Wall clock time and date at job start Tue Mar 31 2020 13:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.00405 * 2 1 4 4 C 1.38234 * 120.00283 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00180 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00378 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47017 * 15.37574 * 6 5 4 8 8 O 1.42899 * 109.47220 * 135.37399 * 6 5 4 9 9 C 1.50706 * 109.47216 * 255.37548 * 6 5 4 10 10 O 1.21275 * 119.99842 * 253.40651 * 9 6 5 11 11 N 1.34776 * 119.99881 * 73.40865 * 9 6 5 12 12 C 1.47078 * 120.87982 * 5.07140 * 11 9 6 13 13 C 1.53701 * 108.27282 * 128.75895 * 12 11 9 14 14 N 1.46901 * 109.25794 * 54.08179 * 13 12 11 15 15 C 1.46895 * 110.99873 * 172.60913 * 14 13 12 16 16 C 1.50702 * 109.47348 * 57.37236 * 15 14 13 17 17 H 1.07994 * 119.99669 * 4.37943 * 16 15 14 18 18 C 1.37883 * 119.99864 * 184.37629 * 16 15 14 19 19 N 1.31506 * 119.99742 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00122 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47359 * 89.99975 * 20 18 16 22 22 H 1.48503 * 109.47161 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47346 * 329.99944 * 20 18 16 24 24 C 1.46897 * 111.26727 * 296.75973 * 14 13 12 25 25 C 1.47082 * 120.87996 * 185.35738 * 11 9 6 26 26 C 1.38240 * 119.99754 * 0.25010 * 5 4 3 27 27 C 1.38234 * 119.99850 * 359.49423 * 26 5 4 28 28 H 1.09009 * 109.46978 * 89.99833 * 1 2 3 29 29 H 1.09000 * 109.47522 * 209.99586 * 1 2 3 30 30 H 1.09001 * 109.47159 * 329.99986 * 1 2 3 31 31 H 1.08004 * 119.99981 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00445 * 180.02562 * 4 3 2 33 33 H 0.96705 * 114.00134 * 60.00296 * 8 6 5 34 34 H 1.08999 * 109.63249 * 248.52170 * 12 11 9 35 35 H 1.08998 * 109.63040 * 9.11142 * 12 11 9 36 36 H 1.09006 * 109.64783 * 294.07890 * 13 12 11 37 37 H 1.08997 * 109.42445 * 173.94946 * 13 12 11 38 38 H 1.09000 * 109.47213 * 177.37678 * 15 14 13 39 39 H 1.08999 * 109.47490 * 297.37013 * 15 14 13 40 40 H 0.97005 * 120.00369 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49142 * 303.13845 * 24 14 13 42 42 H 1.09005 * 109.48934 * 183.06510 * 24 14 13 43 43 H 1.08997 * 109.62883 * 350.89004 * 25 11 9 44 44 H 1.08997 * 109.62993 * 111.47419 * 25 11 9 45 45 H 1.07998 * 119.99916 * 179.72305 * 26 5 4 46 46 H 1.08002 * 120.00175 * 180.24921 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 1 6.1420 0.9906 0.2730 8 8 6.2550 -0.9591 0.9470 9 6 6.2810 -0.3590 -1.3743 10 8 6.7659 -1.4520 -1.5766 11 7 6.1915 0.5349 -2.3790 12 6 5.7100 1.9025 -2.1319 13 6 6.7273 2.8871 -2.7303 14 7 6.9508 2.5537 -4.1434 15 6 7.7804 3.5728 -4.7999 16 6 9.0907 3.7024 -4.0669 17 1 9.3167 3.0407 -3.2439 18 6 10.0010 4.6657 -4.4471 19 7 11.1447 4.7785 -3.8078 20 14 9.6097 5.8106 -5.8703 21 1 8.9187 7.0205 -5.3567 22 1 10.8706 6.2098 -6.5455 23 1 8.7287 5.1116 -6.8401 24 6 7.5447 1.2180 -4.2882 25 6 6.5668 0.1668 -3.7526 26 6 3.5805 -1.1973 -0.0052 27 6 2.1981 -1.1973 -0.0004 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1323 0.0010 33 1 5.9696 -1.8653 0.7664 34 1 4.7390 2.0404 -2.6075 35 1 5.6225 2.0716 -1.0586 36 1 7.6694 2.8164 -2.1865 37 1 6.3378 3.9022 -2.6533 38 1 7.9691 3.2780 -5.8321 39 1 7.2595 4.5302 -4.7850 40 1 11.7853 5.4559 -4.0755 41 1 8.4754 1.1705 -3.7228 42 1 7.7480 1.0226 -5.3411 43 1 7.0460 -0.8121 -3.7514 44 1 5.6766 0.1411 -4.3810 45 1 4.1204 -2.1326 -0.0097 46 1 1.6581 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183646096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:44 Heat of formation + Delta-G solvation = -70.291477 kcal Electronic energy + Delta-G solvation = -27306.613290 eV Core-core repulsion = 23581.219592 eV Total energy + Delta-G solvation = -3725.393698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83881 -40.19829 -39.22835 -37.48990 -36.15984 -34.46072 -33.85093 -32.34091 -31.78799 -30.67328 -29.48875 -27.39995 -26.12192 -24.67103 -23.92521 -23.53739 -22.36475 -21.63708 -20.38690 -19.09190 -18.56115 -18.54609 -17.56915 -16.81515 -16.51889 -16.24128 -16.08466 -16.00034 -15.83678 -15.51637 -14.98774 -14.93457 -14.76436 -14.51799 -14.46676 -14.34341 -13.93305 -13.75892 -13.34675 -13.06883 -13.02704 -12.97287 -12.90469 -12.61048 -12.51392 -12.31573 -12.18944 -11.98451 -11.94346 -11.89209 -11.69863 -11.57314 -10.80634 -10.76984 -9.87916 -9.81893 -9.47559 -9.07467 -8.33072 -6.39755 0.25448 0.46853 1.36420 1.38107 1.38597 1.50226 1.83254 2.33236 2.71167 3.02458 3.17577 3.25800 3.35657 3.57556 3.75138 3.93808 4.02038 4.03080 4.08694 4.15044 4.21618 4.29988 4.45858 4.52879 4.53410 4.58293 4.68960 4.80831 4.84296 4.87110 4.91901 4.97491 5.01764 5.06438 5.14915 5.15221 5.27455 5.36315 5.44725 5.46010 5.53085 5.68852 5.98980 6.05700 6.20588 6.28811 6.29664 6.43095 6.67578 6.92790 7.27812 8.83497 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.003245 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.768327 B = 8625.480884 C = 9243.739444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.104 4.104 5 C -0.133 4.133 6 C 0.141 3.859 7 H 0.137 0.863 8 O -0.544 6.544 9 C 0.489 3.511 10 O -0.578 6.578 11 N -0.601 5.601 12 C 0.118 3.882 13 C 0.045 3.955 14 N -0.522 5.522 15 C 0.161 3.839 16 C -0.553 4.553 17 H 0.027 0.973 18 C 0.009 3.991 19 N -0.950 5.950 20 Si 0.954 3.046 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.243 1.243 24 C 0.052 3.948 25 C 0.124 3.876 26 C -0.114 4.114 27 C -0.125 4.125 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.389 0.611 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.011 0.989 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.266 0.734 41 H 0.003 0.997 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.318 -7.721 6.648 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.079 3.921 7 H 0.154 0.846 8 O -0.351 6.351 9 C 0.277 3.723 10 O -0.458 6.458 11 N -0.334 5.334 12 C -0.004 4.004 13 C -0.084 4.084 14 N -0.245 5.245 15 C 0.034 3.966 16 C -0.592 4.592 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.590 5.590 20 Si 0.777 3.223 21 H -0.187 1.187 22 H -0.215 1.215 23 H -0.166 1.166 24 C -0.077 4.077 25 C 0.001 3.999 26 C -0.132 4.132 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.240 0.760 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.029 0.971 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.106 -7.698 6.587 26.148 hybrid contribution 1.782 0.028 -0.337 1.814 sum -22.323 -7.670 6.250 24.418 Atomic orbital electron populations 1.20863 0.89259 1.03836 1.03152 1.20358 0.97638 0.92975 0.97536 1.21335 0.93630 0.98808 1.00114 1.21299 0.95090 0.97228 0.98561 1.20005 0.93111 0.95383 1.04868 1.20699 0.91179 0.95190 0.85038 0.84571 1.86598 1.77409 1.21383 1.49661 1.21860 0.78045 0.84436 0.87930 1.90647 1.46924 1.24379 1.83888 1.48255 1.63815 1.13034 1.08322 1.22348 0.97753 0.78505 1.01806 1.22453 0.97218 0.99748 0.88970 1.62457 1.46399 1.01923 1.13729 1.20074 0.89845 0.92125 0.94558 1.21899 1.02965 1.17237 1.17052 0.95451 1.25991 0.94319 0.99126 0.99461 1.70097 1.09751 1.35854 1.43312 0.85609 0.78028 0.79250 0.79412 1.18716 1.21529 1.16611 1.22256 0.94735 0.89752 1.00985 1.21705 0.99020 0.97502 0.81632 1.21030 0.95270 0.97336 0.99567 1.21225 0.93356 0.98904 1.00844 0.90371 0.90715 0.90319 0.83423 0.83839 0.76018 0.88171 0.87731 0.97076 0.88825 0.95052 0.94150 0.92529 0.97845 0.89629 0.90125 0.88771 0.86103 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 2 C -0.09 -1.23 5.88 -19.87 -0.12 -1.35 16 3 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 4 C -0.10 -1.75 8.47 22.27 0.19 -1.56 16 5 C -0.13 -2.74 4.70 -19.87 -0.09 -2.83 16 6 C 0.14 3.54 2.91 29.10 0.08 3.62 16 7 H 0.14 3.13 6.52 -2.39 -0.02 3.12 16 8 O -0.54 -14.62 12.96 -130.29 -1.69 -16.31 16 9 C 0.49 15.32 6.93 87.66 0.61 15.93 16 10 O -0.58 -21.88 15.76 15.67 0.25 -21.63 16 11 N -0.60 -18.06 3.00 -817.06 -2.45 -20.52 16 12 C 0.12 2.98 5.48 86.51 0.47 3.46 16 13 C 0.05 1.56 5.13 86.54 0.44 2.01 16 14 N -0.52 -19.89 4.83 -898.88 -4.34 -24.23 16 15 C 0.16 7.23 4.19 85.56 0.36 7.58 16 16 C -0.55 -30.67 8.31 25.60 0.21 -30.46 16 17 H 0.03 1.74 6.12 -2.91 -0.02 1.72 16 18 C 0.01 0.51 5.47 84.66 0.46 0.97 16 19 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 20 Si 0.95 42.58 27.38 68.60 1.88 44.46 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.24 -9.93 6.67 99.48 0.66 -9.27 16 24 C 0.05 1.97 5.27 86.38 0.46 2.42 16 25 C 0.12 3.89 6.61 86.35 0.57 4.46 16 26 C -0.11 -2.23 9.25 22.27 0.21 -2.02 16 27 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 28 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.14 1.89 6.44 -2.91 -0.02 1.88 16 33 H 0.39 8.73 7.31 -74.05 -0.54 8.19 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.11 3.63 -2.39 -0.01 2.10 16 36 H 0.01 0.47 6.67 -2.38 -0.02 0.46 16 37 H 0.09 2.97 8.11 -2.39 -0.02 2.95 16 38 H 0.03 1.40 7.39 -2.39 -0.02 1.38 16 39 H 0.04 1.73 7.33 -2.39 -0.02 1.71 16 40 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 41 H 0.00 0.15 7.05 -2.39 -0.02 0.13 16 42 H 0.09 3.06 8.03 -2.38 -0.02 3.04 16 43 H 0.08 2.68 7.04 -2.39 -0.02 2.66 16 44 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.12 2.26 6.99 -2.91 -0.02 2.24 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.02 360.46 -0.64 -74.66 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.42 Total: 23.75 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.00 Total: -1.44 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -6.49 Total: -103.50 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.44 Total: -37.94 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Total: -74.02 -0.64 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183646096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.370 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds