Wall clock time and date at job start Tue Mar 31 2020 13:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00171 * 2 1 4 4 O 1.20824 * 119.99883 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00045 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.52034 * 34.50239 * 5 3 2 7 7 C 1.38861 * 120.00017 * 60.43285 * 6 5 3 8 8 C 1.39589 * 119.84079 * 352.45853 * 7 6 5 9 9 C 1.36325 * 120.16041 * 179.76098 * 8 7 6 10 10 C 1.40901 * 119.83147 * 0.52222 * 9 8 7 11 11 C 1.41141 * 120.15272 * 179.75907 * 10 9 8 12 12 H 1.08005 * 119.99965 * 148.65098 * 11 10 9 13 13 C 1.39866 * 120.00068 * 328.64860 * 11 10 9 14 14 N 1.30900 * 119.99830 * 163.16726 * 13 11 10 15 15 Si 1.86802 * 120.00052 * 343.16805 * 13 11 10 16 16 H 1.48493 * 109.47257 * 93.92523 * 15 13 11 17 17 H 1.48495 * 109.47219 * 213.92929 * 15 13 11 18 18 H 1.48508 * 109.46729 * 333.92722 * 15 13 11 19 19 C 1.40866 * 119.69224 * 359.73759 * 10 9 8 20 20 C 1.50701 * 120.08101 * 180.02562 * 19 10 9 21 21 C 1.36360 * 119.83689 * 359.97438 * 19 10 9 22 22 C 1.53116 * 109.52492 * 274.31024 * 5 3 2 23 23 C 1.53035 * 109.27846 * 182.44084 * 22 5 3 24 24 N 1.46849 * 109.52609 * 59.18232 * 23 22 5 25 25 C 1.46851 * 111.19382 * 298.25880 * 24 23 22 26 26 C 1.53038 * 109.52529 * 61.74115 * 25 24 23 27 27 H 1.08993 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46909 * 300.00016 * 1 2 3 29 29 H 1.08999 * 109.46907 * 59.99141 * 1 2 3 30 30 H 0.96997 * 120.00111 * 240.42011 * 6 5 3 31 31 H 1.07999 * 119.91932 * 0.03524 * 8 7 6 32 32 H 1.08001 * 120.08332 * 180.23868 * 9 8 7 33 33 H 0.97008 * 119.99718 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47475 * 269.97400 * 20 19 10 35 35 H 1.08998 * 109.47727 * 29.97924 * 20 19 10 36 36 H 1.09006 * 109.46859 * 149.97596 * 20 19 10 37 37 H 1.08001 * 119.91982 * 180.02562 * 21 19 10 38 38 H 1.08992 * 109.50553 * 302.38239 * 22 5 3 39 39 H 1.09001 * 109.50306 * 62.49921 * 22 5 3 40 40 H 1.09003 * 109.46296 * 299.16456 * 23 22 5 41 41 H 1.09005 * 109.45660 * 179.19525 * 23 22 5 42 42 H 1.00894 * 110.99587 * 62.34847 * 24 23 22 43 43 H 1.09004 * 109.45831 * 301.72292 * 25 24 23 44 44 H 1.08995 * 109.44991 * 181.75146 * 25 24 23 45 45 H 1.08995 * 109.50265 * 180.87762 * 26 25 24 46 46 H 1.08997 * 109.50156 * 60.75738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1151 0.1639 -0.7811 7 6 3.7945 0.0365 -2.1262 8 6 2.8293 0.8709 -2.6923 9 6 2.5130 0.7547 -4.0133 10 6 3.1553 -0.2181 -4.8048 11 6 2.8294 -0.3477 -6.1719 12 1 3.5802 -0.6711 -6.8777 13 6 1.5341 -0.0575 -6.6127 14 7 1.3061 0.1457 -7.8856 15 14 0.1296 0.0402 -5.3849 16 1 -0.0569 1.4499 -4.9573 17 1 -1.1184 -0.4537 -6.0202 18 1 0.4479 -0.7982 -4.2012 19 6 4.1244 -1.0604 -4.2254 20 6 4.8171 -2.1035 -5.0640 21 6 4.4349 -0.9289 -2.9041 22 6 4.0825 1.1936 1.4398 23 6 5.6063 1.3353 1.4389 24 7 5.9791 2.6224 0.8382 25 6 5.5353 2.7045 -0.5592 26 6 4.0094 2.6037 -0.6179 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 4.7024 -0.4825 -0.3592 31 1 2.3350 1.6134 -2.0834 32 1 1.7688 1.4036 -4.4509 33 1 0.4076 0.3466 -8.1913 34 1 4.2512 -3.0343 -5.0267 35 1 4.8798 -1.7574 -6.0957 36 1 5.8215 -2.2732 -4.6760 37 1 5.1780 -1.5736 -2.4586 38 1 3.6427 1.9974 2.0301 39 1 3.8067 0.2315 1.8716 40 1 6.0462 0.5233 0.8599 41 1 5.9756 1.2922 2.4636 42 1 5.6154 3.3926 1.3790 43 1 5.9756 1.8861 -1.1288 44 1 5.8531 3.6559 -0.9856 45 1 3.6814 2.6491 -1.6564 46 1 3.5684 3.4297 -0.0600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166954250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:31 Heat of formation + Delta-G solvation = -74.123651 kcal Electronic energy + Delta-G solvation = -28536.445427 eV Core-core repulsion = 24810.885553 eV Total energy + Delta-G solvation = -3725.559874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37043 -40.31127 -39.45729 -37.58417 -36.37127 -34.96539 -33.23044 -32.57079 -31.91437 -30.21810 -28.91900 -27.87757 -25.93902 -25.59091 -24.09702 -23.12848 -22.53387 -21.76104 -20.32317 -19.33806 -18.81739 -18.40405 -17.96650 -17.24158 -17.07403 -16.87839 -15.94256 -15.71721 -15.51319 -15.23625 -15.17817 -14.62774 -14.60628 -14.53929 -14.41066 -14.15613 -13.77217 -13.63168 -13.52653 -13.28806 -13.12929 -13.05571 -12.84827 -12.73992 -12.67035 -12.35671 -12.19417 -11.92806 -11.87596 -11.73299 -11.71722 -11.49571 -11.26626 -11.06205 -10.49156 -9.44648 -9.33143 -8.78227 -8.38802 -6.18377 0.79223 0.90600 1.00201 1.21005 1.32495 1.41229 1.67000 2.11467 2.52608 2.68118 3.34611 3.47900 3.50239 3.61694 3.69248 4.02964 4.12093 4.16232 4.17805 4.20262 4.30269 4.31356 4.48358 4.54985 4.58857 4.61158 4.76087 4.79694 4.86214 4.91661 4.96919 5.06037 5.09893 5.11847 5.18277 5.22524 5.28223 5.32129 5.43641 5.65251 5.81833 6.00578 6.02906 6.20546 6.41382 6.50689 6.51562 6.66031 6.85359 6.97071 7.11067 8.31579 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005217 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.625547 B = 5365.556295 C = 6267.157758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.453 3.547 4 O -0.545 6.545 5 C 0.207 3.793 6 N -0.717 5.717 7 C 0.134 3.866 8 C -0.168 4.168 9 C -0.206 4.206 10 C 0.033 3.967 11 C -0.474 4.474 12 H 0.065 0.935 13 C 0.048 3.952 14 N -0.868 5.868 15 Si 0.950 3.050 16 H -0.281 1.281 17 H -0.280 1.280 18 H -0.256 1.256 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.139 4.139 22 C -0.147 4.147 23 C 0.066 3.934 24 N -0.681 5.681 25 C 0.076 3.924 26 C -0.162 4.162 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.411 0.589 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.285 0.715 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.348 0.652 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -0.410 21.612 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.296 3.704 4 O -0.435 6.435 5 C 0.116 3.884 6 N -0.354 5.354 7 C 0.035 3.965 8 C -0.190 4.190 9 C -0.226 4.226 10 C 0.030 3.970 11 C -0.505 4.505 12 H 0.084 0.916 13 C -0.163 4.163 14 N -0.497 5.497 15 Si 0.777 3.223 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.180 1.180 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.160 4.160 22 C -0.186 4.186 23 C -0.064 4.064 24 N -0.310 5.310 25 C -0.054 4.054 26 C -0.202 4.202 27 H 0.145 0.855 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.249 0.751 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.156 0.844 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.167 0.833 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.986 -0.172 21.253 22.080 hybrid contribution -2.572 0.469 -0.394 2.643 sum 3.414 0.298 20.859 21.139 Atomic orbital electron populations 1.23480 0.76067 1.05379 1.01874 1.86580 1.23912 1.33096 1.82957 1.25244 0.93791 0.81162 0.70200 1.90626 1.67876 1.37395 1.47591 1.20035 0.83036 0.89631 0.95650 1.43760 1.55836 1.30031 1.05798 1.17237 0.96673 0.97702 0.84845 1.20097 1.01280 1.02569 0.95068 1.20591 1.05223 1.01474 0.95329 1.17626 0.94504 0.92032 0.92871 1.19281 0.96746 1.41577 0.92945 0.91650 1.26487 1.01839 0.91408 0.96539 1.69760 1.24171 1.38780 1.17029 0.85717 0.77899 0.78816 0.79870 1.20737 1.20708 1.17978 1.19787 1.00945 0.98516 0.94322 1.20479 0.99059 0.96245 0.98499 1.20117 1.02571 1.00423 0.92896 1.22538 1.00506 1.05296 0.90307 1.22110 0.89955 0.92435 1.01889 1.60648 1.62594 1.05213 1.02505 1.21823 0.89664 1.03002 0.90938 1.22705 1.00447 0.95070 1.01996 0.85492 0.90654 0.94173 0.75072 0.89068 0.90307 0.90483 0.92264 0.93673 0.90608 0.84442 0.89461 0.88390 0.90099 0.87327 0.83318 0.90946 0.89969 0.92270 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.35 -10.94 10.15 -51.45 -0.52 -11.46 16 3 C 0.45 14.40 4.04 71.24 0.29 14.69 16 4 O -0.54 -19.99 15.44 21.97 0.34 -19.65 16 5 C 0.21 5.22 0.63 2.94 0.00 5.22 16 6 N -0.72 -18.86 4.04 -302.02 -1.22 -20.08 16 7 C 0.13 4.85 6.17 38.67 0.24 5.09 16 8 C -0.17 -7.29 7.17 22.15 0.16 -7.14 16 9 C -0.21 -10.36 7.11 22.48 0.16 -10.20 16 10 C 0.03 1.68 5.08 -21.27 -0.11 1.57 16 11 C -0.47 -26.95 8.88 23.38 0.21 -26.74 16 12 H 0.07 3.92 6.56 -2.91 -0.02 3.90 16 13 C 0.05 2.73 5.41 85.23 0.46 3.19 16 14 N -0.87 -50.26 13.93 21.82 0.30 -49.95 16 15 Si 0.95 46.74 24.52 68.60 1.68 48.42 16 16 H -0.28 -13.82 6.67 99.48 0.66 -13.16 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.26 -12.73 6.90 99.48 0.69 -12.04 16 19 C -0.13 -5.80 5.90 -19.66 -0.12 -5.92 16 20 C -0.09 -3.24 9.61 71.24 0.68 -2.56 16 21 C -0.14 -5.02 9.47 22.15 0.21 -4.81 16 22 C -0.15 -2.36 4.89 30.64 0.15 -2.21 16 23 C 0.07 0.85 6.39 86.32 0.55 1.41 16 24 N -0.68 -10.98 6.87 -513.98 -3.53 -14.51 16 25 C 0.08 1.64 6.41 86.33 0.55 2.19 16 26 C -0.16 -4.30 4.15 30.65 0.13 -4.17 16 27 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 1.70 8.13 -2.38 -0.02 1.68 16 29 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.41 8.42 7.50 -92.71 -0.70 7.73 16 31 H 0.09 3.96 3.90 -2.91 -0.01 3.95 16 32 H 0.08 4.20 4.78 -2.91 -0.01 4.19 16 33 H 0.29 15.13 8.30 -92.70 -0.77 14.36 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.88 6.31 -2.39 -0.02 1.86 16 36 H 0.08 2.28 8.08 -2.38 -0.02 2.26 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.09 7.03 -2.39 -0.02 1.07 16 41 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.35 4.71 8.86 -89.70 -0.79 3.91 16 43 H 0.07 1.78 7.69 -2.38 -0.02 1.76 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.06 2.02 5.21 -2.39 -0.01 2.00 16 46 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 Total: -1.00 -68.85 352.68 1.29 -67.56 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.53 Total: 28.19 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.77 Total: -28.52 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -4.45 Total: -84.54 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.18 Total: -31.11 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.68 Total: 48.42 kcal Total: -68.85 1.29 -67.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166954250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.562 kcal (2) G-P(sol) polarization free energy of solvation -68.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds