Wall clock time and date at job start Tue Mar 31 2020 12:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00068 * 2 1 4 4 C 1.38751 * 120.05339 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94252 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05197 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.11373 * 359.75438 * 6 5 4 8 8 C 1.38163 * 120.05738 * 0.49931 * 7 6 5 9 9 C 1.50701 * 120.03131 * 179.77681 * 8 7 6 10 10 H 1.08996 * 109.47404 * 135.76643 * 9 8 7 11 11 C 1.53002 * 109.46726 * 15.76842 * 9 8 7 12 12 N 1.46501 * 109.46986 * 185.00174 * 11 9 8 13 13 C 1.34778 * 120.00426 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99587 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00295 * 180.02562 * 13 12 11 16 16 C 1.52995 * 115.55051 * 34.42149 * 15 13 12 17 17 C 1.53003 * 117.49790 * 248.74657 * 15 13 12 18 18 C 1.53003 * 117.49809 * 180.08867 * 15 13 12 19 19 N 1.46504 * 109.47045 * 255.77505 * 9 8 7 20 20 C 1.36940 * 119.99856 * 60.79827 * 19 9 8 21 21 H 1.07998 * 119.99993 * 353.88277 * 20 19 9 22 22 C 1.38815 * 119.99341 * 173.60479 * 20 19 9 23 23 N 1.31619 * 120.00435 * 0.27545 * 22 20 19 24 24 Si 1.86797 * 119.99552 * 180.27529 * 22 20 19 25 25 H 1.48501 * 109.47398 * 90.00060 * 24 22 20 26 26 H 1.48495 * 109.47250 * 210.00000 * 24 22 20 27 27 H 1.48500 * 109.47202 * 329.99960 * 24 22 20 28 28 H 1.09007 * 109.46991 * 60.00350 * 1 2 3 29 29 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47472 * 300.00085 * 1 2 3 31 31 H 1.08002 * 120.03090 * 359.95687 * 4 3 2 32 32 H 1.07997 * 119.97190 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.93996 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.96835 * 180.25534 * 7 6 5 35 35 H 1.08994 * 109.47605 * 305.00277 * 11 9 8 36 36 H 1.09006 * 109.47072 * 65.00683 * 11 9 8 37 37 H 0.97002 * 119.99958 * 0.02562 * 12 11 9 38 38 H 1.08995 * 109.47362 * 85.57580 * 16 15 13 39 39 H 1.09003 * 109.47473 * 205.58503 * 16 15 13 40 40 H 1.09011 * 109.46963 * 325.57802 * 16 15 13 41 41 H 1.09000 * 117.49898 * 0.02562 * 17 15 13 42 42 H 1.08998 * 117.49410 * 145.02111 * 17 15 13 43 43 H 1.08994 * 117.49777 * 214.98117 * 18 15 13 44 44 H 1.09001 * 117.49902 * 0.02562 * 18 15 13 45 45 H 0.96999 * 119.99701 * 240.80624 * 19 9 8 46 46 H 0.96994 * 120.00322 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0016 7 6 4.0559 2.5171 0.0067 8 6 3.4311 1.2848 0.0009 9 6 4.2537 0.0221 0.0014 10 1 3.8319 -0.6860 0.7147 11 6 5.6935 0.3516 0.4006 12 7 6.5198 -0.8526 0.2859 13 6 7.8321 -0.8010 0.5889 14 8 8.3287 0.2425 0.9571 15 6 8.6822 -2.0396 0.4704 16 6 8.3089 -2.9895 -0.6694 17 6 9.2080 -2.6621 1.7653 18 6 10.1640 -1.9165 0.8308 19 7 4.2418 -0.5690 -1.3390 20 6 4.7415 0.1348 -2.4021 21 1 5.0530 1.1606 -2.2721 22 6 4.8529 -0.4723 -3.6455 23 7 4.4733 -1.7226 -3.8039 24 14 5.5417 0.4853 -5.0939 25 1 7.0148 0.3058 -5.1506 26 1 4.9334 -0.0153 -6.3526 27 1 5.2247 1.9268 -4.9301 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3204 0.0003 32 1 1.3340 4.5114 0.0011 33 1 3.7922 4.6381 0.0016 34 1 5.1344 2.5752 0.0113 35 1 6.0855 1.1255 -0.2593 36 1 5.7124 0.7085 1.4305 37 1 6.1225 -1.6872 -0.0082 38 1 8.8014 -2.6673 -1.5869 39 1 8.6307 -4.0006 -0.4200 40 1 7.2285 -2.9773 -0.8135 41 1 8.9388 -2.1760 2.7030 42 1 9.2884 -3.7484 1.8050 43 1 10.8729 -2.5126 0.2561 44 1 10.5240 -0.9398 1.1541 45 1 3.8798 -1.4588 -1.4734 46 1 4.5508 -2.1466 -4.6728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198732489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:05 Heat of formation + Delta-G solvation = -26.621052 kcal Electronic energy + Delta-G solvation = -27487.944806 eV Core-core repulsion = 23764.444800 eV Total energy + Delta-G solvation = -3723.500006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31631 -40.88426 -38.64436 -37.73265 -37.11000 -35.08511 -33.67671 -31.45160 -30.85443 -29.86166 -28.67973 -27.82396 -26.31705 -24.57142 -23.61258 -23.35436 -22.63095 -21.35617 -20.30435 -19.38044 -18.71765 -17.94121 -17.28608 -17.07530 -16.60418 -16.46434 -16.27301 -16.17369 -15.69248 -15.43827 -15.35975 -14.94225 -14.71316 -14.30524 -14.08486 -13.95713 -13.56465 -13.41134 -13.39156 -13.19658 -13.04900 -12.88931 -12.74920 -12.67132 -12.35027 -12.24883 -11.88641 -11.83677 -11.74558 -11.60427 -11.47970 -11.00391 -10.90346 -10.70716 -9.91366 -9.71703 -9.08638 -8.84159 -7.88539 -5.14874 0.50145 0.64281 1.42041 1.44648 1.50017 1.57007 2.31856 2.55100 2.57278 2.88925 2.94363 3.43402 3.69277 3.82102 3.84560 3.95490 4.00757 4.03583 4.09529 4.23913 4.31779 4.37358 4.43619 4.44952 4.59412 4.64375 4.71204 4.75880 4.77648 4.82253 4.83516 4.86961 4.94565 4.98678 5.11534 5.18650 5.24662 5.30534 5.47092 5.57770 5.60585 5.63118 5.73805 6.00444 6.31658 6.64277 6.67743 7.31668 7.41640 8.08063 8.37507 9.33253 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.004962 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.825498 B = 5642.021879 C = 6838.903593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C 0.128 3.872 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.166 4.166 7 C -0.095 4.095 8 C -0.126 4.126 9 C 0.215 3.785 10 H 0.080 0.920 11 C 0.120 3.880 12 N -0.694 5.694 13 C 0.537 3.463 14 O -0.596 6.596 15 C -0.183 4.183 16 C -0.106 4.106 17 C -0.127 4.127 18 C -0.145 4.145 19 N -0.705 5.705 20 C -0.207 4.207 21 H 0.060 0.940 22 C -0.059 4.059 23 N -0.955 5.955 24 Si 0.943 3.057 25 H -0.294 1.294 26 H -0.296 1.296 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.407 0.593 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.378 0.622 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 0.607 11.942 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C 0.082 3.918 4 C -0.235 4.235 5 C -0.107 4.107 6 C -0.184 4.184 7 C -0.114 4.114 8 C -0.129 4.129 9 C 0.106 3.894 10 H 0.098 0.902 11 C -0.006 4.006 12 N -0.344 5.344 13 C 0.325 3.675 14 O -0.478 6.478 15 C -0.186 4.186 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.182 4.182 19 N -0.343 5.343 20 C -0.340 4.340 21 H 0.078 0.922 22 C -0.252 4.252 23 N -0.606 5.606 24 Si 0.775 3.225 25 H -0.222 1.222 26 H -0.222 1.222 27 H -0.206 1.206 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.142 0.858 44 H 0.106 0.894 45 H 0.211 0.789 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.849 1.244 12.071 12.275 hybrid contribution -0.239 0.188 -1.589 1.618 sum -2.089 1.432 10.482 10.784 Atomic orbital electron populations 1.23235 0.77266 1.04970 1.01734 1.86100 1.22726 1.26986 1.88443 1.18958 0.91685 0.84958 0.96219 1.21457 1.00769 0.92095 1.09227 1.21201 0.94490 0.97634 0.97381 1.21275 0.94572 0.98374 1.04181 1.21122 1.00086 0.91914 0.98293 1.19886 0.91696 0.96565 1.04793 1.19190 0.90696 0.91860 0.87691 0.90201 1.21741 0.92296 0.87229 0.99302 1.45723 1.08529 1.13824 1.66287 1.20072 0.82293 0.89286 0.75848 1.90598 1.73622 1.33257 1.50332 1.21495 0.97981 0.97154 1.01926 1.21287 1.01518 0.98355 0.95195 1.23206 1.00254 1.01416 0.91552 1.23076 0.89978 1.02547 1.02639 1.42298 1.72203 1.17940 1.01901 1.19149 1.31359 0.94703 0.88747 0.92188 1.25142 1.03653 0.96887 0.99481 1.69747 1.55436 1.12264 1.23139 0.85594 0.77818 0.78361 0.80768 1.22214 1.22247 1.20634 0.92896 0.87110 0.91101 0.83548 0.83116 0.84296 0.86187 0.93702 0.91862 0.75604 0.93035 0.88835 0.92837 0.88914 0.84846 0.85794 0.89423 0.78910 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.33 -11.16 9.81 -92.50 -0.91 -12.07 16 3 C 0.13 4.46 6.66 22.51 0.15 4.61 16 4 C -0.22 -6.23 9.04 22.37 0.20 -6.03 16 5 C -0.09 -2.36 10.04 22.26 0.22 -2.14 16 6 C -0.17 -4.89 10.04 22.28 0.22 -4.67 16 7 C -0.10 -3.36 8.82 22.25 0.20 -3.16 16 8 C -0.13 -4.75 4.76 -19.77 -0.09 -4.85 16 9 C 0.22 8.41 2.70 44.25 0.12 8.53 16 10 H 0.08 2.93 7.98 -2.39 -0.02 2.92 16 11 C 0.12 4.66 3.95 86.38 0.34 5.00 16 12 N -0.69 -26.07 5.29 -463.05 -2.45 -28.51 16 13 C 0.54 20.32 7.39 87.66 0.65 20.97 16 14 O -0.60 -26.25 16.26 -3.04 -0.05 -26.30 16 15 C -0.18 -5.31 2.61 -52.93 -0.14 -5.45 16 16 C -0.11 -2.93 9.79 71.98 0.70 -2.22 16 17 C -0.13 -2.76 9.88 30.62 0.30 -2.45 16 18 C -0.15 -3.58 9.77 30.62 0.30 -3.28 16 19 N -0.71 -32.94 4.72 -326.49 -1.54 -34.48 16 20 C -0.21 -11.00 8.78 84.03 0.74 -10.26 16 21 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 22 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 23 N -0.95 -55.45 13.07 21.65 0.28 -55.17 16 24 Si 0.94 46.77 29.55 68.60 2.03 48.80 16 25 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 28 H 0.05 1.19 7.66 -2.38 -0.02 1.17 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 31 H 0.15 3.30 6.30 -2.91 -0.02 3.28 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 34 H 0.12 4.30 5.83 -2.91 -0.02 4.29 16 35 H 0.04 1.97 5.88 -2.39 -0.01 1.95 16 36 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.41 14.86 6.44 -92.71 -0.60 14.26 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.92 7.90 -2.39 -0.02 1.91 16 40 H 0.05 1.66 6.39 -2.38 -0.02 1.65 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.13 2.05 8.05 -2.39 -0.02 2.04 16 43 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.09 2.48 7.67 -2.39 -0.02 2.46 16 45 H 0.38 18.99 8.05 -92.71 -0.75 18.24 16 46 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -69.08 377.57 2.53 -66.55 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.33 Total: 47.78 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.49 Total: -6.59 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -3.71 Total: -118.17 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.96 Total: -38.37 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -69.08 2.53 -66.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198732489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -69.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds