Wall clock time and date at job start Tue Mar 31 2020 12:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99879 * 2 1 4 4 H 1.48504 * 109.47155 * 270.00384 * 3 2 1 5 5 H 1.48500 * 109.47117 * 30.00430 * 3 2 1 6 6 H 1.48497 * 109.46539 * 150.00254 * 3 2 1 7 7 C 1.38816 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99672 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99630 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47259 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47291 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.46871 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99987 * 179.97438 * 13 12 11 15 15 O 1.21614 * 119.99658 * 0.02562 * 14 13 12 16 16 C 1.47374 * 120.00031 * 180.02562 * 14 13 12 17 17 C 1.47019 * 127.19565 * 0.04553 * 16 14 13 18 18 C 1.34176 * 105.95733 * 179.97438 * 17 16 14 19 19 C 1.50692 * 125.43933 * 180.02562 * 18 17 16 20 20 C 1.53007 * 117.49814 * 188.61578 * 19 18 17 21 21 C 1.52998 * 60.00041 * 252.50761 * 20 19 18 22 22 O 1.34222 * 109.12301 * 359.97438 * 18 17 16 23 23 C 1.33653 * 110.90492 * 0.02562 * 22 18 17 24 24 C 1.50704 * 125.79683 * 180.26085 * 23 22 18 25 25 C 1.52999 * 117.49979 * 8.43595 * 24 23 22 26 26 C 1.53006 * 117.49687 * 299.77674 * 24 23 22 27 27 H 0.97006 * 120.00318 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00788 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46949 * 59.99955 * 10 9 7 30 30 H 1.09003 * 109.47221 * 300.00004 * 10 9 7 31 31 H 1.09003 * 109.46747 * 59.99747 * 11 10 9 32 32 H 1.09003 * 109.47063 * 300.00170 * 11 10 9 33 33 H 1.08996 * 109.46812 * 60.00503 * 12 11 10 34 34 H 1.08989 * 109.47334 * 299.99938 * 12 11 10 35 35 H 0.97006 * 120.00420 * 0.02562 * 13 12 11 36 36 H 1.08000 * 127.02328 * 359.97438 * 17 16 14 37 37 H 1.08996 * 115.55152 * 334.32927 * 19 18 17 38 38 H 1.08993 * 117.49978 * 0.02562 * 20 19 18 39 39 H 1.09003 * 117.49649 * 145.01872 * 20 19 18 40 40 H 1.08996 * 117.50513 * 252.50676 * 21 20 19 41 41 H 1.09004 * 117.51476 * 107.47951 * 21 20 19 42 42 H 1.08998 * 115.54679 * 154.10853 * 24 23 22 43 43 H 1.09002 * 117.49986 * 0.02562 * 25 24 23 44 44 H 1.09004 * 117.49489 * 145.02160 * 25 24 23 45 45 H 1.09002 * 117.49541 * 214.97854 * 26 24 23 46 46 H 1.08994 * 117.49796 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 6 1.8289 -6.1447 -0.0026 13 7 0.8769 -7.2582 -0.0011 14 6 1.3261 -8.5290 -0.0029 15 8 2.5218 -8.7511 -0.0052 16 6 0.3684 -9.6491 -0.0020 17 6 -1.0993 -9.5636 -0.0002 18 6 -1.5426 -10.8300 -0.0005 19 6 -2.9901 -11.2491 0.0004 20 6 -3.2953 -12.7346 0.2032 21 6 -3.4809 -12.0967 -1.1750 22 8 -0.4909 -11.6640 -0.0028 23 6 0.6585 -10.9820 -0.0036 24 6 2.0403 -11.5835 -0.0117 25 6 2.1515 -13.0953 -0.2188 26 6 2.4233 -12.4894 1.1604 27 1 -0.4851 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6854 -3.7148 0.8878 30 1 2.6841 -3.7141 -0.8922 31 1 0.4362 -4.7617 -0.8900 32 1 0.4382 -4.7622 0.8900 33 1 2.4568 -6.2029 0.8864 34 1 2.4542 -6.2020 -0.8935 35 1 -0.0769 -7.0810 0.0003 36 1 -1.6983 -8.6650 0.0011 37 1 -3.6878 -10.5287 0.4273 38 1 -2.4492 -13.4086 0.3364 39 1 -4.1940 -12.9918 0.7639 40 1 -4.5016 -11.9342 -1.5212 41 1 -2.7568 -12.3508 -1.9492 42 1 2.8229 -10.9577 -0.4408 43 1 1.2253 -13.6549 -0.3497 44 1 3.0076 -13.4642 -0.7840 45 1 3.4580 -12.4600 1.5020 46 1 1.6760 -12.6500 1.9374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162927137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:58 Heat of formation + Delta-G solvation = 10.603921 kcal Electronic energy + Delta-G solvation = -25242.266208 eV Core-core repulsion = 21520.380398 eV Total energy + Delta-G solvation = -3721.885811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.76773 -40.53379 -38.43304 -37.69922 -37.49146 -35.91172 -34.24538 -33.53684 -31.28160 -30.71821 -27.29605 -25.45655 -24.75315 -23.83650 -23.35218 -23.25624 -22.62548 -22.46642 -21.66317 -20.44547 -19.13753 -18.33759 -17.46302 -17.37526 -17.06485 -16.77649 -16.61301 -16.42629 -16.19176 -15.58269 -15.47966 -15.29804 -15.08207 -14.62932 -14.13730 -13.94402 -13.87178 -13.34461 -13.20353 -12.98181 -12.82371 -12.59042 -12.52514 -12.45043 -12.44408 -12.19609 -12.08650 -12.06357 -11.80469 -11.73395 -11.59137 -11.34926 -11.04729 -10.95210 -10.78182 -10.13934 -9.27673 -9.02667 -7.97050 -5.26354 0.18043 0.89110 1.47452 1.49340 1.50297 1.57950 2.14478 2.21714 2.56063 2.84698 2.92177 3.18282 3.36703 3.44662 3.69913 3.74744 3.82444 3.86246 3.95420 4.01657 4.03598 4.06850 4.18725 4.26933 4.38919 4.43829 4.65768 4.67185 4.71243 4.71814 4.74782 4.77156 4.87302 4.91607 4.99045 5.03241 5.11870 5.13112 5.20736 5.25213 5.27252 5.30194 5.39665 5.48441 5.97132 6.25627 6.49670 7.14806 7.31993 8.06458 8.30557 9.26480 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.002057 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.050630 B =13606.828924 C =14993.412390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.135 3.865 13 N -0.710 5.710 14 C 0.586 3.414 15 O -0.576 6.576 16 C -0.256 4.256 17 C -0.183 4.183 18 C 0.019 3.981 19 C -0.096 4.096 20 C -0.166 4.166 21 C -0.161 4.161 22 O -0.174 6.174 23 C 0.103 3.897 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.153 4.153 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -32.268 0.117 32.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.156 4.156 12 C 0.011 3.989 13 N -0.361 5.361 14 C 0.375 3.625 15 O -0.458 6.458 16 C -0.260 4.260 17 C -0.202 4.202 18 C -0.029 4.029 19 C -0.114 4.114 20 C -0.202 4.202 21 C -0.198 4.198 22 O -0.071 6.071 23 C 0.050 3.950 24 C -0.132 4.132 25 C -0.188 4.188 26 C -0.190 4.190 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.197 0.803 37 H 0.175 0.825 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.153 0.847 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.277 -32.606 0.122 33.030 hybrid contribution -0.267 1.654 -0.037 1.676 sum -5.545 -30.951 0.085 31.444 Atomic orbital electron populations 1.69809 1.06564 1.26207 1.59344 1.25609 0.96508 1.01209 1.03538 0.85108 0.77686 0.79264 0.77505 1.21283 1.21970 1.19491 1.19649 0.91579 0.85388 1.41490 0.90680 1.42544 1.05742 1.01161 1.89557 1.20672 0.94032 0.84667 0.98065 1.21700 0.98533 0.92143 1.03249 1.21124 0.91555 0.84079 1.02139 1.45704 1.11238 1.04700 1.74492 1.17433 0.87003 0.82655 0.75437 1.90723 1.17310 1.85246 1.52496 1.21080 0.94429 0.93057 1.17482 1.22758 0.91483 0.98638 1.07333 1.21699 0.88212 0.87790 1.05212 1.20749 0.86370 0.97133 1.07131 1.23102 1.04271 0.92879 0.99979 1.23171 1.03556 1.01632 0.91394 1.83606 1.13424 1.38260 1.71776 1.21868 0.86255 0.89181 0.97729 1.20805 0.88972 0.95022 1.08422 1.23170 1.04798 0.91542 0.99338 1.23158 1.03911 1.00306 0.91602 0.93880 0.79234 0.95916 0.95905 0.90774 0.90756 0.91717 0.91706 0.75079 0.80287 0.82489 0.89148 0.85851 0.85667 0.89410 0.84736 0.87819 0.85925 0.86354 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.46 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.16 9.99 84.04 0.84 -13.32 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.75 -38.41 5.60 -343.44 -1.92 -40.33 16 10 C 0.15 6.10 6.26 86.38 0.54 6.65 16 11 C -0.12 -3.60 5.44 30.59 0.17 -3.43 16 12 C 0.14 3.77 5.67 86.38 0.49 4.26 16 13 N -0.71 -17.85 5.55 -466.43 -2.59 -20.44 16 14 C 0.59 16.90 7.81 86.65 0.68 17.58 16 15 O -0.58 -19.95 14.92 -4.07 -0.06 -20.02 16 16 C -0.26 -6.40 6.31 -18.99 -0.12 -6.52 16 17 C -0.18 -3.54 10.48 23.65 0.25 -3.30 16 18 C 0.02 0.34 6.77 24.76 0.17 0.51 16 19 C -0.10 -1.10 6.23 -11.54 -0.07 -1.17 16 20 C -0.17 -1.54 10.16 30.60 0.31 -1.23 16 21 C -0.16 -1.51 10.23 30.59 0.31 -1.19 16 22 O -0.17 -3.63 9.91 4.40 0.04 -3.59 16 23 C 0.10 2.42 6.85 25.26 0.17 2.60 16 24 C -0.11 -2.39 5.62 -11.54 -0.06 -2.46 16 25 C -0.15 -2.16 10.17 30.62 0.31 -1.85 16 26 C -0.15 -2.42 10.24 30.62 0.31 -2.11 16 27 H 0.25 14.94 8.31 -92.70 -0.77 14.16 16 28 H 0.38 20.18 7.67 -92.71 -0.71 19.46 16 29 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.41 8.26 7.64 -92.70 -0.71 7.56 16 36 H 0.18 2.50 7.74 -2.91 -0.02 2.48 16 37 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.03 7.94 -2.39 -0.02 1.01 16 39 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.13 3.32 6.67 -2.39 -0.02 3.30 16 43 H 0.10 1.39 7.96 -2.39 -0.02 1.37 16 44 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.29 391.27 2.12 -70.18 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.42 Total: 33.81 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.76 Total: -8.95 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.23 Total: -119.89 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.02 Total: -23.60 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.29 2.12 -70.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162927137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.780 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds