Wall clock time and date at job start Tue Mar 31 2020 12:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00068 * 2 1 4 4 C 1.38751 * 120.05339 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94252 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05197 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.11373 * 359.75438 * 6 5 4 8 8 C 1.38163 * 120.05738 * 0.49931 * 7 6 5 9 9 C 1.50701 * 120.03131 * 179.77681 * 8 7 6 10 10 H 1.08996 * 109.47404 * 135.76643 * 9 8 7 11 11 C 1.53002 * 109.46726 * 15.76842 * 9 8 7 12 12 N 1.46501 * 109.46986 * 185.00174 * 11 9 8 13 13 C 1.34778 * 120.00426 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99587 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00295 * 180.02562 * 13 12 11 16 16 C 1.52995 * 115.55051 * 34.42149 * 15 13 12 17 17 C 1.53003 * 117.49790 * 248.74657 * 15 13 12 18 18 C 1.53003 * 117.49809 * 180.08867 * 15 13 12 19 19 N 1.46504 * 109.47045 * 255.77505 * 9 8 7 20 20 C 1.36940 * 119.99856 * 60.79827 * 19 9 8 21 21 H 1.07998 * 119.99993 * 353.88277 * 20 19 9 22 22 C 1.38815 * 119.99341 * 173.60479 * 20 19 9 23 23 N 1.31619 * 120.00435 * 0.27545 * 22 20 19 24 24 Si 1.86797 * 119.99552 * 180.27529 * 22 20 19 25 25 H 1.48501 * 109.47398 * 90.00060 * 24 22 20 26 26 H 1.48495 * 109.47250 * 210.00000 * 24 22 20 27 27 H 1.48500 * 109.47202 * 329.99960 * 24 22 20 28 28 H 1.09007 * 109.46991 * 60.00350 * 1 2 3 29 29 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47472 * 300.00085 * 1 2 3 31 31 H 1.08002 * 120.03090 * 359.95687 * 4 3 2 32 32 H 1.07997 * 119.97190 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.93996 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.96835 * 180.25534 * 7 6 5 35 35 H 1.08994 * 109.47605 * 305.00277 * 11 9 8 36 36 H 1.09006 * 109.47072 * 65.00683 * 11 9 8 37 37 H 0.97002 * 119.99958 * 0.02562 * 12 11 9 38 38 H 1.08995 * 109.47362 * 85.57580 * 16 15 13 39 39 H 1.09003 * 109.47473 * 205.58503 * 16 15 13 40 40 H 1.09011 * 109.46963 * 325.57802 * 16 15 13 41 41 H 1.09000 * 117.49898 * 0.02562 * 17 15 13 42 42 H 1.08998 * 117.49410 * 145.02111 * 17 15 13 43 43 H 1.08994 * 117.49777 * 214.98117 * 18 15 13 44 44 H 1.09001 * 117.49902 * 0.02562 * 18 15 13 45 45 H 0.96999 * 119.99701 * 240.80624 * 19 9 8 46 46 H 0.96994 * 120.00322 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0016 7 6 4.0559 2.5171 0.0067 8 6 3.4311 1.2848 0.0009 9 6 4.2537 0.0221 0.0014 10 1 3.8319 -0.6860 0.7147 11 6 5.6935 0.3516 0.4006 12 7 6.5198 -0.8526 0.2859 13 6 7.8321 -0.8010 0.5889 14 8 8.3287 0.2425 0.9571 15 6 8.6822 -2.0396 0.4704 16 6 8.3089 -2.9895 -0.6694 17 6 9.2080 -2.6621 1.7653 18 6 10.1640 -1.9165 0.8308 19 7 4.2418 -0.5690 -1.3390 20 6 4.7415 0.1348 -2.4021 21 1 5.0530 1.1606 -2.2721 22 6 4.8529 -0.4723 -3.6455 23 7 4.4733 -1.7226 -3.8039 24 14 5.5417 0.4853 -5.0939 25 1 7.0148 0.3058 -5.1506 26 1 4.9334 -0.0153 -6.3526 27 1 5.2247 1.9268 -4.9301 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3204 0.0003 32 1 1.3340 4.5114 0.0011 33 1 3.7922 4.6381 0.0016 34 1 5.1344 2.5752 0.0113 35 1 6.0855 1.1255 -0.2593 36 1 5.7124 0.7085 1.4305 37 1 6.1225 -1.6872 -0.0082 38 1 8.8014 -2.6673 -1.5869 39 1 8.6307 -4.0006 -0.4200 40 1 7.2285 -2.9773 -0.8135 41 1 8.9388 -2.1760 2.7030 42 1 9.2884 -3.7484 1.8050 43 1 10.8729 -2.5126 0.2561 44 1 10.5240 -0.9398 1.1541 45 1 3.8798 -1.4588 -1.4734 46 1 4.5508 -2.1466 -4.6728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198732489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:06 Heat of formation + Delta-G solvation = -6.879643 kcal Electronic energy + Delta-G solvation = -27487.088755 eV Core-core repulsion = 23764.444800 eV Total energy + Delta-G solvation = -3722.643955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97475 -39.56163 -37.32167 -36.48805 -35.60093 -33.35679 -31.98847 -29.90832 -29.52394 -28.62658 -27.36077 -26.60747 -24.54462 -23.04599 -22.38752 -22.22578 -21.36427 -19.82914 -18.94112 -17.75679 -17.19852 -16.66726 -15.82983 -15.55766 -15.29598 -15.17475 -14.94766 -14.66255 -14.17168 -14.01752 -13.87147 -13.58423 -13.11561 -13.01645 -12.76661 -12.64928 -12.24431 -12.18521 -11.99758 -11.85836 -11.64375 -11.54330 -11.36220 -10.91644 -10.87505 -10.75358 -10.53065 -10.46379 -10.38035 -9.97023 -9.81148 -9.69430 -9.31120 -8.96670 -8.41619 -8.35094 -7.68745 -7.01305 -5.78539 -3.08018 1.78502 1.91567 2.95489 3.43109 3.49255 3.50788 3.68735 3.71738 4.02432 4.21676 4.61072 4.80725 4.99218 5.02415 5.12480 5.16317 5.24555 5.31587 5.39124 5.43440 5.55463 5.64853 5.65965 5.70639 5.74990 5.80717 5.86557 5.92875 5.97914 5.99657 6.03362 6.07723 6.11230 6.24192 6.40911 6.45206 6.47926 6.64975 6.75286 6.87447 7.01747 7.12494 7.24382 7.74178 7.85135 8.15691 8.38126 8.79289 9.51739 10.01278 10.38880 11.43062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.004962 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.825498 B = 5642.021879 C = 6838.903593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.144 3.856 4 C -0.215 4.215 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.080 4.080 8 C -0.095 4.095 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.110 3.890 12 N -0.694 5.694 13 C 0.546 3.454 14 O -0.560 6.560 15 C -0.159 4.159 16 C -0.114 4.114 17 C -0.154 4.154 18 C -0.148 4.148 19 N -0.704 5.704 20 C -0.229 4.229 21 H 0.069 0.931 22 C -0.006 4.006 23 N -0.929 5.929 24 Si 0.897 3.103 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.404 0.596 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.387 0.613 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 0.376 10.928 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.098 3.902 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.099 4.099 9 C 0.096 3.904 10 H 0.089 0.911 11 C -0.016 4.016 12 N -0.344 5.344 13 C 0.332 3.668 14 O -0.439 6.439 15 C -0.162 4.162 16 C -0.171 4.171 17 C -0.191 4.191 18 C -0.185 4.185 19 N -0.343 5.343 20 C -0.360 4.360 21 H 0.087 0.913 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.729 3.271 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.241 0.759 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.222 0.778 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.201 0.992 11.024 11.134 hybrid contribution -0.362 0.175 -1.402 1.459 sum -1.564 1.167 9.622 9.818 Atomic orbital electron populations 1.22948 0.79572 1.03381 1.00580 1.86146 1.20209 1.26808 1.88393 1.18746 0.91722 0.83870 0.95865 1.21092 0.99357 0.92637 1.10348 1.20744 0.94621 0.96487 0.99539 1.20953 0.93857 0.98155 1.04890 1.21046 1.00138 0.91226 0.97497 1.19938 0.90901 0.96828 1.02225 1.19156 0.90546 0.91148 0.89533 0.91055 1.21916 0.92694 0.87542 0.99482 1.45660 1.08252 1.14001 1.66463 1.19347 0.82214 0.88352 0.76910 1.90628 1.73065 1.31585 1.48651 1.21512 0.97243 0.97986 0.99460 1.21347 1.02940 0.96804 0.96020 1.23059 1.03072 0.99742 0.93244 1.22984 0.90741 1.02613 1.02206 1.42327 1.72429 1.18457 1.01059 1.19084 1.33590 0.95221 0.88099 0.91322 1.24649 1.01892 0.96038 0.97617 1.69646 1.53435 1.11346 1.23322 0.86333 0.78743 0.79271 0.82771 1.21746 1.21917 1.20811 0.93051 0.88709 0.93446 0.86279 0.86745 0.86648 0.85353 0.91159 0.92800 0.75899 0.91591 0.92097 0.90914 0.88632 0.88135 0.88305 0.87707 0.77848 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.24 9.81 -19.45 -0.19 -5.43 16 3 C 0.14 2.57 6.66 -39.22 -0.26 2.31 16 4 C -0.22 -3.35 9.04 -39.43 -0.36 -3.71 16 5 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 6 C -0.16 -2.50 10.04 -39.56 -0.40 -2.90 16 7 C -0.08 -1.41 8.82 -39.61 -0.35 -1.76 16 8 C -0.10 -1.78 4.76 -104.47 -0.50 -2.28 16 9 C 0.21 3.96 2.70 -69.08 -0.19 3.77 16 10 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 11 C 0.11 2.05 3.95 -4.04 -0.02 2.03 16 12 N -0.69 -12.65 5.29 -60.29 -0.32 -12.97 16 13 C 0.55 10.12 7.39 -10.99 -0.08 10.04 16 14 O -0.56 -11.97 16.26 5.55 0.09 -11.88 16 15 C -0.16 -2.37 2.61 -155.66 -0.41 -2.78 16 16 C -0.11 -1.61 9.79 37.16 0.36 -1.25 16 17 C -0.15 -1.85 9.88 -26.69 -0.26 -2.11 16 18 C -0.15 -1.94 9.77 -26.69 -0.26 -2.20 16 19 N -0.70 -16.04 4.72 -54.55 -0.26 -16.30 16 20 C -0.23 -5.95 8.78 -15.06 -0.13 -6.08 16 21 H 0.07 1.82 7.08 -52.49 -0.37 1.45 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -26.47 13.07 55.49 0.73 -25.74 16 24 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 28 H 0.05 0.63 7.66 -51.92 -0.40 0.23 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.12 1.55 6.30 -52.49 -0.33 1.21 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 2.21 5.83 -52.48 -0.31 1.91 16 35 H 0.07 1.47 5.88 -51.93 -0.31 1.16 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 7.16 6.44 -40.82 -0.26 6.90 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 40 H 0.07 1.12 6.39 -51.92 -0.33 0.79 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.50 7.67 -51.93 -0.40 1.10 16 45 H 0.39 9.47 8.05 -40.82 -0.33 9.14 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -31.32 377.57 -8.40 -39.72 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -6.77 Total: 17.14 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.35 Total: -7.61 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.15 Total: -55.01 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.10 Total: -17.31 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.32 -8.40 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198732489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds