Wall clock time and date at job start Tue Mar 31 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46920 * 59.99505 * 11 10 9 13 13 C 1.54803 * 109.47177 * 179.97438 * 11 10 9 14 14 N 1.45127 * 109.54037 * 187.88905 * 13 11 10 15 15 C 1.34776 * 118.75705 * 90.71410 * 14 13 11 16 16 O 1.21283 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00097 * 180.02562 * 15 14 13 18 18 C 1.50284 * 109.46788 * 300.02883 * 17 15 14 19 19 C 1.32271 * 121.58484 * 303.35739 * 18 17 15 20 20 C 1.45204 * 123.04541 * 0.95304 * 19 18 17 21 21 C 1.32943 * 125.19556 * 319.59935 * 20 19 18 22 22 C 1.45191 * 125.19683 * 359.97438 * 21 20 19 23 23 C 1.32299 * 123.02537 * 40.43505 * 22 21 20 24 24 C 1.47507 * 122.48786 * 270.71293 * 14 13 11 25 25 C 1.53577 * 111.02305 * 41.62867 * 24 14 13 26 26 C 1.51530 * 109.58480 * 39.97747 * 25 24 14 27 27 O 1.38016 * 109.47215 * 300.00048 * 11 10 9 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 31 31 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 32 32 H 1.08999 * 109.46341 * 307.91099 * 13 11 10 33 33 H 1.09007 * 109.45703 * 67.87109 * 13 11 10 34 34 H 1.09003 * 109.46486 * 60.01458 * 17 15 14 35 35 H 1.07996 * 119.20277 * 123.32191 * 18 17 15 36 36 H 1.08006 * 118.46910 * 180.93654 * 19 18 17 37 37 H 1.07996 * 117.40260 * 139.58112 * 20 19 18 38 38 H 1.08000 * 117.40140 * 179.97438 * 21 20 19 39 39 H 1.08002 * 118.49016 * 220.41355 * 22 21 20 40 40 H 1.08003 * 119.20178 * 179.00222 * 23 22 21 41 41 H 1.08996 * 109.17066 * 281.22936 * 24 14 13 42 42 H 1.08998 * 109.16758 * 162.02413 * 24 14 13 43 43 H 1.09007 * 109.45349 * 279.94021 * 25 24 14 44 44 H 1.09002 * 109.45056 * 160.01420 * 25 24 14 45 45 H 1.09002 * 109.59231 * 148.81903 * 26 25 24 46 46 H 1.08998 * 109.59126 * 28.38616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.4333 -4.7601 -0.8969 13 6 1.8377 -6.1603 -0.0163 14 7 0.9063 -7.2576 -0.2023 15 6 0.6365 -7.6737 -1.4555 16 8 1.1683 -7.1326 -2.4018 17 6 -0.3268 -8.8104 -1.6811 18 6 0.1833 -10.0438 -0.9903 19 6 1.3816 -10.5389 -1.2522 20 6 2.2998 -9.9315 -2.1990 21 6 1.9559 -9.4074 -3.3714 22 6 0.6049 -9.3554 -3.9008 23 6 -0.4515 -9.0762 -3.1551 24 6 0.2438 -7.9348 0.9283 25 6 -0.2156 -6.9201 1.9857 26 6 -0.7751 -5.6901 1.3000 27 8 0.2750 -4.7488 1.1206 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.6812 -3.7125 -0.9040 31 1 2.6880 -3.7165 0.8760 32 1 2.5625 -6.1572 -0.8304 33 1 2.3589 -6.2834 0.9332 34 1 -1.3033 -8.5448 -1.2760 35 1 -0.4433 -10.5373 -0.2623 36 1 1.6914 -11.4366 -0.7376 37 1 3.3451 -9.9030 -1.9292 38 1 2.7441 -8.9869 -3.9782 39 1 0.4556 -9.5534 -4.9520 40 1 -1.4272 -9.0381 -3.6167 41 1 0.9425 -8.6358 1.3848 42 1 -0.6224 -8.4836 0.5589 43 1 0.6329 -6.6347 2.6077 44 1 -0.9874 -7.3705 2.6098 45 1 -1.5577 -5.2509 1.9187 46 1 -1.1864 -5.9679 0.3296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200614726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:14 Heat of formation + Delta-G solvation = 3.856346 kcal Electronic energy + Delta-G solvation = -27878.516354 eV Core-core repulsion = 24156.337947 eV Total energy + Delta-G solvation = -3722.178407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07281 -39.15410 -37.20524 -35.75745 -34.75392 -33.03048 -32.63270 -32.43999 -30.81316 -28.81460 -26.92364 -26.39874 -24.64345 -23.80322 -22.77953 -21.82065 -21.02517 -20.06682 -18.60843 -17.76711 -17.52209 -17.21807 -16.75163 -16.42059 -16.27683 -15.73000 -14.97968 -14.76926 -14.49535 -14.25372 -13.96187 -13.64456 -13.55387 -13.37718 -13.04616 -12.84052 -12.65452 -12.45483 -12.35328 -12.21536 -11.95651 -11.54435 -11.34630 -11.15380 -10.96119 -10.64721 -10.48237 -10.45407 -10.26133 -9.94453 -9.89843 -9.44713 -9.40942 -9.11166 -8.78897 -8.56734 -8.34201 -6.87643 -5.99615 -2.97409 1.04270 1.78423 2.56476 2.92424 3.04420 3.58020 3.62605 3.79677 3.92726 4.34426 4.47327 4.58281 4.65848 4.70076 4.76213 4.78335 4.85743 4.91914 4.97176 5.17598 5.23139 5.32248 5.33973 5.40105 5.45673 5.52659 5.60059 5.69205 5.71870 5.73950 5.81622 5.95202 5.97134 6.07411 6.19123 6.20452 6.29075 6.52769 6.54324 6.57489 6.63888 6.66461 6.75953 7.26788 7.89332 7.97714 8.17564 8.87776 9.35756 10.22317 10.38603 11.49488 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003286 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.323337 B = 8518.573471 C = 9172.908619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.172 3.828 11 C 0.089 3.911 12 H 0.049 0.951 13 C 0.085 3.915 14 N -0.605 5.605 15 C 0.518 3.482 16 O -0.521 6.521 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.070 4.070 22 C -0.103 4.103 23 C -0.128 4.128 24 C 0.109 3.891 25 C -0.168 4.168 26 C 0.074 3.926 27 O -0.370 6.370 28 H 0.255 0.745 29 H 0.370 0.630 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -26.878 -0.220 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.382 5.382 10 C 0.044 3.956 11 C 0.028 3.972 12 H 0.067 0.933 13 C -0.039 4.039 14 N -0.339 5.339 15 C 0.305 3.695 16 O -0.396 6.396 17 C -0.069 4.069 18 C -0.165 4.165 19 C -0.124 4.124 20 C -0.170 4.170 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.147 4.147 24 C -0.014 4.014 25 C -0.206 4.206 26 C -0.003 4.003 27 O -0.288 6.288 28 H 0.066 0.934 29 H 0.204 0.796 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.010 -24.782 -0.586 24.809 hybrid contribution -0.135 -2.102 -0.079 2.107 sum -1.145 -26.883 -0.665 26.916 Atomic orbital electron populations 1.70850 1.06023 1.28453 1.53770 1.25764 0.97097 1.00897 1.00647 0.83232 0.74163 0.75595 0.75795 1.21078 1.22329 1.22321 1.20040 0.91973 0.85854 1.48149 0.91836 1.42204 1.05056 1.00456 1.90509 1.20539 0.92292 0.84243 0.98518 1.22275 0.92600 0.94271 0.88011 0.93313 1.22342 0.92448 0.85931 1.03161 1.47807 1.45195 1.34863 1.05996 1.20494 0.82530 0.83746 0.82739 1.90721 1.51031 1.57055 1.40775 1.19244 0.99493 0.92968 0.95196 1.22889 0.96432 0.97591 0.99588 1.21088 0.94191 0.99296 0.97816 1.20985 0.99429 1.01919 0.94642 1.21076 0.96197 0.95394 0.96179 1.21021 0.92332 0.99323 0.99414 1.22710 0.98810 1.01075 0.92070 1.22024 0.97335 0.94628 0.87402 1.22532 1.02692 0.96918 0.98485 1.22112 0.89846 0.89035 0.99312 1.86427 1.44879 1.54424 1.43064 0.93361 0.79635 0.94788 0.95601 0.89030 0.90084 0.87753 0.86005 0.86463 0.87150 0.86877 0.86459 0.86214 0.91562 0.89902 0.89989 0.89721 0.89328 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.65 13.70 55.49 0.76 -29.89 16 2 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16 3 Si 1.08 27.03 29.92 -169.99 -5.09 21.94 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.33 -9.89 9.99 -15.06 -0.15 -10.04 16 8 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.74 -20.27 5.49 -59.91 -0.33 -20.59 16 10 C 0.17 3.84 5.95 -4.05 -0.02 3.82 16 11 C 0.09 1.64 2.73 -25.79 -0.07 1.57 16 12 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 13 C 0.08 1.27 4.86 -3.83 -0.02 1.25 16 14 N -0.61 -7.58 2.19 -172.47 -0.38 -7.95 16 15 C 0.52 6.98 5.37 -10.99 -0.06 6.93 16 16 O -0.52 -8.96 13.10 5.55 0.07 -8.89 16 17 C -0.05 -0.48 2.09 -94.47 -0.20 -0.67 16 18 C -0.15 -1.17 6.82 -36.44 -0.25 -1.42 16 19 C -0.11 -0.92 9.58 -38.74 -0.37 -1.29 16 20 C -0.15 -1.59 8.53 -38.65 -0.33 -1.92 16 21 C -0.07 -0.80 7.35 -38.66 -0.28 -1.09 16 22 C -0.10 -1.11 9.09 -38.75 -0.35 -1.47 16 23 C -0.13 -1.33 8.78 -36.43 -0.32 -1.65 16 24 C 0.11 0.98 4.97 -3.19 -0.02 0.96 16 25 C -0.17 -1.63 5.78 -27.18 -0.16 -1.79 16 26 C 0.07 0.98 6.37 36.41 0.23 1.21 16 27 O -0.37 -6.74 9.18 -26.54 -0.24 -6.99 16 28 H 0.26 8.24 6.77 -40.82 -0.28 7.96 16 29 H 0.37 10.55 6.36 -40.82 -0.26 10.29 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.47 7.27 -51.93 -0.38 1.10 16 33 H 0.08 1.12 8.11 -51.92 -0.42 0.70 16 34 H 0.10 0.85 7.41 -51.93 -0.38 0.47 16 35 H 0.12 0.65 7.96 -52.49 -0.42 0.23 16 36 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.58 5.15 -51.93 -0.27 0.31 16 43 H 0.08 0.90 8.02 -51.92 -0.42 0.48 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.61 7.40 -51.93 -0.38 0.22 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -36.53 360.09 -9.30 -45.83 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.06 Total: 8.25 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.46 Total: -7.13 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.05 Total: -58.44 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.17 Total: -15.88 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -5.09 Total: 21.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.53 -9.30 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200614726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.688 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds