Wall clock time and date at job start Tue Mar 31 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47310 * 270.00656 * 3 2 1 5 5 H 1.48504 * 109.46584 * 30.00291 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00232 * 3 2 1 7 7 C 1.37877 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99942 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00028 * 273.45566 * 10 9 7 12 12 C 1.50706 * 109.47235 * 270.00358 * 11 10 9 13 13 C 1.38672 * 120.41637 * 269.72315 * 12 11 10 14 14 C 1.38626 * 118.42124 * 179.78166 * 13 12 11 15 15 C 1.38231 * 119.15615 * 0.46819 * 14 13 12 16 16 N 1.31857 * 120.76633 * 359.77089 * 15 14 13 17 17 C 1.31884 * 121.72512 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00334 * 93.45978 * 10 9 7 19 19 O 1.21279 * 120.00431 * 184.99979 * 18 10 9 20 20 C 1.50704 * 119.99605 * 4.99822 * 18 10 9 21 21 H 1.08994 * 109.47044 * 32.44567 * 20 18 10 22 22 C 1.53004 * 109.46969 * 272.44472 * 20 18 10 23 23 C 1.53000 * 109.46627 * 180.02562 * 22 20 18 24 24 C 1.53002 * 109.47201 * 60.00140 * 23 22 20 25 25 C 1.52991 * 109.47173 * 299.99951 * 24 23 22 26 26 C 1.52994 * 109.47471 * 60.00120 * 25 24 23 27 27 H 1.09000 * 109.47325 * 180.02562 * 26 25 24 28 28 O 1.42900 * 109.47470 * 59.99587 * 26 25 24 29 29 H 0.96994 * 119.99797 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46604 * 60.00328 * 9 7 2 31 31 H 1.08999 * 109.46978 * 300.00412 * 9 7 2 32 32 H 1.08999 * 109.47205 * 29.99906 * 11 10 9 33 33 H 1.08998 * 109.47093 * 150.00494 * 11 10 9 34 34 H 1.07999 * 120.79239 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.42579 * 180.26539 * 14 13 12 36 36 H 1.08002 * 119.61529 * 179.74862 * 15 14 13 37 37 H 1.07991 * 119.61627 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47314 * 299.99929 * 22 20 18 39 39 H 1.08997 * 109.47161 * 60.00141 * 22 20 18 40 40 H 1.09000 * 109.46872 * 179.97438 * 23 22 20 41 41 H 1.08998 * 109.47630 * 300.00169 * 23 22 20 42 42 H 1.08996 * 109.47317 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.46648 * 60.00093 * 24 23 22 44 44 H 1.08998 * 109.47427 * 299.99442 * 25 24 23 45 45 H 1.09003 * 109.47536 * 179.97438 * 25 24 23 46 46 H 0.96699 * 113.99403 * 60.00854 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.1724 -3.2922 1.2637 12 6 5.5688 -3.0654 1.7833 13 6 6.5971 -3.9270 1.4323 14 6 7.8664 -3.6767 1.9302 15 6 8.0614 -2.5900 2.7619 16 7 7.0587 -1.7945 3.0786 17 6 5.8392 -1.9997 2.6203 18 6 4.2905 -3.1864 -1.1678 19 8 4.6075 -4.3569 -1.1762 20 6 4.2214 -2.4151 -2.4606 21 1 4.4953 -1.3759 -2.2788 22 6 2.7971 -2.4774 -3.0162 23 6 2.7272 -1.6949 -4.3291 24 6 3.6968 -2.3089 -5.3410 25 6 5.1209 -2.2466 -4.7854 26 6 5.1909 -3.0291 -3.4726 27 1 6.2054 -2.9843 -3.0766 28 8 4.8315 -4.3916 -3.7104 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6799 -0.8911 32 1 3.4496 -2.9235 1.9915 33 1 4.0137 -4.3584 1.1019 34 1 6.4143 -4.7706 0.7833 35 1 8.6918 -4.3244 1.6741 36 1 9.0465 -2.3905 3.1573 37 1 5.0431 -1.3263 2.9013 38 1 2.5232 -3.5166 -3.1980 39 1 2.1064 -2.0405 -2.2951 40 1 1.7127 -1.7397 -4.7251 41 1 3.0013 -0.6557 -4.1477 42 1 3.6467 -1.7517 -6.2764 43 1 3.4226 -3.3482 -5.5224 44 1 5.3951 -1.2074 -4.6041 45 1 5.8116 -2.6844 -5.5061 46 1 5.4049 -4.8448 -4.3435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181085992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:33 Heat of formation + Delta-G solvation = -60.342906 kcal Electronic energy + Delta-G solvation = -28216.204843 eV Core-core repulsion = 24491.242547 eV Total energy + Delta-G solvation = -3724.962296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25837 -39.64237 -37.78301 -35.28142 -34.63940 -33.08171 -32.20914 -31.57155 -30.51201 -29.49691 -28.12877 -26.14075 -23.42542 -23.17879 -22.48888 -22.24040 -21.57190 -19.67971 -18.23891 -17.16763 -16.83486 -16.65129 -16.45157 -15.84874 -15.80033 -15.18645 -14.91539 -14.38161 -14.27356 -14.05198 -13.57208 -13.55416 -13.16452 -12.94297 -12.82098 -12.51647 -12.48010 -12.20546 -12.06304 -11.85136 -11.71695 -11.40233 -11.25697 -11.04954 -10.87668 -10.67110 -10.56994 -10.33124 -10.22992 -9.76988 -9.68764 -9.61918 -9.50168 -9.31075 -9.03985 -8.75524 -8.62781 -7.78829 -6.24364 -4.25213 1.22995 1.45016 3.14704 3.23570 3.25802 3.35632 3.70659 4.13708 4.23948 4.53951 4.59519 4.89767 4.94080 4.98219 5.05720 5.10540 5.11602 5.18620 5.24642 5.41831 5.45130 5.54088 5.63231 5.65913 5.76460 5.80013 5.83647 5.93123 6.01634 6.09814 6.18158 6.19551 6.28908 6.38111 6.40191 6.42030 6.53169 6.55896 6.64321 6.84149 6.86295 7.06938 7.28737 7.41408 7.98446 8.09892 8.11717 8.39225 8.80924 8.96817 9.35075 10.87782 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.006622 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.110243 B = 4227.585731 C = 6453.390106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.207 3.793 10 N -0.590 5.590 11 C 0.160 3.840 12 C -0.143 4.143 13 C -0.057 4.057 14 C -0.180 4.180 15 C 0.089 3.911 16 N -0.490 5.490 17 C 0.111 3.889 18 C 0.525 3.475 19 O -0.545 6.545 20 C -0.092 4.092 21 H 0.097 0.903 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.151 4.151 26 C 0.125 3.875 27 H 0.045 0.955 28 O -0.535 6.535 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 -4.081 -4.476 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.690 3.310 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.321 5.321 11 C 0.036 3.964 12 C -0.147 4.147 13 C -0.084 4.084 14 C -0.200 4.200 15 C -0.069 4.069 16 N -0.198 5.198 17 C -0.046 4.046 18 C 0.313 3.687 19 O -0.422 6.422 20 C -0.113 4.113 21 H 0.115 0.885 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.189 4.189 26 C 0.065 3.935 27 H 0.063 0.937 28 O -0.338 6.338 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.362 -3.694 -3.480 13.363 hybrid contribution 0.687 0.377 -0.974 1.250 sum 13.049 -3.316 -4.454 14.181 Atomic orbital electron populations 1.69880 1.06158 1.27186 1.49241 1.24834 0.94647 0.98675 0.94249 0.87035 0.80643 0.84301 0.78984 1.19834 1.20846 1.18795 1.21318 0.88845 0.94982 1.52368 0.90116 1.19870 0.95976 0.78112 0.97439 1.47943 1.64100 1.15844 1.04212 1.20117 0.90904 0.98688 0.86686 1.21493 0.98278 0.96473 0.98425 1.21675 0.92047 0.98507 0.96123 1.22112 0.97950 0.99803 1.00134 1.22693 0.97919 0.91227 0.95020 1.67698 1.00294 1.28763 1.23077 1.22797 0.93924 0.94902 0.92982 1.20352 0.76284 0.87176 0.84924 1.90609 1.48816 1.15921 1.86895 1.21338 0.98388 0.99492 0.92095 0.88536 1.21519 0.94535 1.01413 0.97415 1.21490 0.99030 0.99336 0.95357 1.21463 0.94380 1.01509 0.97840 1.22260 0.97990 1.01125 0.97502 1.21474 0.96151 0.82537 0.93351 0.93686 1.86768 1.57641 1.23263 1.66117 0.92341 0.95169 0.95121 0.88892 0.89520 0.84457 0.85238 0.83280 0.82610 0.91476 0.87871 0.91825 0.92211 0.92715 0.91456 0.91299 0.92048 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 13.96 55.43 0.77 -24.12 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.86 19.29 27.47 -169.99 -4.67 14.63 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 7 C -0.54 -13.38 8.05 -34.44 -0.28 -13.65 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.21 4.39 4.05 -5.19 -0.02 4.37 16 10 N -0.59 -11.61 2.44 -176.42 -0.43 -12.04 16 11 C 0.16 2.81 5.61 -5.19 -0.03 2.78 16 12 C -0.14 -2.30 5.48 -104.48 -0.57 -2.87 16 13 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 14 C -0.18 -2.28 10.11 -39.44 -0.40 -2.68 16 15 C 0.09 1.16 11.18 -17.54 -0.20 0.97 16 16 N -0.49 -7.71 10.36 -13.25 -0.14 -7.85 16 17 C 0.11 1.78 10.86 -17.55 -0.19 1.59 16 18 C 0.52 10.41 6.74 -10.99 -0.07 10.34 16 19 O -0.54 -11.64 14.54 -15.65 -0.23 -11.87 16 20 C -0.09 -1.62 1.64 -91.76 -0.15 -1.77 16 21 H 0.10 1.68 6.06 -51.93 -0.31 1.36 16 22 C -0.11 -2.03 5.02 -26.73 -0.13 -2.17 16 23 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 24 C -0.11 -1.46 5.78 -26.73 -0.15 -1.62 16 25 C -0.15 -1.83 5.64 -26.74 -0.15 -1.98 16 26 C 0.12 1.85 3.03 -26.73 -0.08 1.77 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 O -0.54 -8.29 10.38 -56.44 -0.59 -8.87 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 31 H 0.03 0.64 5.07 -51.93 -0.26 0.38 16 32 H 0.09 1.60 8.02 -51.93 -0.42 1.19 16 33 H 0.09 1.54 7.31 -51.93 -0.38 1.16 16 34 H 0.14 2.06 7.96 -52.49 -0.42 1.64 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 38 H 0.07 1.30 7.68 -51.93 -0.40 0.91 16 39 H 0.10 2.22 6.00 -51.93 -0.31 1.91 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.89 7.68 -51.92 -0.40 0.49 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.36 3.93 9.08 45.56 0.41 4.35 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -30.36 365.78 -9.09 -39.45 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.25 Total: 11.26 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.07 Total: -6.09 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.21 Total: -44.01 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.81 Total: -20.74 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.36 -9.09 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181085992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.894 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds