Wall clock time and date at job start Tue Mar 31 2020 13:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00171 * 2 1 4 4 O 1.20824 * 119.99883 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00045 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.52034 * 34.50239 * 5 3 2 7 7 C 1.38861 * 120.00017 * 60.43285 * 6 5 3 8 8 C 1.39589 * 119.84079 * 352.45853 * 7 6 5 9 9 C 1.36325 * 120.16041 * 179.76098 * 8 7 6 10 10 C 1.40901 * 119.83147 * 0.52222 * 9 8 7 11 11 C 1.41141 * 120.15272 * 179.75907 * 10 9 8 12 12 H 1.08005 * 119.99965 * 148.65098 * 11 10 9 13 13 C 1.39866 * 120.00068 * 328.64860 * 11 10 9 14 14 N 1.30900 * 119.99830 * 163.16726 * 13 11 10 15 15 Si 1.86802 * 120.00052 * 343.16805 * 13 11 10 16 16 H 1.48493 * 109.47257 * 93.92523 * 15 13 11 17 17 H 1.48495 * 109.47219 * 213.92929 * 15 13 11 18 18 H 1.48508 * 109.46729 * 333.92722 * 15 13 11 19 19 C 1.40866 * 119.69224 * 359.73759 * 10 9 8 20 20 C 1.50701 * 120.08101 * 180.02562 * 19 10 9 21 21 C 1.36360 * 119.83689 * 359.97438 * 19 10 9 22 22 C 1.53116 * 109.52492 * 274.31024 * 5 3 2 23 23 C 1.53035 * 109.27846 * 182.44084 * 22 5 3 24 24 N 1.46849 * 109.52609 * 59.18232 * 23 22 5 25 25 C 1.46851 * 111.19382 * 298.25880 * 24 23 22 26 26 C 1.53038 * 109.52529 * 61.74115 * 25 24 23 27 27 H 1.08993 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46909 * 300.00016 * 1 2 3 29 29 H 1.08999 * 109.46907 * 59.99141 * 1 2 3 30 30 H 0.96997 * 120.00111 * 240.42011 * 6 5 3 31 31 H 1.07999 * 119.91932 * 0.03524 * 8 7 6 32 32 H 1.08001 * 120.08332 * 180.23868 * 9 8 7 33 33 H 0.97008 * 119.99718 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47475 * 269.97400 * 20 19 10 35 35 H 1.08998 * 109.47727 * 29.97924 * 20 19 10 36 36 H 1.09006 * 109.46859 * 149.97596 * 20 19 10 37 37 H 1.08001 * 119.91982 * 180.02562 * 21 19 10 38 38 H 1.08992 * 109.50553 * 302.38239 * 22 5 3 39 39 H 1.09001 * 109.50306 * 62.49921 * 22 5 3 40 40 H 1.09003 * 109.46296 * 299.16456 * 23 22 5 41 41 H 1.09005 * 109.45660 * 179.19525 * 23 22 5 42 42 H 1.00894 * 110.99587 * 62.34847 * 24 23 22 43 43 H 1.09004 * 109.45831 * 301.72292 * 25 24 23 44 44 H 1.08995 * 109.44991 * 181.75146 * 25 24 23 45 45 H 1.08995 * 109.50265 * 180.87762 * 26 25 24 46 46 H 1.08997 * 109.50156 * 60.75738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1151 0.1639 -0.7811 7 6 3.7945 0.0365 -2.1262 8 6 2.8293 0.8709 -2.6923 9 6 2.5130 0.7547 -4.0133 10 6 3.1553 -0.2181 -4.8048 11 6 2.8294 -0.3477 -6.1719 12 1 3.5802 -0.6711 -6.8777 13 6 1.5341 -0.0575 -6.6127 14 7 1.3061 0.1457 -7.8856 15 14 0.1296 0.0402 -5.3849 16 1 -0.0569 1.4499 -4.9573 17 1 -1.1184 -0.4537 -6.0202 18 1 0.4479 -0.7982 -4.2012 19 6 4.1244 -1.0604 -4.2254 20 6 4.8171 -2.1035 -5.0640 21 6 4.4349 -0.9289 -2.9041 22 6 4.0825 1.1936 1.4398 23 6 5.6063 1.3353 1.4389 24 7 5.9791 2.6224 0.8382 25 6 5.5353 2.7045 -0.5592 26 6 4.0094 2.6037 -0.6179 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 4.7024 -0.4825 -0.3592 31 1 2.3350 1.6134 -2.0834 32 1 1.7688 1.4036 -4.4509 33 1 0.4076 0.3466 -8.1913 34 1 4.2512 -3.0343 -5.0267 35 1 4.8798 -1.7574 -6.0957 36 1 5.8215 -2.2732 -4.6760 37 1 5.1780 -1.5736 -2.4586 38 1 3.6427 1.9974 2.0301 39 1 3.8067 0.2315 1.8716 40 1 6.0462 0.5233 0.8599 41 1 5.9756 1.2922 2.4636 42 1 5.6154 3.3926 1.3790 43 1 5.9756 1.8861 -1.1288 44 1 5.8531 3.6559 -0.9856 45 1 3.6814 2.6491 -1.6564 46 1 3.5684 3.4297 -0.0600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166954250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:33 Heat of formation + Delta-G solvation = -53.877548 kcal Electronic energy + Delta-G solvation = -28535.567490 eV Core-core repulsion = 24810.885553 eV Total energy + Delta-G solvation = -3724.681937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.10833 -38.97352 -37.98628 -36.27022 -34.95259 -33.18592 -31.73942 -31.03949 -30.87043 -28.61829 -27.79161 -26.27718 -24.57726 -24.13456 -23.04778 -21.51817 -21.35345 -20.24484 -19.01549 -17.52507 -17.45102 -17.04760 -16.65264 -15.89564 -15.85128 -15.11564 -14.60947 -14.54089 -14.22775 -13.96683 -13.77984 -13.35256 -13.26299 -12.97787 -12.85034 -12.62368 -12.46491 -12.37078 -12.28456 -11.95589 -11.78722 -11.51359 -11.39498 -11.19482 -11.11354 -11.03232 -10.75736 -10.66475 -10.62030 -10.34701 -10.16764 -9.84690 -9.42519 -9.25826 -8.76877 -8.53583 -7.64711 -6.79559 -6.70961 -4.21217 2.27100 2.61206 2.66817 2.89523 3.17199 3.24907 3.36763 3.81869 4.07028 4.18422 4.46984 4.52815 4.68826 4.71723 4.95770 5.12474 5.17462 5.27636 5.30409 5.41824 5.44330 5.50458 5.58854 5.63191 5.76936 5.82591 5.90444 5.92788 6.11431 6.18029 6.25703 6.38844 6.50315 6.57635 6.62200 6.82144 6.87152 6.90457 7.03222 7.21618 7.24192 7.38896 7.58384 7.80552 7.88302 8.02527 8.18872 8.38168 8.49169 8.78405 8.95085 10.24556 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005217 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.625547 B = 5365.556295 C = 6267.157758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.339 6.339 3 C 0.460 3.540 4 O -0.519 6.519 5 C 0.211 3.789 6 N -0.734 5.734 7 C 0.095 3.905 8 C -0.151 4.151 9 C -0.196 4.196 10 C 0.066 3.934 11 C -0.450 4.450 12 H 0.091 0.909 13 C 0.085 3.915 14 N -0.823 5.823 15 Si 0.902 3.098 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.247 1.247 19 C -0.137 4.137 20 C -0.088 4.088 21 C -0.135 4.135 22 C -0.156 4.156 23 C 0.064 3.936 24 N -0.684 5.684 25 C 0.065 3.935 26 C -0.164 4.164 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.393 0.607 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.281 0.719 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.338 0.662 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 0.645 17.330 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.254 6.254 3 C 0.302 3.698 4 O -0.407 6.407 5 C 0.119 3.881 6 N -0.372 5.372 7 C -0.001 4.001 8 C -0.172 4.172 9 C -0.216 4.216 10 C 0.063 3.937 11 C -0.480 4.480 12 H 0.109 0.891 13 C -0.131 4.131 14 N -0.449 5.449 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.221 1.221 18 H -0.170 1.170 19 C -0.139 4.139 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.196 4.196 23 C -0.067 4.067 24 N -0.312 5.312 25 C -0.064 4.064 26 C -0.205 4.205 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.155 0.845 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.173 0.897 16.914 17.444 hybrid contribution -2.159 0.118 0.625 2.251 sum 2.013 1.014 17.539 17.684 Atomic orbital electron populations 1.23241 0.77300 1.03531 1.02068 1.86605 1.22509 1.33146 1.83171 1.24680 0.92750 0.81439 0.70961 1.90638 1.67100 1.36607 1.46402 1.19758 0.84625 0.90387 0.93287 1.43785 1.56515 1.29381 1.07479 1.17117 0.99595 1.00294 0.83130 1.20082 0.99872 1.01371 0.95886 1.20612 1.05269 1.01552 0.94143 1.17503 0.92434 0.90442 0.93317 1.19292 0.96874 1.39712 0.92154 0.89074 1.25999 1.00411 0.91202 0.95527 1.69723 1.23553 1.35619 1.16023 0.86462 0.79243 0.79546 0.81773 1.20087 1.22092 1.17025 1.19359 1.02590 0.99081 0.92876 1.20461 0.97249 0.96927 0.99852 1.19762 1.01982 1.00017 0.93861 1.22493 0.99653 1.03992 0.93457 1.21996 0.91164 0.93164 1.00338 1.60660 1.62880 1.04094 1.03564 1.21973 0.91637 1.03295 0.89487 1.22731 0.98791 0.94736 1.04202 0.88273 0.92397 0.91995 0.77166 0.89084 0.88323 0.90908 0.93139 0.91677 0.94197 0.88640 0.90317 0.89954 0.90153 0.90194 0.84469 0.89570 0.90366 0.88742 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.52 16 2 O -0.34 -5.67 10.15 -39.27 -0.40 -6.07 16 3 C 0.46 7.73 4.04 36.01 0.15 7.88 16 4 O -0.52 -9.73 15.44 -18.75 -0.29 -10.01 16 5 C 0.21 2.95 0.63 -132.85 -0.08 2.87 16 6 N -0.73 -10.99 4.04 -46.81 -0.19 -11.18 16 7 C 0.09 1.83 6.17 -83.69 -0.52 1.31 16 8 C -0.15 -3.28 7.17 -39.77 -0.29 -3.57 16 9 C -0.20 -4.79 7.11 -39.26 -0.28 -5.07 16 10 C 0.07 1.67 5.08 -106.79 -0.54 1.12 16 11 C -0.45 -12.15 8.88 -37.87 -0.34 -12.48 16 12 H 0.09 2.55 6.56 -52.48 -0.34 2.21 16 13 C 0.08 2.28 5.41 -17.34 -0.09 2.18 16 14 N -0.82 -22.55 13.93 55.54 0.77 -21.77 16 15 Si 0.90 21.65 24.52 -169.99 -4.17 17.48 16 16 H -0.27 -6.55 6.67 56.52 0.38 -6.17 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.25 -6.05 6.90 56.52 0.39 -5.66 16 19 C -0.14 -3.05 5.90 -104.30 -0.62 -3.67 16 20 C -0.09 -1.72 9.61 36.01 0.35 -1.38 16 21 C -0.13 -2.66 9.47 -39.77 -0.38 -3.04 16 22 C -0.16 -1.60 4.89 -26.65 -0.13 -1.73 16 23 C 0.06 0.57 6.39 -3.83 -0.02 0.55 16 24 N -0.68 -6.87 6.87 -113.81 -0.78 -7.65 16 25 C 0.07 0.79 6.41 -3.83 -0.02 0.77 16 26 C -0.16 -2.32 4.15 -26.65 -0.11 -2.43 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.70 8.13 -51.92 -0.42 0.28 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.39 5.06 7.50 -40.82 -0.31 4.76 16 31 H 0.09 1.96 3.90 -52.49 -0.20 1.76 16 32 H 0.10 2.50 4.78 -52.49 -0.25 2.25 16 33 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.34 6.31 -51.93 -0.33 1.01 16 36 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.76 7.03 -51.93 -0.37 0.39 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.34 2.96 8.86 -39.29 -0.35 2.61 16 43 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.62 5.21 -51.93 -0.27 1.35 16 46 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -29.80 352.68 -8.21 -38.01 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.62 Total: 11.05 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.86 Total: -15.18 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.20 Total: -40.60 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.69 Total: -16.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.17 Total: 17.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.80 -8.21 -38.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166954250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.864 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds