Wall clock time and date at job start Tue Mar 31 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48502 * 109.46968 * 240.00386 * 3 2 1 5 5 H 1.48497 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00598 * 3 2 1 7 7 C 1.38812 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00059 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47387 * 185.10308 * 10 9 7 12 12 C 1.52993 * 115.56258 * 280.47594 * 11 10 9 13 13 C 1.53000 * 109.47288 * 320.02287 * 12 11 10 14 14 N 1.46501 * 109.47018 * 185.89672 * 13 12 11 15 15 C 1.34783 * 119.99641 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99737 * 179.97438 * 15 14 13 18 18 H 1.08998 * 115.55073 * 34.41499 * 17 15 14 19 19 C 1.52998 * 117.49626 * 248.73841 * 17 15 14 20 20 C 1.53005 * 117.49685 * 180.08159 * 17 15 14 21 21 H 1.09001 * 117.49676 * 359.97438 * 20 17 15 22 22 C 1.50693 * 117.50148 * 214.97734 * 20 17 15 23 23 C 1.34516 * 125.79249 * 119.71317 * 22 20 17 24 24 C 1.41374 * 106.84164 * 179.89389 * 23 22 20 25 25 C 1.34512 * 106.84531 * 0.37575 * 24 23 22 26 26 O 1.34306 * 125.78864 * 300.03303 * 22 20 17 27 27 C 1.53002 * 117.49747 * 134.78088 * 11 10 9 28 28 C 1.52999 * 59.99981 * 252.51505 * 27 11 10 29 29 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00098 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47222 * 65.10970 * 10 9 7 32 32 H 1.08996 * 109.47266 * 305.10520 * 10 9 7 33 33 H 1.08999 * 109.47381 * 80.02301 * 12 11 10 34 34 H 1.08999 * 109.47132 * 200.02559 * 12 11 10 35 35 H 1.09000 * 109.46971 * 305.89416 * 13 12 11 36 36 H 1.09000 * 109.47046 * 65.89268 * 13 12 11 37 37 H 0.96999 * 120.00444 * 359.97438 * 14 13 12 38 38 H 1.08995 * 117.49871 * 0.02562 * 19 17 15 39 39 H 1.09007 * 117.49446 * 144.99680 * 19 17 15 40 40 H 1.07999 * 126.57293 * 0.03180 * 23 22 20 41 41 H 1.08002 * 126.58105 * 180.16558 * 24 23 22 42 42 H 1.07998 * 125.79475 * 179.75350 * 25 24 23 43 43 H 1.08996 * 117.49795 * 0.02562 * 27 11 10 44 44 H 1.09000 * 117.49708 * 145.02254 * 27 11 10 45 45 H 1.08995 * 117.49754 * 252.51155 * 28 27 11 46 46 H 1.08999 * 117.49471 * 107.49284 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0685 -4.8168 -0.1297 12 6 0.3476 -5.2151 1.1596 13 6 1.3294 -5.1568 2.3317 14 7 0.6792 -5.6718 3.5393 15 6 1.3576 -5.7160 4.7031 16 8 2.5062 -5.3299 4.7505 17 6 0.6886 -6.2452 5.9455 18 1 -0.0222 -7.0562 5.7876 19 6 0.3838 -5.2463 7.0637 20 6 1.5109 -6.2677 7.2356 21 1 2.5359 -5.9002 7.1856 22 6 1.2757 -7.4091 8.1909 23 6 2.1969 -8.3054 8.5879 24 6 1.5495 -9.1904 9.4803 25 6 0.2693 -8.7871 9.5689 26 8 0.1092 -7.7078 8.7858 27 6 1.4107 -5.9310 -1.1209 28 6 0.2901 -4.9398 -1.4412 29 1 -0.4850 0.8400 0.0004 30 1 0.3554 -2.3881 0.0002 31 1 2.6149 -3.7556 0.9301 32 1 2.7507 -3.6756 -0.8429 33 1 -0.4774 -4.5266 1.3422 34 1 -0.0403 -6.2289 1.0607 35 1 2.2047 -5.7648 2.1030 36 1 1.6372 -4.1243 2.4968 37 1 -0.2396 -5.9802 3.5015 38 1 0.6668 -4.2065 6.9005 39 1 -0.5277 -5.4003 7.6414 40 1 3.2329 -8.3406 8.2848 41 1 1.9962 -10.0312 9.9901 42 1 -0.4994 -9.2525 10.1679 43 1 2.3409 -5.8378 -1.6814 44 1 1.1223 -6.9478 -0.8543 45 1 -0.7355 -5.3045 -1.3853 46 1 0.4829 -4.1944 -2.2127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167306295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:00 Heat of formation + Delta-G solvation = 15.562222 kcal Electronic energy + Delta-G solvation = -25505.957035 eV Core-core repulsion = 21784.286233 eV Total energy + Delta-G solvation = -3721.670802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.52428 -41.08249 -39.62287 -37.68455 -36.05298 -35.75189 -33.92415 -32.77917 -31.49858 -30.35522 -27.75426 -26.12355 -24.66539 -24.19241 -23.70980 -23.02610 -22.61537 -21.48874 -20.96451 -19.94847 -19.03605 -18.65924 -18.01331 -17.25227 -16.84368 -16.68409 -16.62346 -16.22423 -15.85005 -15.69188 -15.35529 -14.94631 -14.89043 -14.29997 -14.05320 -13.82927 -13.75147 -13.71601 -13.42369 -13.13911 -13.04190 -12.94028 -12.77771 -12.62079 -12.30718 -12.20177 -12.06911 -11.91328 -11.79662 -11.65139 -11.16312 -10.99594 -10.84122 -10.82084 -10.56254 -10.12585 -9.30554 -8.96734 -7.95147 -5.22302 0.67592 1.41489 1.44638 1.47678 1.53588 1.67551 1.93286 2.18285 2.53540 2.80287 2.91200 3.37118 3.42021 3.56102 3.71621 3.77581 3.87047 3.98324 4.02798 4.08639 4.10567 4.16605 4.23287 4.35772 4.49280 4.51614 4.60255 4.63121 4.82378 4.85464 4.87544 4.94367 4.99634 5.01730 5.04663 5.10229 5.17435 5.19685 5.24677 5.35192 5.36927 5.44275 5.47422 5.59118 6.19540 6.27313 6.51536 7.20197 7.34344 8.11214 8.36900 9.27864 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.002402 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.112409 B =11655.473218 C =12903.912145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.181 3.819 11 C -0.141 4.141 12 C -0.071 4.071 13 C 0.130 3.870 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.585 6.585 17 C -0.168 4.168 18 H 0.152 0.848 19 C -0.126 4.126 20 C -0.054 4.054 21 H 0.133 0.867 22 C 0.001 3.999 23 C -0.215 4.215 24 C -0.227 4.227 25 C -0.036 4.036 26 O -0.185 6.185 27 C -0.147 4.147 28 C -0.165 4.165 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.417 0.583 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.241 0.759 43 H 0.091 0.909 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -22.856 15.434 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.376 5.376 10 C 0.055 3.945 11 C -0.142 4.142 12 C -0.109 4.109 13 C 0.006 3.994 14 N -0.360 5.360 15 C 0.323 3.677 16 O -0.466 6.466 17 C -0.189 4.189 18 H 0.169 0.831 19 C -0.164 4.164 20 C -0.072 4.072 21 H 0.150 0.850 22 C -0.048 4.048 23 C -0.235 4.235 24 C -0.246 4.246 25 C -0.103 4.103 26 O -0.082 6.082 27 C -0.184 4.184 28 C -0.203 4.203 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.186 0.814 42 H 0.257 0.743 43 H 0.109 0.891 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.911 -22.312 15.385 27.258 hybrid contribution 0.196 1.129 -0.207 1.164 sum -2.714 -21.184 15.178 26.201 Atomic orbital electron populations 1.69793 1.06346 1.26034 1.59428 1.25494 0.96436 1.00808 1.03805 0.85272 0.77306 0.79520 0.78041 1.20419 1.21797 1.20859 1.19555 0.91265 0.85653 1.41301 0.91389 1.42415 1.05577 1.00553 1.89101 1.20375 0.92784 0.84172 0.97196 1.21454 1.02307 0.98611 0.91857 1.21101 0.96664 1.02668 0.90465 1.21229 0.96212 0.98072 0.83863 1.45816 1.17501 1.64413 1.08313 1.20060 0.85641 0.77251 0.84706 1.90704 1.19689 1.50048 1.86143 1.22339 1.04262 1.05016 0.87254 0.83061 1.23172 0.99943 0.95570 0.97688 1.20377 0.98948 0.95104 0.92793 0.84956 1.21282 0.84304 0.99187 1.00059 1.21855 1.01417 0.97502 1.02679 1.22163 0.94930 1.03792 1.03706 1.24834 0.99774 0.88291 0.97394 1.83967 1.34078 1.41370 1.48771 1.23174 0.99490 0.94992 1.00765 1.22882 0.97666 1.02210 0.97501 0.93998 0.79152 0.96384 0.96760 0.91844 0.88022 0.91873 0.94312 0.74568 0.87891 0.85137 0.83140 0.81396 0.74294 0.89054 0.86023 0.87222 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 47.56 29.55 68.60 2.03 49.58 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.73 -38.13 5.57 -343.45 -1.91 -40.04 16 10 C 0.18 7.55 5.82 86.38 0.50 8.05 16 11 C -0.14 -4.37 1.81 -52.18 -0.09 -4.46 16 12 C -0.07 -1.86 5.46 30.59 0.17 -1.69 16 13 C 0.13 3.87 4.62 86.38 0.40 4.26 16 14 N -0.71 -17.01 5.56 -463.05 -2.57 -19.59 16 15 C 0.54 14.71 7.61 87.66 0.67 15.38 16 16 O -0.59 -21.71 16.26 -3.01 -0.05 -21.76 16 17 C -0.17 -3.29 5.89 -11.54 -0.07 -3.36 16 18 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 19 C -0.13 -2.31 9.87 30.62 0.30 -2.00 16 20 C -0.05 -1.11 5.75 -11.52 -0.07 -1.18 16 21 H 0.13 3.13 7.67 -2.39 -0.02 3.11 16 22 C 0.00 0.03 6.80 24.83 0.17 0.20 16 23 C -0.22 -4.05 10.81 22.19 0.24 -3.81 16 24 C -0.23 -3.27 10.91 22.19 0.24 -3.03 16 25 C -0.04 -0.45 12.09 66.97 0.81 0.36 16 26 O -0.19 -3.27 10.36 -2.57 -0.03 -3.30 16 27 C -0.15 -3.54 9.82 30.59 0.30 -3.24 16 28 C -0.17 -4.75 9.94 30.59 0.30 -4.45 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.38 20.52 7.67 -92.71 -0.71 19.81 16 31 H 0.02 0.80 6.01 -2.39 -0.01 0.78 16 32 H 0.01 0.62 7.95 -2.39 -0.02 0.60 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.88 7.95 -2.39 -0.02 1.86 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.52 6.87 -2.39 -0.02 1.50 16 37 H 0.42 6.86 8.47 -92.71 -0.79 6.08 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.13 1.88 7.97 -2.38 -0.02 1.86 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.24 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.09 2.23 8.09 -2.39 -0.02 2.22 16 44 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 45 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -75.87 390.29 2.43 -73.44 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.50 Total: 37.33 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.18 Total: -16.21 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.20 Total: -119.09 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.08 Total: -25.06 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -75.87 2.43 -73.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167306295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.006 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds