Wall clock time and date at job start Tue Mar 31 2020 12:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 120.00836 * 2 1 4 4 C 1.37968 * 119.95942 * 180.11274 * 3 2 1 5 5 C 1.39147 * 120.21179 * 0.02562 * 4 3 2 6 6 C 1.38364 * 119.69887 * 359.81719 * 5 4 3 7 7 C 1.38104 * 120.00834 * 180.02562 * 2 1 3 8 8 C 1.50768 * 121.41012 * 180.50172 * 6 5 4 9 9 C 1.53151 * 109.69725 * 342.14958 * 8 6 5 10 10 C 1.53401 * 108.26320 * 48.17899 * 9 8 6 11 11 H 1.09002 * 109.68248 * 55.05949 * 10 9 8 12 12 C 1.50701 * 109.68407 * 175.57878 * 10 9 8 13 13 O 1.21270 * 120.00350 * 114.48023 * 12 10 9 14 14 N 1.34783 * 119.99509 * 294.48001 * 12 10 9 15 15 C 1.46496 * 119.99494 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47063 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.47248 * 180.02562 * 17 16 15 19 19 C 1.36930 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00428 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99694 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47282 * 89.99513 * 23 21 19 25 25 H 1.48494 * 109.47146 * 209.99757 * 23 21 19 26 26 H 1.48497 * 109.47194 * 329.99690 * 23 21 19 27 27 O 1.35850 * 118.49685 * 179.78019 * 5 4 3 28 28 H 1.08998 * 109.47089 * 89.99385 * 1 2 3 29 29 H 1.09004 * 109.46912 * 209.99747 * 1 2 3 30 30 H 1.09003 * 109.46619 * 329.99534 * 1 2 3 31 31 H 1.07997 * 120.02071 * 0.13770 * 3 2 1 32 32 H 1.08003 * 119.89214 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.83990 * 0.02562 * 7 2 1 34 34 H 1.09001 * 109.43274 * 102.19836 * 8 6 5 35 35 H 1.08992 * 109.44341 * 222.07448 * 8 6 5 36 36 H 1.09008 * 109.68456 * 288.50314 * 9 8 6 37 37 H 1.09003 * 109.75045 * 167.89115 * 9 8 6 38 38 H 0.96991 * 119.99896 * 0.02562 * 14 12 10 39 39 H 1.08996 * 109.47421 * 299.99651 * 15 14 12 40 40 H 1.08999 * 109.47387 * 60.00085 * 15 14 12 41 41 H 1.08997 * 109.47204 * 299.99583 * 16 15 14 42 42 H 1.08994 * 109.47345 * 60.00263 * 16 15 14 43 43 H 1.09007 * 109.46708 * 299.99847 * 17 16 15 44 44 H 1.08999 * 109.47334 * 60.00074 * 17 16 15 45 45 H 0.96998 * 119.99249 * 359.97438 * 18 17 16 46 46 H 0.96995 * 119.99919 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1963 -0.0024 5 6 4.2775 -0.0067 -0.0053 6 6 3.5828 -1.2033 -0.0020 7 6 2.1978 -1.1959 -0.0005 8 6 4.3011 -2.5289 0.0063 9 6 5.7551 -2.3308 -0.4320 10 6 6.3395 -1.1534 0.3587 11 1 6.2193 -1.3329 1.4270 12 6 7.8024 -0.9984 0.0315 13 8 8.1930 -0.0054 -0.5447 14 7 8.6766 -1.9635 0.3794 15 6 10.0987 -1.8126 0.0618 16 6 10.8658 -3.0382 0.5623 17 6 12.3512 -2.8803 0.2312 18 7 13.0857 -4.0541 0.7098 19 6 14.4399 -4.1367 0.5248 20 1 14.9666 -3.3368 0.0258 21 6 15.1358 -5.2488 0.9788 22 7 14.4941 -6.2235 1.5875 23 14 16.9832 -5.3618 0.7258 24 1 17.6801 -4.7590 1.8904 25 1 17.3786 -6.7872 0.5957 26 1 17.3594 -4.6290 -0.5097 27 8 5.6354 0.0328 -0.0121 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6592 2.1331 0.0022 32 1 4.1174 2.1322 -0.0028 33 1 1.6553 -2.1298 -0.0014 34 1 4.2798 -2.9466 1.0129 35 1 3.8054 -3.2145 -0.6808 36 1 5.7902 -2.1105 -1.4990 37 1 6.3288 -3.2340 -0.2240 38 1 8.3640 -2.7578 0.8399 39 1 10.2225 -1.7218 -1.0173 40 1 10.4868 -0.9178 0.5486 41 1 10.7421 -3.1286 1.6414 42 1 10.4779 -3.9331 0.0758 43 1 12.4753 -2.7897 -0.8480 44 1 12.7389 -1.9854 0.7180 45 1 12.6126 -4.7724 1.1584 46 1 14.9804 -7.0003 1.9050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162534804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:19 Heat of formation + Delta-G solvation = -54.473727 kcal Electronic energy + Delta-G solvation = -25210.544468 eV Core-core repulsion = 21485.836679 eV Total energy + Delta-G solvation = -3724.707789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29597 -39.65453 -37.93847 -36.06335 -34.88319 -34.31386 -32.68703 -32.03197 -30.97172 -29.58825 -27.92398 -26.21419 -24.96757 -23.84480 -22.81032 -22.54172 -21.30962 -20.72405 -19.88628 -18.27097 -17.78905 -16.97707 -16.75555 -15.96065 -15.73046 -15.50323 -15.10284 -14.82984 -14.63333 -14.50778 -14.20777 -14.00689 -13.93469 -13.60477 -13.32017 -13.28959 -13.04502 -12.90057 -12.69263 -12.44220 -12.04589 -11.73352 -11.70074 -11.50627 -11.28813 -10.99573 -10.95240 -10.82669 -10.78340 -10.65595 -10.11048 -9.87804 -9.71193 -9.18076 -9.14379 -8.90106 -8.33914 -6.95957 -5.79459 -3.08424 0.95970 1.05469 2.32927 2.39975 3.28297 3.42834 3.45937 3.48314 3.49811 4.08711 4.21780 4.28422 4.40988 4.53336 4.56830 4.57262 4.75186 4.79506 4.93932 5.03138 5.07015 5.11358 5.22962 5.25497 5.28039 5.35400 5.45010 5.55207 5.55822 5.56825 5.59430 5.71522 5.90805 5.92922 6.00887 6.06599 6.14228 6.25460 6.28104 6.31973 6.44340 6.75197 6.79383 7.07905 7.31948 7.68438 8.01453 8.39468 9.50767 10.07390 10.42092 11.43510 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.001721 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.651332 B =16265.526147 C =16773.204367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.141 4.141 5 C 0.129 3.871 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.076 4.076 9 C -0.150 4.150 10 C 0.076 3.924 11 H 0.099 0.901 12 C 0.519 3.481 13 O -0.517 6.517 14 N -0.721 5.721 15 C 0.124 3.876 16 C -0.137 4.137 17 C 0.156 3.844 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 O -0.288 6.288 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.816 9.861 -1.676 32.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.159 4.159 5 C 0.084 3.916 6 C -0.159 4.159 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.188 4.188 10 C 0.016 3.984 11 H 0.116 0.884 12 C 0.303 3.697 13 O -0.391 6.391 14 N -0.375 5.375 15 C 0.000 4.000 16 C -0.176 4.176 17 C 0.028 3.972 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 O -0.201 6.201 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -30.207 10.793 -2.213 32.154 hybrid contribution 0.723 -0.972 0.348 1.261 sum -29.484 9.821 -1.865 31.132 Atomic orbital electron populations 1.20720 0.91027 1.02645 1.02186 1.19795 0.96195 0.93002 1.03122 1.20818 0.92911 0.97846 0.99003 1.20614 0.93802 0.96500 1.05030 1.18738 0.81965 0.93520 0.97364 1.19814 0.94532 0.94145 1.07453 1.20756 0.92441 0.97834 0.99217 1.20505 0.93831 0.94114 1.02843 1.22245 0.96812 0.98043 1.01676 1.22240 0.90376 0.85570 1.00238 0.88381 1.19874 0.86624 0.83572 0.79672 1.90754 1.79268 1.29152 1.39940 1.45916 1.08594 1.22204 1.60754 1.21415 0.78000 0.99383 1.01154 1.21950 0.97157 0.96709 1.01746 1.20525 0.88186 0.91561 0.96961 1.42324 1.05386 1.19659 1.70404 1.19252 0.83923 1.02666 1.31379 0.91066 1.24750 0.98156 0.96887 1.01207 1.69657 1.34781 1.09330 1.44543 0.86163 0.85314 0.76790 0.77779 1.21674 1.21742 1.20707 1.86079 1.15337 1.35129 1.83598 0.91388 0.91711 0.91639 0.85394 0.84987 0.85792 0.89932 0.89388 0.89578 0.88788 0.76407 0.91090 0.91087 0.91195 0.91197 0.95995 0.95991 0.78309 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.12 -0.91 5.88 -104.65 -0.62 -1.52 16 3 C -0.09 -0.70 9.70 -39.66 -0.38 -1.08 16 4 C -0.14 -1.38 9.94 -39.34 -0.39 -1.78 16 5 C 0.13 1.41 6.47 -39.20 -0.25 1.16 16 6 C -0.16 -1.41 5.75 -104.44 -0.60 -2.01 16 7 C -0.08 -0.65 9.32 -39.53 -0.37 -1.02 16 8 C -0.08 -0.50 5.86 -27.77 -0.16 -0.67 16 9 C -0.15 -1.14 5.47 -26.45 -0.14 -1.28 16 10 C 0.08 0.76 3.21 -27.67 -0.09 0.67 16 11 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 12 C 0.52 6.62 7.19 -10.98 -0.08 6.54 16 13 O -0.52 -9.00 16.52 -14.20 -0.23 -9.24 16 14 N -0.72 -7.80 5.50 -60.30 -0.33 -8.13 16 15 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 16 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 17 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 18 N -0.73 -18.43 5.60 -59.90 -0.34 -18.76 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 O -0.29 -3.66 9.47 -39.03 -0.37 -4.03 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 38 H 0.40 3.13 8.27 -40.82 -0.34 2.79 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.38 9.98 7.67 -40.82 -0.31 9.67 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -34.86 382.56 -10.34 -45.20 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.37 Total: 5.33 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.17 Total: -6.14 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.06 Total: -54.25 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.60 Total: -13.27 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.86 -10.34 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162534804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.274 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds