Wall clock time and date at job start Tue Mar 31 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47310 * 270.00656 * 3 2 1 5 5 H 1.48504 * 109.46584 * 30.00291 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00232 * 3 2 1 7 7 C 1.37877 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99942 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00028 * 273.45566 * 10 9 7 12 12 C 1.50706 * 109.47235 * 270.00358 * 11 10 9 13 13 C 1.38672 * 120.41637 * 269.72315 * 12 11 10 14 14 C 1.38626 * 118.42124 * 179.78166 * 13 12 11 15 15 C 1.38231 * 119.15615 * 0.46819 * 14 13 12 16 16 N 1.31857 * 120.76633 * 359.77089 * 15 14 13 17 17 C 1.31884 * 121.72512 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00334 * 93.45978 * 10 9 7 19 19 O 1.21279 * 120.00431 * 184.99979 * 18 10 9 20 20 C 1.50704 * 119.99605 * 4.99822 * 18 10 9 21 21 H 1.08994 * 109.47044 * 32.44567 * 20 18 10 22 22 C 1.53004 * 109.46969 * 272.44472 * 20 18 10 23 23 C 1.53000 * 109.46627 * 180.02562 * 22 20 18 24 24 C 1.53002 * 109.47201 * 60.00140 * 23 22 20 25 25 C 1.52991 * 109.47173 * 299.99951 * 24 23 22 26 26 C 1.52994 * 109.47471 * 60.00120 * 25 24 23 27 27 H 1.09000 * 109.47325 * 180.02562 * 26 25 24 28 28 O 1.42900 * 109.47470 * 59.99587 * 26 25 24 29 29 H 0.96994 * 119.99797 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46604 * 60.00328 * 9 7 2 31 31 H 1.08999 * 109.46978 * 300.00412 * 9 7 2 32 32 H 1.08999 * 109.47205 * 29.99906 * 11 10 9 33 33 H 1.08998 * 109.47093 * 150.00494 * 11 10 9 34 34 H 1.07999 * 120.79239 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.42579 * 180.26539 * 14 13 12 36 36 H 1.08002 * 119.61529 * 179.74862 * 15 14 13 37 37 H 1.07991 * 119.61627 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47314 * 299.99929 * 22 20 18 39 39 H 1.08997 * 109.47161 * 60.00141 * 22 20 18 40 40 H 1.09000 * 109.46872 * 179.97438 * 23 22 20 41 41 H 1.08998 * 109.47630 * 300.00169 * 23 22 20 42 42 H 1.08996 * 109.47317 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.46648 * 60.00093 * 24 23 22 44 44 H 1.08998 * 109.47427 * 299.99442 * 25 24 23 45 45 H 1.09003 * 109.47536 * 179.97438 * 25 24 23 46 46 H 0.96699 * 113.99403 * 60.00854 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.1724 -3.2922 1.2637 12 6 5.5688 -3.0654 1.7833 13 6 6.5971 -3.9270 1.4323 14 6 7.8664 -3.6767 1.9302 15 6 8.0614 -2.5900 2.7619 16 7 7.0587 -1.7945 3.0786 17 6 5.8392 -1.9997 2.6203 18 6 4.2905 -3.1864 -1.1678 19 8 4.6075 -4.3569 -1.1762 20 6 4.2214 -2.4151 -2.4606 21 1 4.4953 -1.3759 -2.2788 22 6 2.7971 -2.4774 -3.0162 23 6 2.7272 -1.6949 -4.3291 24 6 3.6968 -2.3089 -5.3410 25 6 5.1209 -2.2466 -4.7854 26 6 5.1909 -3.0291 -3.4726 27 1 6.2054 -2.9843 -3.0766 28 8 4.8315 -4.3916 -3.7104 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6799 -0.8911 32 1 3.4496 -2.9235 1.9915 33 1 4.0137 -4.3584 1.1019 34 1 6.4143 -4.7706 0.7833 35 1 8.6918 -4.3244 1.6741 36 1 9.0465 -2.3905 3.1573 37 1 5.0431 -1.3263 2.9013 38 1 2.5232 -3.5166 -3.1980 39 1 2.1064 -2.0405 -2.2951 40 1 1.7127 -1.7397 -4.7251 41 1 3.0013 -0.6557 -4.1477 42 1 3.6467 -1.7517 -6.2764 43 1 3.4226 -3.3482 -5.5224 44 1 5.3951 -1.2074 -4.6041 45 1 5.8116 -2.6844 -5.5061 46 1 5.4049 -4.8448 -4.3435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181085992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:33 Heat of formation + Delta-G solvation = -78.938243 kcal Electronic energy + Delta-G solvation = -28217.011197 eV Core-core repulsion = 24491.242547 eV Total energy + Delta-G solvation = -3725.768650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60507 -40.87214 -39.10604 -36.89439 -35.86149 -34.78158 -33.71476 -32.76223 -31.75220 -30.69675 -29.91534 -27.53294 -24.78607 -24.44954 -24.07035 -23.47847 -22.80084 -20.91143 -19.77948 -19.03532 -18.15076 -17.93099 -17.67726 -17.29416 -17.06680 -16.54749 -16.26702 -15.96200 -15.44981 -15.41807 -14.95376 -14.71744 -14.66739 -14.37626 -14.14911 -13.95970 -13.73829 -13.67272 -13.39042 -13.30508 -13.08727 -12.76222 -12.65092 -12.60636 -12.36069 -12.13061 -11.97221 -11.87255 -11.65161 -11.44506 -11.04936 -10.87519 -10.73021 -10.68658 -10.47812 -10.32931 -9.93458 -9.42439 -8.27337 -6.32467 0.10401 0.30856 1.38046 1.41541 1.49207 1.78291 2.28507 2.34580 2.93163 3.05882 3.41195 3.51649 3.61259 3.79314 3.85280 3.88851 3.98050 4.06890 4.08057 4.18705 4.25894 4.27922 4.46429 4.48847 4.52416 4.60638 4.65863 4.71793 4.72716 4.80410 4.86615 4.95748 4.97400 5.08189 5.18001 5.21818 5.25466 5.32043 5.36723 5.45182 5.51336 5.57616 5.67754 5.75762 6.20804 6.62488 6.72525 6.98912 7.08203 7.28249 7.41014 8.88630 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.006622 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.110243 B = 4227.585731 C = 6453.390106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.927 3.073 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.527 4.527 8 H 0.032 0.968 9 C 0.219 3.781 10 N -0.595 5.595 11 C 0.161 3.839 12 C -0.154 4.154 13 C -0.065 4.065 14 C -0.167 4.167 15 C 0.091 3.909 16 N -0.508 5.508 17 C 0.100 3.900 18 C 0.517 3.483 19 O -0.563 6.563 20 C -0.094 4.094 21 H 0.101 0.899 22 C -0.102 4.102 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.143 4.143 26 C 0.128 3.872 27 H 0.051 0.949 28 O -0.559 6.559 29 H 0.267 0.733 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.153 0.847 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.494 -3.089 -5.643 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.750 3.250 4 H -0.184 1.184 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.565 4.565 8 H 0.050 0.950 9 C 0.097 3.903 10 N -0.325 5.325 11 C 0.038 3.962 12 C -0.157 4.157 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.066 4.066 16 N -0.217 5.217 17 C -0.057 4.057 18 C 0.306 3.694 19 O -0.442 6.442 20 C -0.115 4.115 21 H 0.119 0.881 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.181 4.181 26 C 0.068 3.932 27 H 0.069 0.931 28 O -0.365 6.365 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.184 0.816 36 H 0.204 0.796 37 H 0.170 0.830 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 16.172 -2.724 -4.651 17.046 hybrid contribution -0.507 -0.103 -0.558 0.761 sum 15.664 -2.827 -5.209 16.748 Atomic orbital electron populations 1.70038 1.08203 1.28161 1.51404 1.25633 0.95274 1.02477 0.93867 0.86014 0.79920 0.79247 0.79793 1.18393 1.21251 1.16581 1.21356 0.90812 0.93068 1.51303 0.94982 1.19648 0.93218 0.79300 0.98166 1.48005 1.63905 1.15442 1.05160 1.20090 0.92471 0.97789 0.85897 1.21233 0.97354 0.97571 0.99523 1.21730 0.92911 0.98158 0.96407 1.22457 0.97767 0.99738 0.98622 1.23351 0.98688 0.90420 0.94129 1.67733 1.00507 1.29837 1.23630 1.22741 0.94450 0.95012 0.93452 1.20864 0.75708 0.87218 0.85619 1.90583 1.49752 1.16691 1.87215 1.21416 0.98604 0.99722 0.91796 0.88111 1.21325 0.94265 1.00190 0.98231 1.21493 1.00088 0.99134 0.94384 1.21424 0.94021 1.01269 0.97869 1.22230 0.98040 1.01433 0.96361 1.21451 0.95062 0.82645 0.94013 0.93105 1.86719 1.58765 1.23876 1.67179 0.92370 0.94301 0.93821 0.89570 0.90496 0.85112 0.81627 0.79576 0.82976 0.93546 0.92069 0.92070 0.91885 0.90190 0.91988 0.90317 0.88912 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 13.96 21.45 0.30 -54.64 16 2 C 0.03 1.43 5.47 84.65 0.46 1.89 16 3 Si 0.93 39.57 27.47 68.60 1.88 41.45 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 7 C -0.53 -27.48 8.05 25.60 0.21 -27.27 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.22 9.36 4.05 85.64 0.35 9.70 16 10 N -0.59 -24.09 2.44 -830.47 -2.03 -26.12 16 11 C 0.16 5.91 5.61 85.63 0.48 6.39 16 12 C -0.15 -4.92 5.48 -19.77 -0.11 -5.03 16 13 C -0.07 -1.86 9.86 22.47 0.22 -1.64 16 14 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 15 C 0.09 2.09 11.18 84.69 0.95 3.04 16 16 N -0.51 -15.00 10.36 -195.84 -2.03 -17.03 16 17 C 0.10 3.14 10.86 84.67 0.92 4.06 16 18 C 0.52 20.93 6.74 87.66 0.59 21.52 16 19 O -0.56 -24.57 14.54 17.25 0.25 -24.32 16 20 C -0.09 -3.30 1.64 -11.53 -0.02 -3.32 16 21 H 0.10 3.39 6.06 -2.39 -0.01 3.37 16 22 C -0.10 -3.85 5.02 30.60 0.15 -3.70 16 23 C -0.11 -3.39 5.92 30.59 0.18 -3.21 16 24 C -0.11 -2.49 5.78 30.59 0.18 -2.31 16 25 C -0.14 -2.96 5.64 30.59 0.17 -2.79 16 26 C 0.13 3.55 3.03 30.60 0.09 3.64 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 O -0.56 -16.64 10.38 -128.70 -1.34 -17.98 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.04 1.62 7.16 -2.39 -0.02 1.60 16 31 H 0.04 1.78 5.07 -2.39 -0.01 1.77 16 32 H 0.09 3.18 8.02 -2.39 -0.02 3.16 16 33 H 0.08 2.92 7.31 -2.39 -0.02 2.90 16 34 H 0.13 3.87 7.96 -2.91 -0.02 3.85 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.15 4.72 8.06 -2.92 -0.02 4.69 16 38 H 0.05 1.89 7.68 -2.39 -0.02 1.88 16 39 H 0.06 2.80 6.00 -2.39 -0.01 2.79 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.51 7.68 -2.38 -0.02 1.49 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.38 7.50 9.08 -74.06 -0.67 6.83 16 Total: -1.00 -69.03 365.78 2.35 -66.68 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.26 Total: 34.42 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.05 Total: -2.47 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -3.76 Total: -97.79 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.09 Total: -42.30 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.88 Total: 41.45 kcal Total: -69.03 2.35 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181085992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.256 kcal (2) G-P(sol) polarization free energy of solvation -69.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds