Wall clock time and date at job start Tue Mar 31 2020 11:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99895 * 2 1 4 4 H 1.48506 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47358 * 299.99686 * 3 2 1 6 6 H 1.48496 * 109.47556 * 60.00172 * 3 2 1 7 7 C 1.37881 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99671 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99922 * 95.39499 * 10 9 7 12 12 C 1.50702 * 109.47129 * 89.99902 * 11 10 9 13 13 C 1.38664 * 120.41902 * 89.99798 * 12 11 10 14 14 C 1.38633 * 118.42233 * 180.02562 * 13 12 11 15 15 C 1.38218 * 119.16162 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76616 * 359.97438 * 15 14 13 17 17 C 1.31887 * 121.72315 * 359.97438 * 16 15 14 18 18 C 1.34774 * 120.00104 * 275.39467 * 10 9 7 19 19 O 1.21278 * 120.00185 * 184.93678 * 18 10 9 20 20 C 1.50709 * 119.99834 * 4.93745 * 18 10 9 21 21 H 1.09001 * 109.46703 * 341.80979 * 20 18 10 22 22 C 1.52997 * 109.46905 * 101.80997 * 20 18 10 23 23 C 1.52996 * 109.47097 * 179.97438 * 22 20 18 24 24 C 1.53000 * 109.47715 * 300.00731 * 23 22 20 25 25 C 1.53000 * 109.46979 * 59.99207 * 24 23 22 26 26 C 1.52997 * 109.47686 * 300.00356 * 25 24 23 27 27 H 1.09002 * 109.47773 * 179.97438 * 26 25 24 28 28 O 1.42901 * 109.47047 * 300.00483 * 26 25 24 29 29 H 0.96997 * 120.00170 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47543 * 60.00052 * 9 7 2 31 31 H 1.09001 * 109.47068 * 299.99497 * 9 7 2 32 32 H 1.08998 * 109.47495 * 329.99906 * 11 10 9 33 33 H 1.09003 * 109.47522 * 209.99668 * 11 10 9 34 34 H 1.08000 * 120.79298 * 359.75438 * 13 12 11 35 35 H 1.08007 * 120.41988 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.61950 * 179.97438 * 15 14 13 37 37 H 1.07993 * 119.61887 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47289 * 299.99993 * 22 20 18 39 39 H 1.09009 * 109.46959 * 60.00091 * 22 20 18 40 40 H 1.08997 * 109.47509 * 179.97438 * 23 22 20 41 41 H 1.09009 * 109.46754 * 60.00441 * 23 22 20 42 42 H 1.09002 * 109.46552 * 299.99991 * 24 23 22 43 43 H 1.08998 * 109.47587 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47186 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46838 * 60.00960 * 25 24 23 46 46 H 0.96701 * 113.99550 * 299.99374 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5884 -4.2469 1.2636 12 6 1.6453 -5.3836 1.5631 13 6 1.9216 -6.6638 1.1074 14 6 1.0255 -7.6784 1.4064 15 6 -0.1059 -7.3822 2.1431 16 7 -0.3366 -6.1528 2.5602 17 6 0.4942 -5.1634 2.2954 18 6 2.7244 -4.0536 -1.1615 19 8 3.4420 -5.0312 -1.1719 20 6 2.4155 -3.3317 -2.4479 21 1 1.5330 -2.7068 -2.3109 22 6 3.6063 -2.4543 -2.8388 23 6 3.2930 -1.7219 -4.1451 24 6 3.0275 -2.7442 -5.2521 25 6 1.8368 -3.6217 -4.8610 26 6 2.1500 -4.3541 -3.5548 27 1 1.3015 -4.9789 -3.2759 28 8 3.3071 -5.1735 -3.7338 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.5401 -3.5132 2.0682 33 1 3.6054 -4.6305 1.1822 34 1 2.8116 -6.8648 0.5295 35 1 1.2086 -8.6873 1.0672 36 1 -0.8092 -8.1669 2.3799 37 1 0.2720 -4.1693 2.6542 38 1 3.7956 -1.7262 -2.0501 39 1 4.4888 -3.0794 -2.9758 40 1 4.1411 -1.0964 -4.4235 41 1 2.4104 -1.0969 -4.0085 42 1 3.9101 -3.3693 -5.3886 43 1 2.8039 -2.2225 -6.1826 44 1 1.6479 -4.3503 -5.6494 45 1 0.9542 -2.9967 -4.7245 46 1 3.2100 -5.8460 -4.4218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181086000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:43 Heat of formation + Delta-G solvation = -65.513368 kcal Electronic energy + Delta-G solvation = -28163.730649 eV Core-core repulsion = 24438.544145 eV Total energy + Delta-G solvation = -3725.186504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.14187 -39.53482 -37.70420 -35.11884 -34.62481 -33.10453 -32.10684 -31.43170 -30.43549 -29.45904 -27.53155 -25.96506 -23.42912 -23.15090 -22.74243 -22.20914 -21.54175 -19.59342 -18.18511 -16.90644 -16.69856 -16.48173 -16.30913 -15.74372 -15.66442 -15.07769 -14.87849 -14.41713 -14.21217 -14.05940 -13.60439 -13.42693 -13.04720 -12.72734 -12.68530 -12.48436 -12.35098 -12.06240 -12.00262 -11.70157 -11.55279 -11.35205 -11.17386 -10.99485 -10.91539 -10.73609 -10.50837 -10.24590 -10.10443 -9.82537 -9.66787 -9.55950 -9.45246 -9.20620 -8.93528 -8.66161 -8.46954 -7.73433 -6.20963 -4.28345 1.33644 1.56454 3.19267 3.28821 3.31806 3.45268 3.83185 4.23949 4.32194 4.63493 4.69670 4.97318 5.03064 5.07158 5.12503 5.16346 5.20392 5.28479 5.35544 5.53056 5.53479 5.60630 5.70040 5.73139 5.84351 5.89282 5.92266 6.01207 6.09388 6.17325 6.21968 6.29509 6.39583 6.41427 6.46699 6.51120 6.63612 6.71037 6.78841 6.89450 6.97072 7.17031 7.51370 7.74642 8.02443 8.02851 8.21436 8.32914 8.78715 9.09912 9.40004 10.85541 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.006163 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.082028 B = 4541.934092 C = 6826.487397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.597 5.597 11 C 0.162 3.838 12 C -0.143 4.143 13 C -0.054 4.054 14 C -0.182 4.182 15 C 0.088 3.912 16 N -0.490 5.490 17 C 0.113 3.887 18 C 0.523 3.477 19 O -0.550 6.550 20 C -0.093 4.093 21 H 0.113 0.887 22 C -0.095 4.095 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.151 4.151 26 C 0.121 3.879 27 H 0.045 0.955 28 O -0.537 6.537 29 H 0.265 0.735 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -9.203 -4.844 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.328 5.328 11 C 0.037 3.963 12 C -0.147 4.147 13 C -0.081 4.081 14 C -0.202 4.202 15 C -0.069 4.069 16 N -0.199 5.199 17 C -0.044 4.044 18 C 0.311 3.689 19 O -0.428 6.428 20 C -0.114 4.114 21 H 0.131 0.869 22 C -0.133 4.133 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.188 4.188 26 C 0.062 3.938 27 H 0.063 0.937 28 O -0.340 6.340 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.022 -9.004 -3.864 10.004 hybrid contribution 0.645 0.578 -0.944 1.281 sum 2.667 -8.426 -4.808 10.061 Atomic orbital electron populations 1.69927 1.05972 1.27192 1.49693 1.24913 0.94776 0.99155 0.94765 0.86534 0.80255 0.83520 0.77783 1.19587 1.20830 1.20908 1.21511 0.93595 0.90252 1.51884 0.91878 1.19438 0.87527 0.82733 0.98375 1.48318 1.45527 1.34504 1.04407 1.20107 0.96264 0.92031 0.87862 1.21467 0.98278 0.96211 0.98714 1.21683 0.99085 0.92054 0.95255 1.22101 0.96462 1.00308 1.01337 1.22674 0.95640 0.93986 0.94642 1.67695 1.30893 1.00474 1.20803 1.22790 0.89419 0.98077 0.94138 1.20386 0.79547 0.83772 0.85196 1.90586 1.38460 1.26956 1.86833 1.21359 1.02472 0.96330 0.91192 0.86878 1.21262 0.96641 0.97999 0.97376 1.21505 1.01636 0.97487 0.94782 1.21430 0.98237 0.97500 0.97810 1.22248 0.99429 0.99674 0.97487 1.21535 0.87825 0.90870 0.93600 0.93694 1.86785 1.37906 1.49198 1.60066 0.92571 0.94806 0.94563 0.89338 0.90053 0.84362 0.85355 0.83373 0.82611 0.90532 0.91550 0.92232 0.91594 0.91607 0.92696 0.92141 0.90937 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -13.03 8.64 -34.44 -0.30 -13.33 16 8 H 0.06 1.58 7.29 -52.49 -0.38 1.19 16 9 C 0.24 5.40 4.80 -5.19 -0.02 5.38 16 10 N -0.60 -12.08 2.45 -176.43 -0.43 -12.51 16 11 C 0.16 2.89 5.50 -5.20 -0.03 2.86 16 12 C -0.14 -2.41 5.48 -104.48 -0.57 -2.99 16 13 C -0.05 -0.85 9.75 -39.28 -0.38 -1.24 16 14 C -0.18 -2.48 10.11 -39.44 -0.40 -2.88 16 15 C 0.09 1.23 11.18 -17.55 -0.20 1.04 16 16 N -0.49 -8.16 10.36 -13.25 -0.14 -8.30 16 17 C 0.11 1.91 10.86 -17.55 -0.19 1.72 16 18 C 0.52 10.66 6.53 -10.98 -0.07 10.59 16 19 O -0.55 -11.94 14.28 -15.17 -0.22 -12.16 16 20 C -0.09 -1.71 1.84 -91.77 -0.17 -1.88 16 21 H 0.11 2.26 5.55 -51.93 -0.29 1.97 16 22 C -0.09 -1.69 5.04 -26.73 -0.13 -1.83 16 23 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 24 C -0.11 -1.46 5.78 -26.73 -0.15 -1.62 16 25 C -0.15 -1.96 5.64 -26.73 -0.15 -2.11 16 26 C 0.12 1.90 3.15 -26.73 -0.08 1.82 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 O -0.54 -8.47 10.39 -55.96 -0.58 -9.05 16 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.03 0.81 6.22 -51.93 -0.32 0.49 16 31 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 32 H 0.09 1.51 8.02 -51.93 -0.42 1.10 16 33 H 0.08 1.45 7.45 -51.93 -0.39 1.06 16 34 H 0.14 2.23 7.48 -52.49 -0.39 1.84 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.16 2.55 8.06 -52.49 -0.42 2.13 16 38 H 0.08 1.51 7.18 -51.93 -0.37 1.13 16 39 H 0.07 1.23 7.68 -51.92 -0.40 0.83 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 42 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.36 4.04 9.08 45.56 0.41 4.46 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -29.28 370.30 -9.49 -38.77 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.30 Total: 10.48 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.11 Total: -4.77 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.17 Total: -43.69 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.80 Total: -21.21 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.28 -9.49 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181086000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.741 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds