Wall clock time and date at job start Tue Mar 31 2020 12:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38389 * 120.11448 * 2 1 4 4 C 1.37696 * 119.97623 * 179.97438 * 3 2 1 5 5 C 1.38920 * 120.78764 * 0.33667 * 4 3 2 6 6 C 1.39245 * 118.87515 * 359.50298 * 5 4 3 7 7 C 1.37973 * 120.24048 * 0.07198 * 6 5 4 8 8 C 1.50699 * 119.83053 * 180.28136 * 7 6 5 9 9 O 1.36136 * 111.22995 * 179.30573 * 5 4 3 10 10 C 1.43770 * 109.23088 * 19.09107 * 9 5 4 11 11 H 1.08998 * 110.75263 * 213.89235 * 10 9 5 12 12 C 1.50704 * 110.74888 * 90.72275 * 10 9 5 13 13 O 1.21278 * 119.99744 * 356.45963 * 12 10 9 14 14 N 1.34778 * 120.00190 * 176.45149 * 12 10 9 15 15 C 1.46495 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47157 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47268 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47241 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99852 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00437 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99942 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00308 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47131 * 59.99880 * 23 21 19 25 25 H 1.48502 * 109.47470 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47017 * 300.00567 * 23 21 19 27 27 C 1.51650 * 132.17799 * 180.92102 * 4 3 2 28 28 H 1.09001 * 109.46953 * 90.00161 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99759 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00389 * 1 2 3 31 31 H 1.08007 * 120.01651 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.87619 * 180.34508 * 6 5 4 33 33 H 1.09000 * 109.46985 * 270.23291 * 8 7 6 34 34 H 1.09007 * 109.47119 * 30.22883 * 8 7 6 35 35 H 1.08994 * 109.47744 * 150.22901 * 8 7 6 36 36 H 0.96996 * 119.99781 * 0.02562 * 14 12 10 37 37 H 1.09003 * 109.47302 * 300.00192 * 15 14 12 38 38 H 1.09001 * 109.47649 * 60.00039 * 15 14 12 39 39 H 1.08998 * 109.47125 * 299.99677 * 16 15 14 40 40 H 1.08998 * 109.47286 * 59.99851 * 16 15 14 41 41 H 1.09003 * 109.47167 * 299.99832 * 17 16 15 42 42 H 1.08998 * 109.47169 * 59.99681 * 17 16 15 43 43 H 0.97003 * 120.00055 * 0.02562 * 18 17 16 44 44 H 0.97004 * 120.00236 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.93924 * 282.29793 * 27 4 3 46 46 H 1.08997 * 110.93815 * 45.97797 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2865 -0.0013 -0.0059 6 6 3.5804 -1.2014 -0.0024 7 6 2.2007 -1.1958 0.0058 8 6 1.4458 -2.5000 0.0160 9 8 5.6295 0.2215 -0.0195 10 6 5.8911 1.5648 0.4212 11 1 6.7558 1.9796 -0.0967 12 6 6.0945 1.6069 1.9138 13 8 5.9623 0.5972 2.5725 14 7 6.4234 2.7666 2.5167 15 6 6.6216 2.8074 3.9676 16 6 6.9838 4.2317 4.3930 17 6 7.1914 4.2742 5.9083 18 7 7.5388 5.6379 6.3155 19 6 7.7719 5.9199 7.6351 20 1 7.7002 5.1370 8.3756 21 6 8.1006 7.2122 8.0211 22 7 8.1876 8.1664 7.1188 23 14 8.4193 7.5969 9.8210 24 1 9.5571 6.7766 10.3086 25 1 8.7480 9.0375 9.9687 26 1 7.2057 7.2823 10.6169 27 6 4.5993 2.3150 0.0187 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6635 2.1337 -0.0004 32 1 4.1147 -2.1401 -0.0017 33 1 1.2612 -2.8210 -1.0092 34 1 2.0354 -3.2571 0.5331 35 1 0.4948 -2.3655 0.5313 36 1 6.5288 3.5742 1.9899 37 1 5.7032 2.5014 4.4686 38 1 7.4291 2.1291 4.2433 39 1 7.9021 4.5381 3.8921 40 1 6.1760 4.9097 4.1175 41 1 6.2734 3.9676 6.4096 42 1 7.9994 3.5963 6.1834 43 1 7.6029 6.3412 5.6506 44 1 8.4168 9.0696 7.3886 45 1 4.7016 2.7647 -0.9688 46 1 4.3381 3.0676 0.7627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176643921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:16 Heat of formation + Delta-G solvation = -65.849942 kcal Electronic energy + Delta-G solvation = -25485.236454 eV Core-core repulsion = 21760.035355 eV Total energy + Delta-G solvation = -3725.201099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.57630 -40.46648 -38.99571 -37.50265 -35.98925 -34.39790 -33.79722 -32.98947 -32.18478 -31.01129 -28.19454 -27.72036 -26.75098 -24.88363 -23.90590 -23.12923 -22.62811 -21.83953 -21.21838 -19.31314 -18.73824 -18.13377 -17.73337 -16.99483 -16.81885 -16.45907 -16.19072 -16.05188 -15.56477 -15.34527 -15.27266 -14.99894 -14.80539 -14.61902 -14.17075 -14.07995 -13.84113 -13.56813 -13.52998 -13.32057 -13.11503 -12.89374 -12.80514 -12.68095 -12.63007 -12.46159 -12.18527 -12.14475 -12.07627 -12.06032 -11.80726 -11.72066 -10.94724 -10.87405 -10.23063 -9.72072 -9.02888 -8.95863 -7.97312 -5.26481 0.25478 0.34349 1.36870 1.47363 1.50231 1.56423 1.80915 2.29184 2.55554 2.67499 3.33586 3.36236 3.41742 3.57189 3.73612 3.86541 3.94171 4.04944 4.11383 4.14557 4.25791 4.27416 4.42843 4.45316 4.60060 4.66832 4.69297 4.70278 4.71127 4.74666 4.81341 4.85138 4.93101 5.01810 5.13596 5.22845 5.23414 5.29568 5.33345 5.33434 5.37418 5.47748 5.62440 5.71082 6.15057 6.25308 6.41939 7.08318 7.31979 8.06319 8.30668 9.25734 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.001957 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.411189 B =14306.084785 C =14659.223043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.122 4.122 3 C -0.075 4.075 4 C -0.189 4.189 5 C 0.076 3.924 6 C -0.153 4.153 7 C -0.063 4.063 8 C -0.115 4.115 9 O -0.299 6.299 10 C 0.063 3.937 11 H 0.181 0.819 12 C 0.492 3.508 13 O -0.576 6.576 14 N -0.705 5.705 15 C 0.133 3.867 16 C -0.116 4.116 17 C 0.151 3.849 18 N -0.746 5.746 19 C -0.252 4.252 20 H 0.073 0.927 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.278 1.278 27 C -0.088 4.088 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.420 0.580 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.377 0.623 44 H 0.253 0.747 45 H 0.135 0.865 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.544 -16.079 -22.632 31.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.190 4.190 5 C 0.032 3.968 6 C -0.172 4.172 7 C -0.063 4.063 8 C -0.171 4.171 9 O -0.212 6.212 10 C 0.004 3.996 11 H 0.198 0.802 12 C 0.278 3.722 13 O -0.455 6.455 14 N -0.359 5.359 15 C 0.009 3.991 16 C -0.154 4.154 17 C 0.024 3.976 18 N -0.389 5.389 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.125 4.125 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.258 0.742 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.209 0.791 44 H 0.061 0.939 45 H 0.153 0.847 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.436 -16.999 -22.038 31.354 hybrid contribution 0.757 0.953 0.847 1.483 sum -13.679 -16.046 -21.191 29.894 Atomic orbital electron populations 1.20838 0.88664 1.03736 1.03290 1.20038 0.97746 0.91825 1.02640 1.20482 0.91428 0.99128 0.98277 1.21030 0.95547 0.94506 1.07922 1.19818 0.83096 0.95712 0.98182 1.20346 0.93867 0.95752 1.07213 1.19803 0.91807 0.96959 0.97729 1.20931 1.00307 0.92261 1.03608 1.86881 1.21015 1.32839 1.80439 1.23630 1.03480 0.81832 0.90649 0.80203 1.21488 0.76176 0.83291 0.91234 1.90727 1.51944 1.35657 1.67150 1.45791 1.70036 1.11446 1.08670 1.21101 1.01028 0.96986 0.80003 1.21689 1.02924 0.95405 0.95429 1.20677 0.97001 0.86351 0.93571 1.42509 1.84269 1.06468 1.05636 1.19598 1.38541 0.94107 0.86117 0.90863 1.25584 1.03203 0.95934 1.01958 1.69791 1.56590 1.01326 1.34002 0.85198 0.78174 0.76473 0.79827 1.20455 1.21869 1.20421 1.21845 0.88461 0.96165 1.06041 0.89947 0.90226 0.90947 0.83582 0.85723 0.89469 0.91404 0.89420 0.74182 0.92289 0.92107 0.90355 0.90346 0.96188 0.96178 0.79116 0.93852 0.84675 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.62 71.24 0.69 -0.46 16 2 C -0.12 -2.11 5.89 -19.83 -0.12 -2.22 16 3 C -0.08 -1.35 9.70 22.18 0.22 -1.14 16 4 C -0.19 -3.90 6.26 -19.53 -0.12 -4.02 16 5 C 0.08 1.95 6.83 22.68 0.15 2.10 16 6 C -0.15 -3.63 9.71 22.45 0.22 -3.42 16 7 C -0.06 -1.19 5.87 -19.93 -0.12 -1.31 16 8 C -0.11 -1.41 9.59 71.24 0.68 -0.72 16 9 O -0.30 -7.77 10.43 -76.89 -0.80 -8.57 16 10 C 0.06 1.15 4.10 30.43 0.12 1.28 16 11 H 0.18 1.73 8.14 -2.39 -0.02 1.71 16 12 C 0.49 12.39 7.05 87.66 0.62 13.01 16 13 O -0.58 -20.88 16.46 15.18 0.25 -20.63 16 14 N -0.71 -14.43 5.55 -463.07 -2.57 -17.00 16 15 C 0.13 3.46 5.67 86.38 0.49 3.95 16 16 C -0.12 -3.29 5.44 30.59 0.17 -3.12 16 17 C 0.15 5.90 6.26 86.38 0.54 6.44 16 18 N -0.75 -37.57 5.60 -343.45 -1.92 -39.49 16 19 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 23 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 C -0.09 -1.22 6.65 30.73 0.20 -1.02 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.69 5.93 -2.39 -0.01 0.67 16 30 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 31 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 35 H 0.09 0.81 5.94 -2.39 -0.01 0.80 16 36 H 0.42 5.45 8.47 -92.71 -0.79 4.66 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.38 19.71 7.67 -92.71 -0.71 19.00 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.11 1.26 7.92 -2.39 -0.02 1.24 16 Total: -1.00 -78.73 381.88 1.82 -76.91 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -0.50 Total: 26.68 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.05 Total: -7.76 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -4.21 Total: -114.65 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.55 Total: -29.21 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.73 1.82 -76.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176643921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.063 kcal (2) G-P(sol) polarization free energy of solvation -78.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds