Wall clock time and date at job start Tue Mar 31 2020 12:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 120.00836 * 2 1 4 4 C 1.37968 * 119.95942 * 180.11274 * 3 2 1 5 5 C 1.39147 * 120.21179 * 0.02562 * 4 3 2 6 6 C 1.38364 * 119.69887 * 359.81719 * 5 4 3 7 7 C 1.38104 * 120.00834 * 180.02562 * 2 1 3 8 8 C 1.50768 * 121.41012 * 180.50172 * 6 5 4 9 9 C 1.53151 * 109.69725 * 342.14958 * 8 6 5 10 10 C 1.53401 * 108.26320 * 48.17899 * 9 8 6 11 11 H 1.09002 * 109.68248 * 55.05949 * 10 9 8 12 12 C 1.50701 * 109.68407 * 175.57878 * 10 9 8 13 13 O 1.21270 * 120.00350 * 114.48023 * 12 10 9 14 14 N 1.34783 * 119.99509 * 294.48001 * 12 10 9 15 15 C 1.46496 * 119.99494 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47063 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.47248 * 180.02562 * 17 16 15 19 19 C 1.36930 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00428 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99694 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47282 * 89.99513 * 23 21 19 25 25 H 1.48494 * 109.47146 * 209.99757 * 23 21 19 26 26 H 1.48497 * 109.47194 * 329.99690 * 23 21 19 27 27 O 1.35850 * 118.49685 * 179.78019 * 5 4 3 28 28 H 1.08998 * 109.47089 * 89.99385 * 1 2 3 29 29 H 1.09004 * 109.46912 * 209.99747 * 1 2 3 30 30 H 1.09003 * 109.46619 * 329.99534 * 1 2 3 31 31 H 1.07997 * 120.02071 * 0.13770 * 3 2 1 32 32 H 1.08003 * 119.89214 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.83990 * 0.02562 * 7 2 1 34 34 H 1.09001 * 109.43274 * 102.19836 * 8 6 5 35 35 H 1.08992 * 109.44341 * 222.07448 * 8 6 5 36 36 H 1.09008 * 109.68456 * 288.50314 * 9 8 6 37 37 H 1.09003 * 109.75045 * 167.89115 * 9 8 6 38 38 H 0.96991 * 119.99896 * 0.02562 * 14 12 10 39 39 H 1.08996 * 109.47421 * 299.99651 * 15 14 12 40 40 H 1.08999 * 109.47387 * 60.00085 * 15 14 12 41 41 H 1.08997 * 109.47204 * 299.99583 * 16 15 14 42 42 H 1.08994 * 109.47345 * 60.00263 * 16 15 14 43 43 H 1.09007 * 109.46708 * 299.99847 * 17 16 15 44 44 H 1.08999 * 109.47334 * 60.00074 * 17 16 15 45 45 H 0.96998 * 119.99249 * 359.97438 * 18 17 16 46 46 H 0.96995 * 119.99919 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1963 -0.0024 5 6 4.2775 -0.0067 -0.0053 6 6 3.5828 -1.2033 -0.0020 7 6 2.1978 -1.1959 -0.0005 8 6 4.3011 -2.5289 0.0063 9 6 5.7551 -2.3308 -0.4320 10 6 6.3395 -1.1534 0.3587 11 1 6.2193 -1.3329 1.4270 12 6 7.8024 -0.9984 0.0315 13 8 8.1930 -0.0054 -0.5447 14 7 8.6766 -1.9635 0.3794 15 6 10.0987 -1.8126 0.0618 16 6 10.8658 -3.0382 0.5623 17 6 12.3512 -2.8803 0.2312 18 7 13.0857 -4.0541 0.7098 19 6 14.4399 -4.1367 0.5248 20 1 14.9666 -3.3368 0.0258 21 6 15.1358 -5.2488 0.9788 22 7 14.4941 -6.2235 1.5875 23 14 16.9832 -5.3618 0.7258 24 1 17.6801 -4.7590 1.8904 25 1 17.3786 -6.7872 0.5957 26 1 17.3594 -4.6290 -0.5097 27 8 5.6354 0.0328 -0.0121 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6592 2.1331 0.0022 32 1 4.1174 2.1322 -0.0028 33 1 1.6553 -2.1298 -0.0014 34 1 4.2798 -2.9466 1.0129 35 1 3.8054 -3.2145 -0.6808 36 1 5.7902 -2.1105 -1.4990 37 1 6.3288 -3.2340 -0.2240 38 1 8.3640 -2.7578 0.8399 39 1 10.2225 -1.7218 -1.0173 40 1 10.4868 -0.9178 0.5486 41 1 10.7421 -3.1286 1.6414 42 1 10.4779 -3.9331 0.0758 43 1 12.4753 -2.7897 -0.8480 44 1 12.7389 -1.9854 0.7180 45 1 12.6126 -4.7724 1.1584 46 1 14.9804 -7.0003 1.9050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162534804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:19 Heat of formation + Delta-G solvation = -76.499738 kcal Electronic energy + Delta-G solvation = -25211.499588 eV Core-core repulsion = 21485.836679 eV Total energy + Delta-G solvation = -3725.662909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04221 -40.58460 -38.66805 -37.49786 -36.03630 -35.35919 -33.83180 -33.16816 -31.89009 -30.99767 -28.65366 -27.15234 -26.29802 -24.58956 -24.22171 -23.32635 -22.61322 -21.77899 -20.56459 -19.25396 -18.99341 -18.46871 -17.53368 -17.05433 -16.82898 -16.52604 -16.18844 -15.85976 -15.57892 -15.34990 -15.27106 -15.15481 -14.84911 -14.65215 -14.59073 -14.19519 -13.97903 -13.75234 -13.45213 -13.31670 -13.14897 -12.82402 -12.65274 -12.57193 -12.43687 -12.30687 -12.09947 -12.05836 -12.04598 -11.90630 -11.79484 -11.43138 -10.94598 -10.89171 -10.23109 -9.74571 -9.01622 -8.99308 -7.96828 -5.25667 0.34856 0.40928 1.38151 1.47837 1.49439 1.51040 1.58180 2.51800 2.58063 2.76308 3.37245 3.44259 3.47200 3.70714 3.74508 3.78918 3.86177 4.03842 4.07911 4.19466 4.26266 4.27682 4.40014 4.44755 4.52571 4.58787 4.71586 4.71763 4.73646 4.85781 4.87063 4.90160 4.96403 5.02523 5.13800 5.17992 5.23129 5.31464 5.34106 5.35366 5.45282 5.49113 5.68237 5.86303 6.25981 6.32442 6.48727 7.07149 7.32891 8.07461 8.31580 9.26497 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.001721 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.651332 B =16265.526147 C =16773.204367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.162 4.162 5 C 0.098 3.902 6 C -0.164 4.164 7 C -0.090 4.090 8 C -0.073 4.073 9 C -0.144 4.144 10 C 0.076 3.924 11 H 0.123 0.877 12 C 0.518 3.482 13 O -0.572 6.572 14 N -0.705 5.705 15 C 0.134 3.866 16 C -0.117 4.117 17 C 0.150 3.850 18 N -0.746 5.746 19 C -0.251 4.251 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.271 1.271 27 O -0.322 6.322 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.420 0.580 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.376 0.624 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.563 8.866 -1.419 33.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.181 4.181 5 C 0.054 3.946 6 C -0.164 4.164 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.182 4.182 10 C 0.017 3.983 11 H 0.140 0.860 12 C 0.304 3.696 13 O -0.450 6.450 14 N -0.358 5.358 15 C 0.009 3.991 16 C -0.155 4.155 17 C 0.023 3.977 18 N -0.389 5.389 19 C -0.383 4.383 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.196 1.196 27 O -0.236 6.236 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.258 0.742 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.209 0.791 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -31.985 9.796 -1.952 33.508 hybrid contribution 1.192 -0.587 0.249 1.352 sum -30.793 9.209 -1.703 32.186 Atomic orbital electron populations 1.20771 0.89033 1.03683 1.02933 1.20190 0.97706 0.92735 1.01687 1.21080 0.92221 0.99209 0.98629 1.20789 0.94844 0.96306 1.06128 1.19021 0.81394 0.94768 0.99436 1.20125 0.95243 0.94421 1.06651 1.21103 0.92127 0.98998 0.98523 1.20596 0.92649 0.93212 1.04488 1.22261 0.98018 0.97773 1.00155 1.22355 0.88147 0.85930 1.01882 0.86005 1.20437 0.87963 0.82733 0.78476 1.90727 1.80335 1.31385 1.42557 1.45692 1.07457 1.22561 1.60122 1.21142 0.79112 0.98244 1.00561 1.21695 0.93913 0.97600 1.02304 1.20689 0.90849 0.89535 0.96588 1.42510 1.04898 1.20981 1.70482 1.19647 0.85518 1.02576 1.30584 0.90814 1.25554 1.02486 0.96830 1.01643 1.69796 1.36257 1.09814 1.45868 0.85143 0.80172 0.76505 0.77953 1.21352 1.21945 1.19611 1.86016 1.16591 1.36649 1.84372 0.90661 0.90538 0.90817 0.83550 0.85759 0.83326 0.87841 0.87585 0.91407 0.86194 0.74244 0.91788 0.91942 0.90443 0.90254 0.96036 0.96112 0.79140 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 71.24 0.71 -0.08 16 2 C -0.12 -1.63 5.88 -19.88 -0.12 -1.75 16 3 C -0.09 -1.44 9.70 22.22 0.22 -1.23 16 4 C -0.16 -3.33 9.94 22.42 0.22 -3.10 16 5 C 0.10 2.18 6.47 22.52 0.15 2.32 16 6 C -0.16 -2.68 5.75 -19.75 -0.11 -2.80 16 7 C -0.09 -1.19 9.32 22.30 0.21 -0.98 16 8 C -0.07 -0.77 5.86 29.92 0.18 -0.59 16 9 C -0.14 -1.94 5.47 30.78 0.17 -1.77 16 10 C 0.08 1.48 3.21 29.98 0.10 1.57 16 11 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 12 C 0.52 13.13 7.19 87.66 0.63 13.76 16 13 O -0.57 -20.64 16.52 15.90 0.26 -20.38 16 14 N -0.70 -14.29 5.50 -463.07 -2.55 -16.83 16 15 C 0.13 3.38 5.67 86.38 0.49 3.87 16 16 C -0.12 -3.25 5.44 30.60 0.17 -3.08 16 17 C 0.15 5.80 6.26 86.38 0.54 6.34 16 18 N -0.75 -37.29 5.60 -343.44 -1.92 -39.21 16 19 C -0.25 -14.07 9.99 84.04 0.84 -13.23 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16 23 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 O -0.32 -8.48 9.47 -72.97 -0.69 -9.17 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.40 8.09 -2.39 -0.02 0.39 16 30 H 0.07 0.43 8.09 -2.39 -0.02 0.42 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.12 0.94 7.91 -2.39 -0.02 0.92 16 38 H 0.42 5.47 8.27 -92.72 -0.77 4.70 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.38 19.58 7.67 -92.71 -0.71 18.87 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -76.72 382.56 1.77 -74.95 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.49 Total: 25.15 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.85 Total: -4.44 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -4.19 Total: -114.03 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.43 Total: -29.55 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.72 1.77 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162534804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.546 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds