Wall clock time and date at job start Tue Mar 31 2020 12:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48499 * 109.47410 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47197 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47036 * 60.00428 * 3 2 1 7 7 C 1.38816 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99674 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47113 * 175.59731 * 10 9 7 12 12 C 1.53007 * 115.54841 * 303.90246 * 11 10 9 13 13 C 1.53007 * 109.46868 * 278.03435 * 12 11 10 14 14 N 1.46496 * 109.47129 * 175.02415 * 13 12 11 15 15 C 1.34766 * 120.00402 * 179.97438 * 14 13 12 16 16 O 1.21621 * 119.99730 * 0.02562 * 15 14 13 17 17 C 1.47382 * 120.00507 * 179.97438 * 15 14 13 18 18 C 1.47018 * 127.19037 * 0.03398 * 17 15 14 19 19 C 1.34174 * 105.95388 * 179.97438 * 18 17 15 20 20 O 1.34214 * 109.12439 * 359.97438 * 19 18 17 21 21 C 1.33654 * 110.91039 * 359.76281 * 20 19 18 22 22 C 1.50693 * 125.80316 * 180.26460 * 21 20 19 23 23 C 1.53003 * 117.50165 * 8.76596 * 22 21 20 24 24 C 1.52995 * 117.50164 * 300.14268 * 22 21 20 25 25 C 1.52993 * 117.51880 * 89.60036 * 11 10 9 26 26 C 1.52993 * 117.49953 * 158.23088 * 11 10 9 27 27 H 0.96996 * 120.00217 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99892 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47157 * 55.59744 * 10 9 7 30 30 H 1.08994 * 109.47070 * 295.59879 * 10 9 7 31 31 H 1.08996 * 109.47176 * 158.03494 * 12 11 10 32 32 H 1.09001 * 109.47366 * 38.02944 * 12 11 10 33 33 H 1.08995 * 109.46992 * 55.02293 * 13 12 11 34 34 H 1.09001 * 109.46583 * 295.02452 * 13 12 11 35 35 H 0.97009 * 119.99921 * 359.97438 * 14 13 12 36 36 H 1.07999 * 127.02250 * 359.93013 * 18 17 15 37 37 H 1.08004 * 125.43973 * 180.02562 * 19 18 17 38 38 H 1.09001 * 115.54999 * 154.47214 * 22 21 20 39 39 H 1.08998 * 117.49381 * 0.02562 * 23 22 21 40 40 H 1.08995 * 117.49975 * 145.01498 * 23 22 21 41 41 H 1.09006 * 117.50494 * 214.97808 * 24 22 21 42 42 H 1.08999 * 117.50125 * 359.97438 * 24 22 21 43 43 H 1.09004 * 117.50148 * 214.97112 * 25 11 10 44 44 H 1.09004 * 117.50120 * 359.97438 * 25 11 10 45 45 H 1.08995 * 117.49978 * 359.97438 * 26 11 10 46 46 H 1.09004 * 117.50148 * 144.99650 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0678 -4.8176 0.1102 12 6 0.1322 -4.7736 1.3200 13 6 0.8592 -5.3269 2.5474 14 7 0.0069 -5.1756 3.7293 15 6 0.4429 -5.5967 4.9329 16 8 1.5442 -6.1021 5.0380 17 6 -0.4143 -5.4439 6.1220 18 6 -1.7623 -4.8597 6.1767 19 6 -2.1450 -4.9348 7.4605 20 8 -1.1648 -5.5043 8.1790 21 6 -0.1253 -5.8211 7.4008 22 6 1.1504 -6.4797 7.8588 23 6 1.1981 -7.0052 9.2949 24 6 1.9835 -5.7488 8.9135 25 6 0.5128 -5.3999 -1.1912 26 6 1.5340 -6.1924 -0.3727 27 1 -0.4850 0.8400 0.0004 28 1 0.3558 -2.3880 -0.0005 29 1 2.7428 -3.6810 0.8474 30 1 2.6245 -3.7493 -0.9273 31 1 -0.7517 -5.3785 1.1180 32 1 -0.1683 -3.7431 1.5098 33 1 1.7889 -4.7780 2.6971 34 1 1.0816 -6.3827 2.3925 35 1 -0.8713 -4.7722 3.6455 36 1 -2.3285 -4.4525 5.3521 37 1 -3.0911 -4.5924 7.8530 38 1 1.6868 -7.0459 7.0973 39 1 0.3065 -6.8749 9.9083 40 1 1.7658 -7.9173 9.4785 41 1 3.0682 -5.8344 8.8463 42 1 1.6092 -4.7914 9.2759 43 1 -0.5189 -5.7517 -1.1856 44 1 0.8529 -4.9557 -2.1267 45 1 2.5461 -6.2699 -0.7697 46 1 1.1741 -7.0657 0.1714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166849197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:49 Heat of formation + Delta-G solvation = 33.749366 kcal Electronic energy + Delta-G solvation = -25980.702048 eV Core-core repulsion = 22259.819900 eV Total energy + Delta-G solvation = -3720.882149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.78366 -39.38751 -38.19475 -37.32059 -34.72001 -33.92550 -33.08688 -30.78384 -30.05193 -29.67409 -26.01243 -24.63585 -23.15826 -22.85590 -22.69975 -22.53231 -21.75538 -20.64684 -19.93546 -18.58440 -17.84688 -17.07300 -16.47595 -16.20110 -15.83616 -15.54610 -15.40719 -14.96839 -14.78115 -14.37766 -14.14007 -13.77427 -13.31557 -13.15723 -13.01014 -12.77733 -12.66230 -12.33557 -12.26523 -11.84323 -11.82932 -11.41733 -11.18469 -11.10673 -10.92297 -10.84347 -10.73668 -10.56478 -10.11897 -9.97244 -9.91386 -9.86816 -9.62519 -9.31396 -8.95901 -8.83202 -8.61110 -6.88799 -5.75439 -3.02892 1.18094 1.88484 2.53969 3.30148 3.33010 3.44237 3.50340 3.52210 3.65518 4.07805 4.11771 4.47151 4.62208 4.64740 4.68905 4.71628 5.01033 5.05254 5.11820 5.18167 5.23628 5.34358 5.36049 5.49050 5.52900 5.58010 5.65077 5.71875 5.78693 5.80101 5.82361 5.87836 5.92662 6.09165 6.18305 6.21255 6.24811 6.44700 6.47142 6.53458 6.64429 6.78838 6.83209 6.85637 7.61830 7.72573 8.31474 8.43899 9.55626 10.13838 10.49483 11.47595 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.002943 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.908587 B = 9511.825424 C =10633.738666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.127 3.873 14 N -0.718 5.718 15 C 0.588 3.412 16 O -0.544 6.544 17 C -0.234 4.234 18 C -0.186 4.186 19 C -0.040 4.040 20 O -0.176 6.176 21 C 0.104 3.896 22 C -0.087 4.087 23 C -0.172 4.172 24 C -0.159 4.159 25 C -0.167 4.167 26 C -0.178 4.178 27 H 0.253 0.747 28 H 0.384 0.616 29 H 0.026 0.974 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.159 0.841 37 H 0.209 0.791 38 H 0.152 0.848 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -15.808 14.778 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.005 3.995 14 N -0.369 5.369 15 C 0.376 3.624 16 O -0.424 6.424 17 C -0.238 4.238 18 C -0.205 4.205 19 C -0.105 4.105 20 O -0.073 6.073 21 C 0.052 3.948 22 C -0.104 4.104 23 C -0.209 4.209 24 C -0.196 4.196 25 C -0.204 4.204 26 C -0.215 4.215 27 H 0.063 0.937 28 H 0.218 0.782 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.177 0.823 37 H 0.225 0.775 38 H 0.170 0.830 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.379 -16.088 15.126 22.339 hybrid contribution -0.583 1.408 -0.413 1.579 sum -3.962 -14.680 14.712 21.158 Atomic orbital electron populations 1.69663 1.05052 1.25414 1.58154 1.24709 0.95519 0.97589 1.03207 0.86137 0.78857 0.84220 0.77133 1.20569 1.21931 1.21920 1.19285 0.91070 0.84166 1.42162 0.91211 1.42311 1.05879 0.99683 1.89307 1.20177 0.91892 0.84187 0.97732 1.21560 1.00871 0.94875 0.94568 1.21270 0.96720 1.02976 0.92048 1.21353 0.94234 1.00875 0.83083 1.45813 1.20890 1.62554 1.07595 1.17142 0.85294 0.77853 0.82099 1.90741 1.20823 1.45073 1.85747 1.21131 0.97183 1.11306 0.94201 1.22922 0.95036 1.04534 0.98012 1.23847 0.93502 1.02364 0.90800 1.83707 1.22991 1.61469 1.39085 1.21672 0.88192 0.97012 0.87972 1.20814 0.91565 1.03861 0.94209 1.23068 1.03153 0.98576 0.96099 1.23059 0.99030 0.96809 1.00678 1.22994 0.98229 1.03509 0.95632 1.22961 0.99648 0.94498 1.04404 0.93666 0.78158 0.95622 0.96460 0.92023 0.89207 0.90856 0.91777 0.76547 0.82313 0.77467 0.83015 0.88179 0.87741 0.87447 0.88400 0.89336 0.88706 0.88942 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.25 5.23 -59.91 -0.31 -18.56 16 10 C 0.19 3.82 6.15 -4.04 -0.02 3.80 16 11 C -0.12 -1.90 1.65 -154.51 -0.25 -2.15 16 12 C -0.09 -1.38 5.20 -26.72 -0.14 -1.52 16 13 C 0.13 1.90 5.49 -4.04 -0.02 1.87 16 14 N -0.72 -9.99 5.55 -61.40 -0.34 -10.34 16 15 C 0.59 9.02 7.81 -12.54 -0.10 8.93 16 16 O -0.54 -9.71 14.92 5.26 0.08 -9.63 16 17 C -0.23 -3.10 6.31 -103.28 -0.65 -3.76 16 18 C -0.19 -1.93 10.60 -37.46 -0.40 -2.32 16 19 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 20 O -0.18 -1.93 10.23 7.65 0.08 -1.85 16 21 C 0.10 1.30 6.85 -34.97 -0.24 1.06 16 22 C -0.09 -0.96 5.62 -91.78 -0.52 -1.48 16 23 C -0.17 -1.42 10.17 -26.73 -0.27 -1.69 16 24 C -0.16 -1.47 10.23 -26.73 -0.27 -1.74 16 25 C -0.17 -2.42 9.87 -26.74 -0.26 -2.69 16 26 C -0.18 -2.38 9.57 -26.74 -0.26 -2.64 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.38 10.04 6.80 -40.82 -0.28 9.76 16 29 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 30 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.09 1.58 6.94 -51.93 -0.36 1.22 16 33 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 34 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 35 H 0.40 4.72 7.64 -40.82 -0.31 4.41 16 36 H 0.16 1.30 7.74 -52.49 -0.41 0.90 16 37 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.15 1.87 6.67 -51.93 -0.35 1.53 16 39 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -33.22 387.22 -9.35 -42.57 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.09 Total: 13.32 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.30 Total: -11.62 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.07 Total: -56.17 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.16 Total: -11.48 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.22 -9.35 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166849197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.318 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds