Wall clock time and date at job start Tue Mar 31 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99895 * 2 1 4 4 H 1.48506 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47358 * 299.99686 * 3 2 1 6 6 H 1.48496 * 109.47556 * 60.00172 * 3 2 1 7 7 C 1.37881 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99671 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99922 * 95.39499 * 10 9 7 12 12 C 1.50702 * 109.47129 * 89.99902 * 11 10 9 13 13 C 1.38664 * 120.41902 * 89.99798 * 12 11 10 14 14 C 1.38633 * 118.42233 * 180.02562 * 13 12 11 15 15 C 1.38218 * 119.16162 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76616 * 359.97438 * 15 14 13 17 17 C 1.31887 * 121.72315 * 359.97438 * 16 15 14 18 18 C 1.34774 * 120.00104 * 275.39467 * 10 9 7 19 19 O 1.21278 * 120.00185 * 184.93678 * 18 10 9 20 20 C 1.50709 * 119.99834 * 4.93745 * 18 10 9 21 21 H 1.09001 * 109.46703 * 341.80979 * 20 18 10 22 22 C 1.52997 * 109.46905 * 101.80997 * 20 18 10 23 23 C 1.52996 * 109.47097 * 179.97438 * 22 20 18 24 24 C 1.53000 * 109.47715 * 300.00731 * 23 22 20 25 25 C 1.53000 * 109.46979 * 59.99207 * 24 23 22 26 26 C 1.52997 * 109.47686 * 300.00356 * 25 24 23 27 27 H 1.09002 * 109.47773 * 179.97438 * 26 25 24 28 28 O 1.42901 * 109.47047 * 300.00483 * 26 25 24 29 29 H 0.96997 * 120.00170 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47543 * 60.00052 * 9 7 2 31 31 H 1.09001 * 109.47068 * 299.99497 * 9 7 2 32 32 H 1.08998 * 109.47495 * 329.99906 * 11 10 9 33 33 H 1.09003 * 109.47522 * 209.99668 * 11 10 9 34 34 H 1.08000 * 120.79298 * 359.75438 * 13 12 11 35 35 H 1.08007 * 120.41988 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.61950 * 179.97438 * 15 14 13 37 37 H 1.07993 * 119.61887 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47289 * 299.99993 * 22 20 18 39 39 H 1.09009 * 109.46959 * 60.00091 * 22 20 18 40 40 H 1.08997 * 109.47509 * 179.97438 * 23 22 20 41 41 H 1.09009 * 109.46754 * 60.00441 * 23 22 20 42 42 H 1.09002 * 109.46552 * 299.99991 * 24 23 22 43 43 H 1.08998 * 109.47587 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47186 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46838 * 60.00960 * 25 24 23 46 46 H 0.96701 * 113.99550 * 299.99374 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5884 -4.2469 1.2636 12 6 1.6453 -5.3836 1.5631 13 6 1.9216 -6.6638 1.1074 14 6 1.0255 -7.6784 1.4064 15 6 -0.1059 -7.3822 2.1431 16 7 -0.3366 -6.1528 2.5602 17 6 0.4942 -5.1634 2.2954 18 6 2.7244 -4.0536 -1.1615 19 8 3.4420 -5.0312 -1.1719 20 6 2.4155 -3.3317 -2.4479 21 1 1.5330 -2.7068 -2.3109 22 6 3.6063 -2.4543 -2.8388 23 6 3.2930 -1.7219 -4.1451 24 6 3.0275 -2.7442 -5.2521 25 6 1.8368 -3.6217 -4.8610 26 6 2.1500 -4.3541 -3.5548 27 1 1.3015 -4.9789 -3.2759 28 8 3.3071 -5.1735 -3.7338 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.5401 -3.5132 2.0682 33 1 3.6054 -4.6305 1.1822 34 1 2.8116 -6.8648 0.5295 35 1 1.2086 -8.6873 1.0672 36 1 -0.8092 -8.1669 2.3799 37 1 0.2720 -4.1693 2.6542 38 1 3.7956 -1.7262 -2.0501 39 1 4.4888 -3.0794 -2.9758 40 1 4.1411 -1.0964 -4.4235 41 1 2.4104 -1.0969 -4.0085 42 1 3.9101 -3.3693 -5.3886 43 1 2.8039 -2.2225 -6.1826 44 1 1.6479 -4.3503 -5.6494 45 1 0.9542 -2.9967 -4.7245 46 1 3.2100 -5.8460 -4.4218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181086000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:42 Heat of formation + Delta-G solvation = -81.894017 kcal Electronic energy + Delta-G solvation = -28164.440967 eV Core-core repulsion = 24438.544145 eV Total energy + Delta-G solvation = -3725.896822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54774 -40.84163 -39.08684 -36.78697 -35.86865 -34.82441 -33.61245 -32.71305 -31.72215 -30.69715 -29.32306 -27.44674 -25.07888 -24.45006 -24.18963 -23.47493 -22.81985 -20.86955 -19.76521 -18.58269 -18.16655 -17.83933 -17.68070 -17.21122 -17.03617 -16.49579 -16.37173 -15.97926 -15.53993 -15.33497 -14.96337 -14.67152 -14.40356 -14.27630 -14.10614 -13.94283 -13.69055 -13.58464 -13.34747 -13.26852 -13.02644 -12.76539 -12.71273 -12.60690 -12.43400 -12.17355 -11.87483 -11.84314 -11.65494 -11.42460 -11.01989 -10.85806 -10.71932 -10.57644 -10.46716 -10.27916 -9.90900 -9.43043 -8.17469 -6.30760 0.12057 0.32768 1.40195 1.44731 1.53958 1.83421 2.31658 2.46204 2.95155 3.13410 3.44323 3.53316 3.66655 3.81271 3.87651 3.90206 3.97282 4.08621 4.10127 4.22836 4.29355 4.32993 4.48116 4.53216 4.57622 4.59786 4.68120 4.72623 4.84358 4.86746 4.93331 4.94663 5.08820 5.19228 5.21738 5.23990 5.29580 5.30198 5.38466 5.40832 5.58596 5.68820 5.77099 5.85901 6.08345 6.58403 6.85021 7.00015 7.05729 7.37266 7.48998 8.88322 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.006163 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.082028 B = 4541.934092 C = 6826.487397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.027 3.973 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.258 3.742 10 N -0.599 5.599 11 C 0.162 3.838 12 C -0.155 4.155 13 C -0.063 4.063 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.517 3.483 19 O -0.564 6.564 20 C -0.094 4.094 21 H 0.093 0.907 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.144 4.144 26 C 0.126 3.874 27 H 0.040 0.960 28 O -0.554 6.554 29 H 0.266 0.734 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.149 0.851 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -10.399 -6.247 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.137 3.863 10 N -0.330 5.330 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.090 4.090 14 C -0.189 4.189 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.057 4.057 18 C 0.306 3.694 19 O -0.444 6.444 20 C -0.115 4.115 21 H 0.111 0.889 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.182 4.182 26 C 0.067 3.933 27 H 0.058 0.942 28 O -0.360 6.360 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.183 0.817 36 H 0.204 0.796 37 H 0.166 0.834 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.142 -10.212 -5.270 11.690 hybrid contribution 0.621 0.827 -0.464 1.134 sum 2.764 -9.386 -5.734 11.341 Atomic orbital electron populations 1.70015 1.07138 1.27933 1.50739 1.25538 0.95385 1.01888 0.94539 0.85659 0.79087 0.80117 0.77792 1.19471 1.20283 1.20754 1.21612 0.93155 0.91135 1.51232 0.92757 1.19041 0.87409 0.83026 0.96821 1.48309 1.45108 1.34071 1.05489 1.20147 0.96577 0.92554 0.86899 1.21292 0.98274 0.96352 0.99856 1.21748 0.99587 0.92227 0.95442 1.22461 0.95216 1.01332 0.99866 1.23337 0.96275 0.93754 0.93433 1.67713 1.31097 1.01486 1.21626 1.22706 0.89810 0.98285 0.94874 1.20792 0.79167 0.83674 0.85752 1.90561 1.39134 1.27558 1.87110 1.21357 1.01657 0.96974 0.91497 0.88942 1.21169 0.96050 0.97220 0.98142 1.21510 1.01678 0.97959 0.94128 1.21406 0.98308 0.96961 0.97696 1.22216 0.99215 1.00086 0.96684 1.21421 0.87534 0.90424 0.93966 0.94223 1.86726 1.37848 1.50031 1.61373 0.92454 0.96267 0.96052 0.89339 0.90198 0.84946 0.81676 0.79620 0.83360 0.93302 0.92343 0.90908 0.92675 0.91302 0.90276 0.88989 0.91347 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 13.29 21.45 0.28 -49.43 16 2 C 0.03 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.95 41.14 29.54 68.60 2.03 43.17 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.53 -26.84 8.64 25.60 0.22 -26.62 16 8 H 0.05 2.80 7.29 -2.91 -0.02 2.78 16 9 C 0.26 12.19 4.80 85.63 0.41 12.60 16 10 N -0.60 -25.25 2.45 -830.49 -2.04 -27.29 16 11 C 0.16 6.03 5.50 85.63 0.47 6.50 16 12 C -0.15 -5.31 5.48 -19.77 -0.11 -5.41 16 13 C -0.06 -1.96 9.75 22.47 0.22 -1.74 16 14 C -0.17 -4.19 10.11 22.36 0.23 -3.97 16 15 C 0.09 2.29 11.18 84.68 0.95 3.24 16 16 N -0.51 -16.66 10.36 -195.85 -2.03 -18.69 16 17 C 0.10 3.45 10.86 84.67 0.92 4.37 16 18 C 0.52 21.67 6.53 87.66 0.57 22.25 16 19 O -0.56 -24.82 14.28 16.80 0.24 -24.58 16 20 C -0.09 -3.53 1.84 -11.54 -0.02 -3.55 16 21 H 0.09 3.85 5.55 -2.39 -0.01 3.84 16 22 C -0.09 -3.17 5.04 30.59 0.15 -3.02 16 23 C -0.12 -3.38 5.92 30.59 0.18 -3.20 16 24 C -0.11 -2.50 5.78 30.59 0.18 -2.32 16 25 C -0.14 -3.43 5.64 30.59 0.17 -3.26 16 26 C 0.13 3.86 3.15 30.59 0.10 3.95 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 O -0.55 -16.69 10.39 -129.16 -1.34 -18.04 16 29 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.02 0.98 6.22 -2.39 -0.01 0.96 16 31 H 0.02 1.07 8.03 -2.39 -0.02 1.05 16 32 H 0.09 3.21 8.02 -2.39 -0.02 3.19 16 33 H 0.08 2.96 7.45 -2.39 -0.02 2.94 16 34 H 0.13 4.24 7.48 -2.91 -0.02 4.22 16 35 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.19 3.29 8.06 -2.91 -0.02 3.26 16 37 H 0.15 5.17 8.06 -2.91 -0.02 5.14 16 38 H 0.05 1.99 7.18 -2.39 -0.02 1.97 16 39 H 0.06 2.18 7.68 -2.38 -0.02 2.16 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.07 1.61 7.68 -2.39 -0.02 1.59 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.38 7.67 9.08 -74.06 -0.67 7.00 16 Total: -1.00 -63.59 370.30 2.55 -61.04 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.31 Total: 32.17 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.10 Total: 1.65 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.78 Total: -95.41 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.10 Total: -42.62 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -63.59 2.55 -61.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181086000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.857 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds