Wall clock time and date at job start Tue Mar 31 2020 12:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48499 * 109.47410 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47197 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47036 * 60.00428 * 3 2 1 7 7 C 1.38816 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99674 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47113 * 175.59731 * 10 9 7 12 12 C 1.53007 * 115.54841 * 303.90246 * 11 10 9 13 13 C 1.53007 * 109.46868 * 278.03435 * 12 11 10 14 14 N 1.46496 * 109.47129 * 175.02415 * 13 12 11 15 15 C 1.34766 * 120.00402 * 179.97438 * 14 13 12 16 16 O 1.21621 * 119.99730 * 0.02562 * 15 14 13 17 17 C 1.47382 * 120.00507 * 179.97438 * 15 14 13 18 18 C 1.47018 * 127.19037 * 0.03398 * 17 15 14 19 19 C 1.34174 * 105.95388 * 179.97438 * 18 17 15 20 20 O 1.34214 * 109.12439 * 359.97438 * 19 18 17 21 21 C 1.33654 * 110.91039 * 359.76281 * 20 19 18 22 22 C 1.50693 * 125.80316 * 180.26460 * 21 20 19 23 23 C 1.53003 * 117.50165 * 8.76596 * 22 21 20 24 24 C 1.52995 * 117.50164 * 300.14268 * 22 21 20 25 25 C 1.52993 * 117.51880 * 89.60036 * 11 10 9 26 26 C 1.52993 * 117.49953 * 158.23088 * 11 10 9 27 27 H 0.96996 * 120.00217 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99892 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47157 * 55.59744 * 10 9 7 30 30 H 1.08994 * 109.47070 * 295.59879 * 10 9 7 31 31 H 1.08996 * 109.47176 * 158.03494 * 12 11 10 32 32 H 1.09001 * 109.47366 * 38.02944 * 12 11 10 33 33 H 1.08995 * 109.46992 * 55.02293 * 13 12 11 34 34 H 1.09001 * 109.46583 * 295.02452 * 13 12 11 35 35 H 0.97009 * 119.99921 * 359.97438 * 14 13 12 36 36 H 1.07999 * 127.02250 * 359.93013 * 18 17 15 37 37 H 1.08004 * 125.43973 * 180.02562 * 19 18 17 38 38 H 1.09001 * 115.54999 * 154.47214 * 22 21 20 39 39 H 1.08998 * 117.49381 * 0.02562 * 23 22 21 40 40 H 1.08995 * 117.49975 * 145.01498 * 23 22 21 41 41 H 1.09006 * 117.50494 * 214.97808 * 24 22 21 42 42 H 1.08999 * 117.50125 * 359.97438 * 24 22 21 43 43 H 1.09004 * 117.50148 * 214.97112 * 25 11 10 44 44 H 1.09004 * 117.50120 * 359.97438 * 25 11 10 45 45 H 1.08995 * 117.49978 * 359.97438 * 26 11 10 46 46 H 1.09004 * 117.50148 * 144.99650 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0678 -4.8176 0.1102 12 6 0.1322 -4.7736 1.3200 13 6 0.8592 -5.3269 2.5474 14 7 0.0069 -5.1756 3.7293 15 6 0.4429 -5.5967 4.9329 16 8 1.5442 -6.1021 5.0380 17 6 -0.4143 -5.4439 6.1220 18 6 -1.7623 -4.8597 6.1767 19 6 -2.1450 -4.9348 7.4605 20 8 -1.1648 -5.5043 8.1790 21 6 -0.1253 -5.8211 7.4008 22 6 1.1504 -6.4797 7.8588 23 6 1.1981 -7.0052 9.2949 24 6 1.9835 -5.7488 8.9135 25 6 0.5128 -5.3999 -1.1912 26 6 1.5340 -6.1924 -0.3727 27 1 -0.4850 0.8400 0.0004 28 1 0.3558 -2.3880 -0.0005 29 1 2.7428 -3.6810 0.8474 30 1 2.6245 -3.7493 -0.9273 31 1 -0.7517 -5.3785 1.1180 32 1 -0.1683 -3.7431 1.5098 33 1 1.7889 -4.7780 2.6971 34 1 1.0816 -6.3827 2.3925 35 1 -0.8713 -4.7722 3.6455 36 1 -2.3285 -4.4525 5.3521 37 1 -3.0911 -4.5924 7.8530 38 1 1.6868 -7.0459 7.0973 39 1 0.3065 -6.8749 9.9083 40 1 1.7658 -7.9173 9.4785 41 1 3.0682 -5.8344 8.8463 42 1 1.6092 -4.7914 9.2759 43 1 -0.5189 -5.7517 -1.1856 44 1 0.8529 -4.9557 -2.1267 45 1 2.5461 -6.2699 -0.7697 46 1 1.1741 -7.0657 0.1714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166849197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:48 Heat of formation + Delta-G solvation = 13.419733 kcal Electronic energy + Delta-G solvation = -25981.583608 eV Core-core repulsion = 22259.819900 eV Total energy + Delta-G solvation = -3721.763708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.61461 -40.58584 -39.48717 -38.07255 -36.09322 -35.73870 -33.97839 -32.79687 -31.12258 -30.62075 -27.84536 -25.77134 -24.62645 -24.04971 -23.77201 -23.33279 -22.90146 -21.64900 -20.93241 -19.89188 -19.11532 -18.75171 -17.35383 -17.22460 -16.90202 -16.79055 -16.52860 -16.31937 -16.06149 -15.67279 -15.48657 -15.08174 -14.77141 -14.69544 -14.19281 -14.01102 -13.91996 -13.52855 -13.16696 -13.13013 -12.98832 -12.82607 -12.56131 -12.49037 -12.27230 -12.09653 -11.95610 -11.93765 -11.84433 -11.50838 -11.12922 -11.04772 -10.91437 -10.85428 -10.54739 -10.12975 -9.45685 -8.97367 -7.95343 -5.22588 0.23506 1.09895 1.45919 1.46171 1.56240 1.72464 2.21065 2.26576 2.53939 2.87245 2.90082 3.37120 3.37954 3.67999 3.73636 3.83413 3.84986 3.90467 3.98733 3.99186 4.08282 4.20773 4.26552 4.40034 4.47509 4.50985 4.61722 4.68451 4.75722 4.82624 4.84131 4.93923 4.97659 5.00933 5.06333 5.07965 5.15575 5.18940 5.26179 5.33636 5.34079 5.37422 5.44187 5.49015 5.99441 6.27451 6.51477 7.16873 7.34620 8.10430 8.36579 9.28068 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.002943 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.908587 B = 9511.825424 C =10633.738666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.141 4.141 12 C -0.078 4.078 13 C 0.137 3.863 14 N -0.712 5.712 15 C 0.582 3.418 16 O -0.579 6.579 17 C -0.265 4.265 18 C -0.200 4.200 19 C -0.026 4.026 20 O -0.177 6.177 21 C 0.098 3.902 22 C -0.115 4.115 23 C -0.147 4.147 24 C -0.159 4.159 25 C -0.162 4.162 26 C -0.151 4.151 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.177 0.823 37 H 0.253 0.747 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -16.717 15.683 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.062 3.938 11 C -0.142 4.142 12 C -0.115 4.115 13 C 0.014 3.986 14 N -0.363 5.363 15 C 0.372 3.628 16 O -0.461 6.461 17 C -0.269 4.269 18 C -0.219 4.219 19 C -0.090 4.090 20 O -0.073 6.073 21 C 0.045 3.955 22 C -0.133 4.133 23 C -0.184 4.184 24 C -0.196 4.196 25 C -0.199 4.199 26 C -0.189 4.189 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.194 0.806 37 H 0.269 0.731 38 H 0.150 0.850 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.273 -17.014 16.023 23.758 hybrid contribution -0.281 1.651 -0.685 1.810 sum -4.555 -15.362 15.338 22.181 Atomic orbital electron populations 1.69800 1.06324 1.25902 1.59490 1.25475 0.96423 1.00724 1.03752 0.85142 0.78157 0.80134 0.76754 1.19484 1.21826 1.21987 1.19627 0.91319 0.85566 1.41168 0.91291 1.42446 1.05677 1.00595 1.89093 1.20223 0.92641 0.84164 0.96810 1.21391 1.01430 0.95076 0.96258 1.21106 0.97359 1.01563 0.91509 1.21181 0.93157 1.00826 0.83479 1.45748 1.21171 1.62238 1.07109 1.17534 0.85174 0.77228 0.82907 1.90710 1.22345 1.46715 1.86317 1.21184 0.98646 1.13288 0.93792 1.23177 0.94032 1.05193 0.99521 1.24711 0.93906 1.00221 0.90206 1.83728 1.23006 1.61485 1.39123 1.21875 0.88832 0.96770 0.88016 1.20769 0.91827 1.05474 0.95205 1.23167 1.03087 0.98696 0.93448 1.23141 0.99460 0.97352 0.99629 1.23057 0.99691 1.03052 0.94139 1.23050 0.99791 0.93292 1.02723 0.93987 0.78995 0.96757 0.96722 0.89224 0.92266 0.94035 0.90772 0.75320 0.80551 0.73140 0.84963 0.87442 0.85894 0.86674 0.88500 0.87353 0.89802 0.88442 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.68 13.06 21.65 0.28 -58.40 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.73 5.23 -343.45 -1.80 -39.53 16 10 C 0.19 7.81 6.15 86.38 0.53 8.34 16 11 C -0.14 -4.44 1.65 -52.18 -0.09 -4.53 16 12 C -0.08 -2.29 5.20 30.60 0.16 -2.13 16 13 C 0.14 4.11 5.49 86.38 0.47 4.59 16 14 N -0.71 -20.07 5.55 -466.42 -2.59 -22.66 16 15 C 0.58 18.41 7.81 86.65 0.68 19.08 16 16 O -0.58 -21.61 14.92 -4.10 -0.06 -21.67 16 17 C -0.26 -7.07 6.31 -18.99 -0.12 -7.19 16 18 C -0.20 -3.90 10.60 23.65 0.25 -3.65 16 19 C -0.03 -0.40 12.03 66.89 0.80 0.41 16 20 O -0.18 -3.61 10.23 4.46 0.05 -3.57 16 21 C 0.10 2.43 6.85 25.26 0.17 2.60 16 22 C -0.11 -2.58 5.62 -11.54 -0.06 -2.65 16 23 C -0.15 -2.24 10.17 30.59 0.31 -1.93 16 24 C -0.16 -2.87 10.23 30.59 0.31 -2.55 16 25 C -0.16 -4.43 9.87 30.59 0.30 -4.12 16 26 C -0.15 -3.71 9.57 30.59 0.29 -3.42 16 27 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.38 20.22 6.80 -92.71 -0.63 19.59 16 29 H 0.01 0.63 7.96 -2.39 -0.02 0.61 16 30 H 0.01 0.62 8.10 -2.39 -0.02 0.61 16 31 H 0.09 2.14 7.93 -2.39 -0.02 2.12 16 32 H 0.06 2.13 6.94 -2.39 -0.02 2.11 16 33 H 0.04 1.51 7.96 -2.39 -0.02 1.49 16 34 H 0.07 2.08 7.72 -2.39 -0.02 2.06 16 35 H 0.41 9.65 7.64 -92.70 -0.71 8.94 16 36 H 0.18 2.61 7.74 -2.91 -0.02 2.59 16 37 H 0.25 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.13 3.48 6.67 -2.39 -0.02 3.46 16 39 H 0.11 1.49 7.96 -2.39 -0.02 1.47 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.53 8.07 -2.38 -0.02 2.51 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.11 2.31 7.90 -2.39 -0.02 2.29 16 Total: -1.00 -73.50 387.22 2.90 -70.60 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.34 Total: 40.33 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.32 Total: -13.95 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -4.10 Total: -120.59 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.02 Total: -25.24 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.50 2.90 -70.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166849197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.024 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds