 5.11497 5.18384 5.23948 5.27776 5.41606 5.45982 5.50353 5.60751 5.64833 5.88615 6.24838 6.29035 6.33357 6.57758 7.12688 7.27698 7.82652 8.37934 9.20355 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.001694 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.104675 B =16525.156275 C =16641.897818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.174 4.174 12 C -0.121 4.121 13 C -0.078 4.078 14 C 0.131 3.869 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.588 6.588 18 C -0.124 4.124 19 C -0.022 4.022 20 C -0.025 4.025 21 C -0.218 4.218 22 C -0.228 4.228 23 C -0.045 4.045 24 O -0.194 6.194 25 C -0.087 4.087 26 C 0.134 3.866 27 H 0.249 0.751 28 H 0.002 0.998 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.234 0.766 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -26.399 17.456 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.194 4.194 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.007 3.993 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.469 6.469 18 C -0.164 4.164 19 C -0.060 4.060 20 C -0.075 4.075 21 C -0.237 4.237 22 C -0.247 4.247 23 C -0.112 4.112 24 O -0.091 6.091 25 C -0.125 4.125 26 C 0.009 3.991 27 H 0.058 0.942 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.099 -26.418 16.502 31.148 hybrid contribution -0.128 1.329 0.042 1.336 sum -0.029 -25.089 16.544 30.052 Atomic orbital electron populations 1.70205 1.06677 1.25717 1.56304 1.25798 0.96185 1.01520 1.01670 0.85138 0.78559 0.79616 0.76735 1.18938 1.21999 1.21659 1.19590 0.92607 0.85580 1.40907 0.91043 1.44460 1.29248 1.02058 1.58116 1.19381 0.87199 0.95382 0.90022 1.22816 0.99461 0.97181 0.99904 1.20605 0.97140 0.96291 0.98187 1.20800 1.01781 0.92392 0.96590 1.21152 0.99848 0.87306 0.90978 1.45934 1.56400 1.15751 1.18798 1.21154 0.77042 0.83393 0.88726 1.90726 1.47610 1.80569 1.27983 1.21626 1.04466 0.92558 0.97711 1.19757 1.02967 0.89501 0.93743 1.22501 0.91283 0.92670 1.01035 1.21930 1.02073 1.01580 0.98100 1.22185 0.99228 0.98929 1.04314 1.24770 0.98698 0.98825 0.88926 1.84024 1.46477 1.34549 1.44090 1.20712 0.96874 0.99961 0.94996 1.21161 0.97050 0.86116 0.94803 0.94155 0.98034 0.92645 0.86867 0.88868 0.89749 0.93366 0.92465 0.74419 0.86611 0.85995 0.88452 0.90585 0.82411 0.81658 0.74975 0.91274 0.89639 0.92266 0.96545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 11.07 21.65 0.24 -56.79 16 2 C -0.06 -3.26 5.01 84.86 0.43 -2.84 16 3 Si 0.97 45.55 29.58 68.60 2.03 47.58 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 7 C -0.26 -14.46 9.71 84.03 0.82 -13.64 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 9 N -0.61 -31.97 3.01 -703.12 -2.12 -34.09 16 10 C 0.21 10.37 5.25 85.40 0.45 10.81 16 11 C -0.17 -6.69 9.47 27.11 0.26 -6.43 16 12 C -0.12 -3.90 5.11 -15.13 -0.08 -3.98 16 13 C -0.08 -1.68 5.32 29.85 0.16 -1.52 16 14 C 0.13 2.98 5.66 86.38 0.49 3.47 16 15 N -0.72 -11.90 5.56 -463.07 -2.57 -14.47 16 16 C 0.51 10.11 7.83 87.66 0.69 10.79 16 17 O -0.59 -17.64 15.98 -3.02 -0.05 -17.69 16 18 C -0.12 -1.50 5.68 29.85 0.17 -1.33 16 19 C -0.02 -0.34 5.04 29.84 0.15 -0.19 16 20 C -0.03 -0.40 6.57 24.83 0.16 -0.24 16 21 C -0.22 -3.15 10.81 22.19 0.24 -2.91 16 22 C -0.23 -2.79 10.91 22.19 0.24 -2.54 16 23 C -0.05 -0.52 12.09 66.97 0.81 0.28 16 24 O -0.19 -3.28 10.65 -2.52 -0.03 -3.31 16 25 C -0.09 -2.87 5.95 29.65 0.18 -2.69 16 26 C 0.13 5.68 6.57 86.25 0.57 6.25 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.06 3.13 6.40 -2.39 -0.02 3.12 16 30 H 0.11 3.77 7.73 -2.91 -0.02 3.75 16 31 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 32 H 0.08 1.60 7.78 -2.39 -0.02 1.58 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.42 3.87 8.47 -92.71 -0.79 3.09 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.23 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 45 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -75.83 382.19 3.41 -72.43 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.18 Total: 13.05 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.72 Total: -6.71 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.45 Total: -105.34 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.08 Total: -20.99 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.83 3.41 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159237205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.720 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds