Wall clock time and date at job start Tue Mar 31 2020 13:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.00405 * 2 1 4 4 C 1.38234 * 120.00283 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00180 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00378 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47017 * 15.37574 * 6 5 4 8 8 O 1.42899 * 109.47220 * 135.37399 * 6 5 4 9 9 C 1.50706 * 109.47216 * 255.37548 * 6 5 4 10 10 O 1.21275 * 119.99842 * 253.40651 * 9 6 5 11 11 N 1.34776 * 119.99881 * 73.40865 * 9 6 5 12 12 C 1.47078 * 120.87982 * 5.07140 * 11 9 6 13 13 C 1.53701 * 108.27282 * 128.75895 * 12 11 9 14 14 N 1.46901 * 109.25794 * 54.08179 * 13 12 11 15 15 C 1.46895 * 110.99873 * 172.60913 * 14 13 12 16 16 C 1.50702 * 109.47348 * 57.37236 * 15 14 13 17 17 H 1.07994 * 119.99669 * 4.37943 * 16 15 14 18 18 C 1.37883 * 119.99864 * 184.37629 * 16 15 14 19 19 N 1.31506 * 119.99742 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00122 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47359 * 89.99975 * 20 18 16 22 22 H 1.48503 * 109.47161 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47346 * 329.99944 * 20 18 16 24 24 C 1.46897 * 111.26727 * 296.75973 * 14 13 12 25 25 C 1.47082 * 120.87996 * 185.35738 * 11 9 6 26 26 C 1.38240 * 119.99754 * 0.25010 * 5 4 3 27 27 C 1.38234 * 119.99850 * 359.49423 * 26 5 4 28 28 H 1.09009 * 109.46978 * 89.99833 * 1 2 3 29 29 H 1.09000 * 109.47522 * 209.99586 * 1 2 3 30 30 H 1.09001 * 109.47159 * 329.99986 * 1 2 3 31 31 H 1.08004 * 119.99981 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00445 * 180.02562 * 4 3 2 33 33 H 0.96705 * 114.00134 * 60.00296 * 8 6 5 34 34 H 1.08999 * 109.63249 * 248.52170 * 12 11 9 35 35 H 1.08998 * 109.63040 * 9.11142 * 12 11 9 36 36 H 1.09006 * 109.64783 * 294.07890 * 13 12 11 37 37 H 1.08997 * 109.42445 * 173.94946 * 13 12 11 38 38 H 1.09000 * 109.47213 * 177.37678 * 15 14 13 39 39 H 1.08999 * 109.47490 * 297.37013 * 15 14 13 40 40 H 0.97005 * 120.00369 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49142 * 303.13845 * 24 14 13 42 42 H 1.09005 * 109.48934 * 183.06510 * 24 14 13 43 43 H 1.08997 * 109.62883 * 350.89004 * 25 11 9 44 44 H 1.08997 * 109.62993 * 111.47419 * 25 11 9 45 45 H 1.07998 * 119.99916 * 179.72305 * 26 5 4 46 46 H 1.08002 * 120.00175 * 180.24921 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 1 6.1420 0.9906 0.2730 8 8 6.2550 -0.9591 0.9470 9 6 6.2810 -0.3590 -1.3743 10 8 6.7659 -1.4520 -1.5766 11 7 6.1915 0.5349 -2.3790 12 6 5.7100 1.9025 -2.1319 13 6 6.7273 2.8871 -2.7303 14 7 6.9508 2.5537 -4.1434 15 6 7.7804 3.5728 -4.7999 16 6 9.0907 3.7024 -4.0669 17 1 9.3167 3.0407 -3.2439 18 6 10.0010 4.6657 -4.4471 19 7 11.1447 4.7785 -3.8078 20 14 9.6097 5.8106 -5.8703 21 1 8.9187 7.0205 -5.3567 22 1 10.8706 6.2098 -6.5455 23 1 8.7287 5.1116 -6.8401 24 6 7.5447 1.2180 -4.2882 25 6 6.5668 0.1668 -3.7526 26 6 3.5805 -1.1973 -0.0052 27 6 2.1981 -1.1973 -0.0004 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1323 0.0010 33 1 5.9696 -1.8653 0.7664 34 1 4.7390 2.0404 -2.6075 35 1 5.6225 2.0716 -1.0586 36 1 7.6694 2.8164 -2.1865 37 1 6.3378 3.9022 -2.6533 38 1 7.9691 3.2780 -5.8321 39 1 7.2595 4.5302 -4.7850 40 1 11.7853 5.4559 -4.0755 41 1 8.4754 1.1705 -3.7228 42 1 7.7480 1.0226 -5.3411 43 1 7.0460 -0.8121 -3.7514 44 1 5.6766 0.1411 -4.3810 45 1 4.1204 -2.1326 -0.0097 46 1 1.6581 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183646096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:45 Heat of formation + Delta-G solvation = -47.150556 kcal Electronic energy + Delta-G solvation = -27305.609825 eV Core-core repulsion = 23581.219592 eV Total energy + Delta-G solvation = -3724.390233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.74804 -39.26330 -37.87713 -36.39343 -34.67117 -33.18241 -32.32346 -31.31823 -30.81083 -29.28923 -28.26593 -26.02744 -25.00656 -23.38720 -22.91168 -22.16002 -21.34054 -20.39088 -19.02804 -17.71397 -17.48415 -16.84131 -16.47589 -15.75270 -15.48255 -14.94554 -14.69631 -14.57879 -14.52416 -14.17025 -14.09485 -13.88162 -13.73067 -13.66016 -13.39753 -12.60062 -12.51038 -12.49421 -12.36022 -12.26625 -12.06756 -11.82289 -11.40954 -11.32768 -11.23749 -11.11142 -10.83448 -10.68088 -10.47734 -10.32026 -10.08770 -9.65131 -9.57228 -9.16927 -8.72212 -8.66784 -8.51140 -7.36257 -6.17194 -4.18511 0.97976 1.15552 2.59302 3.02286 3.22069 3.30651 3.33433 3.44689 4.24811 4.31273 4.32910 4.47484 4.51750 4.64125 4.71655 4.77984 4.89409 5.14642 5.15244 5.19413 5.22261 5.28850 5.37256 5.43702 5.47655 5.54359 5.64799 5.77246 5.79199 5.80196 5.87944 6.01064 6.12282 6.25781 6.27929 6.32577 6.55288 6.61643 6.64962 6.71498 6.83583 6.95827 7.28337 7.42565 7.52007 7.89574 7.91737 8.16271 8.35833 8.84356 9.44677 10.95603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.003245 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.768327 B = 8625.480884 C = 9243.739444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.117 4.117 4 C -0.099 4.099 5 C -0.119 4.119 6 C 0.134 3.866 7 H 0.130 0.870 8 O -0.531 6.531 9 C 0.493 3.507 10 O -0.542 6.542 11 N -0.597 5.597 12 C 0.107 3.893 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.156 3.844 16 C -0.556 4.556 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.047 3.953 25 C 0.115 3.885 26 C -0.100 4.100 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.381 0.619 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 -8.686 7.380 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.071 3.929 7 H 0.148 0.852 8 O -0.336 6.336 9 C 0.280 3.720 10 O -0.421 6.421 11 N -0.331 5.331 12 C -0.016 4.016 13 C -0.083 4.083 14 N -0.257 5.257 15 C 0.029 3.971 16 C -0.594 4.594 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.082 4.082 25 C -0.007 4.007 26 C -0.118 4.118 27 C -0.136 4.136 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.422 -8.653 7.308 23.352 hybrid contribution 0.646 0.413 -0.654 1.008 sum -19.775 -8.240 6.653 22.433 Atomic orbital electron populations 1.20810 0.91107 1.02810 1.02471 1.19986 0.96184 0.93226 0.98904 1.21027 0.93900 0.97734 1.00809 1.21098 0.94432 0.97285 0.98862 1.20142 0.94590 0.94389 1.02812 1.20712 0.89672 0.95267 0.87245 0.85243 1.86638 1.76908 1.20568 1.49461 1.21233 0.78880 0.84950 0.86896 1.90674 1.45391 1.22847 1.83144 1.48134 1.64036 1.12325 1.08567 1.22290 0.98462 0.80712 1.00156 1.22377 0.97855 0.97557 0.90496 1.62409 1.48096 1.02500 1.12695 1.20182 0.91560 0.90502 0.94836 1.21667 1.00943 1.18595 1.18236 0.90817 1.24980 0.94710 0.97052 0.96261 1.69926 1.08178 1.34442 1.40867 0.86778 0.77995 0.81418 0.83086 1.20145 1.21284 1.18865 1.22282 0.95748 0.89072 1.01083 1.21836 0.98953 0.99125 0.80771 1.20889 0.94457 0.97402 0.99099 1.20973 0.93778 0.97710 1.01098 0.91022 0.91549 0.91424 0.85615 0.85238 0.76969 0.90684 0.90369 0.92897 0.90131 0.95305 0.95446 0.92578 0.93366 0.90314 0.89343 0.91262 0.86017 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.08 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.12 -1.03 9.70 -39.59 -0.38 -1.42 16 4 C -0.10 -0.96 8.47 -39.59 -0.34 -1.30 16 5 C -0.12 -1.31 4.70 -104.62 -0.49 -1.80 16 6 C 0.13 1.71 2.91 -29.03 -0.08 1.62 16 7 H 0.13 1.54 6.52 -51.93 -0.34 1.20 16 8 O -0.53 -7.09 12.96 -54.78 -0.71 -7.80 16 9 C 0.49 7.73 6.93 -10.98 -0.08 7.66 16 10 O -0.54 -10.04 15.76 -13.98 -0.22 -10.26 16 11 N -0.60 -9.15 3.00 -172.18 -0.52 -9.67 16 12 C 0.11 1.45 5.48 -3.36 -0.02 1.43 16 13 C 0.05 0.81 5.13 -3.46 -0.02 0.79 16 14 N -0.53 -10.35 4.83 -235.47 -1.14 -11.49 16 15 C 0.16 3.55 4.19 -4.98 -0.02 3.53 16 16 C -0.56 -14.98 8.31 -34.44 -0.29 -15.27 16 17 H 0.07 2.19 6.12 -52.49 -0.32 1.87 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 20 Si 0.88 20.83 27.38 -169.99 -4.65 16.18 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.00 6.67 56.52 0.38 -5.62 16 24 C 0.05 0.88 5.27 -3.70 -0.02 0.86 16 25 C 0.12 1.84 6.61 -3.60 -0.02 1.82 16 26 C -0.10 -1.04 9.25 -39.58 -0.37 -1.41 16 27 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.13 1.06 6.44 -52.48 -0.34 0.72 16 33 H 0.38 4.17 7.31 45.56 0.33 4.51 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.87 3.63 -51.93 -0.19 0.68 16 36 H 0.05 1.09 6.67 -51.93 -0.35 0.74 16 37 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 38 H 0.03 0.67 7.39 -51.93 -0.38 0.29 16 39 H 0.03 0.62 7.33 -51.93 -0.38 0.24 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.05 1.05 7.05 -51.93 -0.37 0.68 16 42 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 43 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.12 1.15 6.99 -52.49 -0.37 0.79 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -32.84 360.46 -9.91 -42.75 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.01 Total: 5.67 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.86 Total: -4.67 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.88 Total: -47.30 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.93 Total: -18.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.65 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.84 -9.91 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183646096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.401 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds