Wall clock time and date at job start Tue Mar 31 2020 12:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38389 * 120.11448 * 2 1 4 4 C 1.37696 * 119.97623 * 179.97438 * 3 2 1 5 5 C 1.38920 * 120.78764 * 0.33667 * 4 3 2 6 6 C 1.39245 * 118.87515 * 359.50298 * 5 4 3 7 7 C 1.37973 * 120.24048 * 0.07198 * 6 5 4 8 8 C 1.50699 * 119.83053 * 180.28136 * 7 6 5 9 9 O 1.36136 * 111.22995 * 179.30573 * 5 4 3 10 10 C 1.43770 * 109.23088 * 19.09107 * 9 5 4 11 11 H 1.08998 * 110.75263 * 213.89235 * 10 9 5 12 12 C 1.50704 * 110.74888 * 90.72275 * 10 9 5 13 13 O 1.21278 * 119.99744 * 356.45963 * 12 10 9 14 14 N 1.34778 * 120.00190 * 176.45149 * 12 10 9 15 15 C 1.46495 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47157 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47268 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47241 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99852 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00437 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99942 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00308 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47131 * 59.99880 * 23 21 19 25 25 H 1.48502 * 109.47470 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47017 * 300.00567 * 23 21 19 27 27 C 1.51650 * 132.17799 * 180.92102 * 4 3 2 28 28 H 1.09001 * 109.46953 * 90.00161 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99759 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00389 * 1 2 3 31 31 H 1.08007 * 120.01651 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.87619 * 180.34508 * 6 5 4 33 33 H 1.09000 * 109.46985 * 270.23291 * 8 7 6 34 34 H 1.09007 * 109.47119 * 30.22883 * 8 7 6 35 35 H 1.08994 * 109.47744 * 150.22901 * 8 7 6 36 36 H 0.96996 * 119.99781 * 0.02562 * 14 12 10 37 37 H 1.09003 * 109.47302 * 300.00192 * 15 14 12 38 38 H 1.09001 * 109.47649 * 60.00039 * 15 14 12 39 39 H 1.08998 * 109.47125 * 299.99677 * 16 15 14 40 40 H 1.08998 * 109.47286 * 59.99851 * 16 15 14 41 41 H 1.09003 * 109.47167 * 299.99832 * 17 16 15 42 42 H 1.08998 * 109.47169 * 59.99681 * 17 16 15 43 43 H 0.97003 * 120.00055 * 0.02562 * 18 17 16 44 44 H 0.97004 * 120.00236 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.93924 * 282.29793 * 27 4 3 46 46 H 1.08997 * 110.93815 * 45.97797 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2865 -0.0013 -0.0059 6 6 3.5804 -1.2014 -0.0024 7 6 2.2007 -1.1958 0.0058 8 6 1.4458 -2.5000 0.0160 9 8 5.6295 0.2215 -0.0195 10 6 5.8911 1.5648 0.4212 11 1 6.7558 1.9796 -0.0967 12 6 6.0945 1.6069 1.9138 13 8 5.9623 0.5972 2.5725 14 7 6.4234 2.7666 2.5167 15 6 6.6216 2.8074 3.9676 16 6 6.9838 4.2317 4.3930 17 6 7.1914 4.2742 5.9083 18 7 7.5388 5.6379 6.3155 19 6 7.7719 5.9199 7.6351 20 1 7.7002 5.1370 8.3756 21 6 8.1006 7.2122 8.0211 22 7 8.1876 8.1664 7.1188 23 14 8.4193 7.5969 9.8210 24 1 9.5571 6.7766 10.3086 25 1 8.7480 9.0375 9.9687 26 1 7.2057 7.2823 10.6169 27 6 4.5993 2.3150 0.0187 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6635 2.1337 -0.0004 32 1 4.1147 -2.1401 -0.0017 33 1 1.2612 -2.8210 -1.0092 34 1 2.0354 -3.2571 0.5331 35 1 0.4948 -2.3655 0.5313 36 1 6.5288 3.5742 1.9899 37 1 5.7032 2.5014 4.4686 38 1 7.4291 2.1291 4.2433 39 1 7.9021 4.5381 3.8921 40 1 6.1760 4.9097 4.1175 41 1 6.2734 3.9676 6.4096 42 1 7.9994 3.5963 6.1834 43 1 7.6029 6.3412 5.6506 44 1 8.4168 9.0696 7.3886 45 1 4.7016 2.7647 -0.9688 46 1 4.3381 3.0676 0.7627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176643921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:17 Heat of formation + Delta-G solvation = -42.660530 kcal Electronic energy + Delta-G solvation = -25484.230886 eV Core-core repulsion = 21760.035355 eV Total energy + Delta-G solvation = -3724.195530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.77986 -39.51409 -38.20000 -36.04276 -34.46094 -33.60779 -32.42372 -32.08123 -31.20208 -29.53076 -27.38936 -27.03307 -25.26520 -23.72978 -22.54310 -22.36671 -21.28306 -20.96886 -20.28820 -18.06260 -17.38235 -16.97791 -16.87897 -15.91008 -15.64923 -15.45123 -15.20780 -14.68516 -14.49756 -14.33440 -14.28573 -13.91641 -13.43616 -13.35044 -13.28548 -13.09166 -13.04711 -12.82673 -12.57072 -12.45202 -12.31941 -11.96919 -11.69272 -11.61581 -11.36846 -11.04008 -10.97892 -10.93639 -10.80921 -10.64631 -10.14090 -9.88853 -9.70974 -9.16856 -8.98996 -8.89520 -8.20842 -6.95901 -5.79074 -3.08131 0.98245 1.10856 2.32829 2.68472 3.13782 3.40865 3.43566 3.47607 3.48884 4.01862 4.10074 4.40786 4.51480 4.57362 4.58387 4.72262 4.77128 4.90560 5.01739 5.05716 5.18148 5.20096 5.22103 5.26027 5.34137 5.39760 5.45313 5.54103 5.55331 5.57494 5.67616 5.85757 5.91947 6.00448 6.01456 6.12540 6.14793 6.27676 6.28375 6.34567 6.40105 6.75443 6.79646 6.90047 7.31412 7.68002 8.01912 8.39844 9.50943 10.07619 10.42386 11.43800 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.001957 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.411189 B =14306.084785 C =14659.223043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.177 4.177 5 C 0.112 3.888 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.117 4.117 9 O -0.275 6.275 10 C 0.063 3.937 11 H 0.142 0.858 12 C 0.494 3.506 13 O -0.520 6.520 14 N -0.722 5.722 15 C 0.123 3.877 16 C -0.137 4.137 17 C 0.156 3.844 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.097 4.097 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.104 0.896 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -16.547 -21.815 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.082 4.082 4 C -0.178 4.178 5 C 0.067 3.933 6 C -0.148 4.148 7 C -0.053 4.053 8 C -0.173 4.173 9 O -0.187 6.187 10 C 0.003 3.997 11 H 0.159 0.841 12 C 0.278 3.722 13 O -0.395 6.395 14 N -0.375 5.375 15 C -0.001 4.001 16 C -0.175 4.175 17 C 0.028 3.972 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.134 4.134 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.217 0.783 44 H 0.066 0.934 45 H 0.122 0.878 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.333 -17.463 -21.196 30.528 hybrid contribution 0.456 1.177 0.609 1.401 sum -12.877 -16.286 -20.587 29.238 Atomic orbital electron populations 1.20775 0.90809 1.02923 1.02198 1.19598 0.96104 0.92092 1.03922 1.20115 0.91535 0.97971 0.98598 1.20639 0.94706 0.94132 1.08301 1.19465 0.82898 0.94557 0.96394 1.20070 0.92759 0.95763 1.06206 1.19433 0.92255 0.95321 0.98285 1.20872 1.00162 0.93717 1.02544 1.86924 1.20455 1.31139 1.80194 1.23335 1.00978 0.82352 0.93004 0.84060 1.20806 0.77509 0.84003 0.89841 1.90752 1.49402 1.33676 1.65670 1.46001 1.71014 1.10883 1.09614 1.21398 1.01869 0.98300 0.78509 1.21945 1.02154 0.94464 0.98960 1.20519 0.97471 0.89056 0.90164 1.42321 1.84234 1.04631 1.06587 1.19201 1.39467 0.93891 0.84665 0.91140 1.24758 1.02599 0.95920 0.97784 1.69647 1.55252 1.01233 1.32198 0.86232 0.78094 0.77000 0.84654 1.21213 1.21656 1.21221 1.21745 0.90559 0.97040 1.04092 0.91310 0.91142 0.91629 0.85675 0.85394 0.90859 0.91311 0.90793 0.76415 0.91278 0.91174 0.91191 0.91239 0.96054 0.96023 0.78297 0.93446 0.87805 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.62 36.01 0.35 -0.35 16 2 C -0.12 -1.07 5.89 -104.56 -0.62 -1.69 16 3 C -0.06 -0.62 9.70 -39.72 -0.39 -1.00 16 4 C -0.18 -1.90 6.26 -104.10 -0.65 -2.56 16 5 C 0.11 1.40 6.83 -38.96 -0.27 1.13 16 6 C -0.13 -1.47 9.71 -39.30 -0.38 -1.85 16 7 C -0.05 -0.51 5.87 -104.72 -0.61 -1.12 16 8 C -0.12 -0.76 9.59 36.00 0.35 -0.42 16 9 O -0.27 -3.54 10.43 -39.21 -0.41 -3.95 16 10 C 0.06 0.62 4.10 -26.98 -0.11 0.51 16 11 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 12 C 0.49 6.40 7.05 -10.98 -0.08 6.32 16 13 O -0.52 -9.20 16.46 -13.48 -0.22 -9.42 16 14 N -0.72 -7.97 5.55 -60.30 -0.33 -8.31 16 15 C 0.12 1.65 5.67 -4.05 -0.02 1.63 16 16 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 17 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 18 N -0.73 -18.57 5.60 -59.91 -0.34 -18.90 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.10 -0.78 6.65 -26.52 -0.18 -0.96 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.38 5.93 -51.93 -0.31 0.08 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.40 5.94 -51.93 -0.31 0.10 16 36 H 0.40 3.17 8.47 -40.82 -0.35 2.82 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.71 7.92 -51.93 -0.41 0.30 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -35.74 381.88 -10.02 -45.76 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.15 Total: 6.05 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.03 Total: -6.96 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.05 Total: -54.67 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.63 Total: -13.37 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.74 -10.02 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176643921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.094 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds