Wall clock time and date at job start Tue Mar 31 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46920 * 59.99505 * 11 10 9 13 13 C 1.54803 * 109.47177 * 179.97438 * 11 10 9 14 14 N 1.45127 * 109.54037 * 187.88905 * 13 11 10 15 15 C 1.34776 * 118.75705 * 90.71410 * 14 13 11 16 16 O 1.21283 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00097 * 180.02562 * 15 14 13 18 18 C 1.50284 * 109.46788 * 300.02883 * 17 15 14 19 19 C 1.32271 * 121.58484 * 303.35739 * 18 17 15 20 20 C 1.45204 * 123.04541 * 0.95304 * 19 18 17 21 21 C 1.32943 * 125.19556 * 319.59935 * 20 19 18 22 22 C 1.45191 * 125.19683 * 359.97438 * 21 20 19 23 23 C 1.32299 * 123.02537 * 40.43505 * 22 21 20 24 24 C 1.47507 * 122.48786 * 270.71293 * 14 13 11 25 25 C 1.53577 * 111.02305 * 41.62867 * 24 14 13 26 26 C 1.51530 * 109.58480 * 39.97747 * 25 24 14 27 27 O 1.38016 * 109.47215 * 300.00048 * 11 10 9 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 31 31 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 32 32 H 1.08999 * 109.46341 * 307.91099 * 13 11 10 33 33 H 1.09007 * 109.45703 * 67.87109 * 13 11 10 34 34 H 1.09003 * 109.46486 * 60.01458 * 17 15 14 35 35 H 1.07996 * 119.20277 * 123.32191 * 18 17 15 36 36 H 1.08006 * 118.46910 * 180.93654 * 19 18 17 37 37 H 1.07996 * 117.40260 * 139.58112 * 20 19 18 38 38 H 1.08000 * 117.40140 * 179.97438 * 21 20 19 39 39 H 1.08002 * 118.49016 * 220.41355 * 22 21 20 40 40 H 1.08003 * 119.20178 * 179.00222 * 23 22 21 41 41 H 1.08996 * 109.17066 * 281.22936 * 24 14 13 42 42 H 1.08998 * 109.16758 * 162.02413 * 24 14 13 43 43 H 1.09007 * 109.45349 * 279.94021 * 25 24 14 44 44 H 1.09002 * 109.45056 * 160.01420 * 25 24 14 45 45 H 1.09002 * 109.59231 * 148.81903 * 26 25 24 46 46 H 1.08998 * 109.59126 * 28.38616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.4333 -4.7601 -0.8969 13 6 1.8377 -6.1603 -0.0163 14 7 0.9063 -7.2576 -0.2023 15 6 0.6365 -7.6737 -1.4555 16 8 1.1683 -7.1326 -2.4018 17 6 -0.3268 -8.8104 -1.6811 18 6 0.1833 -10.0438 -0.9903 19 6 1.3816 -10.5389 -1.2522 20 6 2.2998 -9.9315 -2.1990 21 6 1.9559 -9.4074 -3.3714 22 6 0.6049 -9.3554 -3.9008 23 6 -0.4515 -9.0762 -3.1551 24 6 0.2438 -7.9348 0.9283 25 6 -0.2156 -6.9201 1.9857 26 6 -0.7751 -5.6901 1.3000 27 8 0.2750 -4.7488 1.1206 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.6812 -3.7125 -0.9040 31 1 2.6880 -3.7165 0.8760 32 1 2.5625 -6.1572 -0.8304 33 1 2.3589 -6.2834 0.9332 34 1 -1.3033 -8.5448 -1.2760 35 1 -0.4433 -10.5373 -0.2623 36 1 1.6914 -11.4366 -0.7376 37 1 3.3451 -9.9030 -1.9292 38 1 2.7441 -8.9869 -3.9782 39 1 0.4556 -9.5534 -4.9520 40 1 -1.4272 -9.0381 -3.6167 41 1 0.9425 -8.6358 1.3848 42 1 -0.6224 -8.4836 0.5589 43 1 0.6329 -6.6347 2.6077 44 1 -0.9874 -7.3705 2.6098 45 1 -1.5577 -5.2509 1.9187 46 1 -1.1864 -5.9679 0.3296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200614726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:14 Heat of formation + Delta-G solvation = -20.056752 kcal Electronic energy + Delta-G solvation = -27879.553304 eV Core-core repulsion = 24156.337947 eV Total energy + Delta-G solvation = -3723.215357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.06350 -40.30989 -38.15028 -37.14175 -36.42797 -34.48325 -33.38092 -33.23914 -32.57853 -30.23144 -28.11870 -27.29368 -26.25525 -24.70000 -24.50782 -23.04330 -22.36477 -20.99145 -19.50231 -19.41535 -18.58172 -18.25303 -17.92039 -17.60309 -17.50235 -16.91385 -16.41564 -15.77975 -15.72542 -15.48893 -15.18363 -15.10021 -14.89724 -14.71884 -14.36898 -14.01610 -13.74530 -13.44319 -13.31142 -13.19213 -12.96794 -12.78602 -12.71956 -12.59581 -12.29950 -12.04952 -11.87924 -11.84074 -11.58030 -11.31765 -11.20293 -10.98976 -10.89751 -10.61970 -10.18923 -9.66259 -9.15605 -9.14597 -8.43799 -5.36655 0.31089 1.05483 1.56597 1.59358 1.68337 1.84763 1.99401 2.25264 2.63251 2.70495 3.37954 3.51831 3.53418 3.77740 3.81011 3.88995 3.97618 3.99173 4.00450 4.07852 4.16904 4.18268 4.24840 4.31243 4.40283 4.44158 4.51717 4.62668 4.67882 4.75145 4.77248 4.84681 4.97089 4.98511 5.02431 5.07834 5.16113 5.49703 5.52146 5.53591 5.63360 5.81034 5.83183 5.90198 6.31235 6.45085 6.66621 7.05291 7.17911 7.95320 8.08360 9.08010 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003286 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.323337 B = 8518.573471 C = 9172.908619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.105 4.105 3 Si 1.133 2.867 4 H -0.290 1.290 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.341 4.341 8 H 0.068 0.932 9 N -0.751 5.751 10 C 0.169 3.831 11 C 0.108 3.892 12 H 0.018 0.982 13 C 0.100 3.900 14 N -0.604 5.604 15 C 0.510 3.490 16 O -0.569 6.569 17 C -0.048 4.048 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.153 4.153 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.137 4.137 24 C 0.103 3.897 25 C -0.157 4.157 26 C 0.063 3.937 27 O -0.400 6.400 28 H 0.241 0.759 29 H 0.361 0.639 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -29.093 1.578 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.295 4.295 3 Si 0.956 3.044 4 H -0.216 1.216 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.472 4.472 8 H 0.086 0.914 9 N -0.395 5.395 10 C 0.041 3.959 11 C 0.048 3.952 12 H 0.036 0.964 13 C -0.025 4.025 14 N -0.336 5.336 15 C 0.299 3.701 16 O -0.447 6.447 17 C -0.069 4.069 18 C -0.152 4.152 19 C -0.138 4.138 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.155 4.155 24 C -0.017 4.017 25 C -0.195 4.195 26 C -0.012 4.012 27 O -0.319 6.319 28 H 0.051 0.949 29 H 0.193 0.807 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.114 0.886 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.606 -27.075 1.240 27.151 hybrid contribution 0.042 -1.446 -0.632 1.579 sum -1.563 -28.521 0.608 28.571 Atomic orbital electron populations 1.70977 1.07190 1.27687 1.56118 1.27393 0.97136 1.04836 1.00184 0.82588 0.73355 0.71146 0.77262 1.21551 1.20050 1.20326 1.20450 0.92453 0.87084 1.47184 0.91429 1.42407 1.04827 1.01694 1.90590 1.20667 0.93142 0.83948 0.98098 1.21832 0.91743 0.94599 0.87053 0.96422 1.21964 0.92202 0.85136 1.03181 1.47915 1.44700 1.33910 1.07117 1.21260 0.82418 0.84155 0.82251 1.90706 1.52883 1.58758 1.42346 1.19388 0.99591 0.92476 0.95486 1.23158 0.96343 0.96226 0.99440 1.21305 0.94356 1.00276 0.97816 1.21212 1.00070 1.01132 0.94656 1.21123 0.96452 0.96819 0.96975 1.21201 0.92299 0.99988 1.00233 1.23023 0.99467 1.00359 0.92631 1.22373 0.98734 0.94497 0.86144 1.22458 1.03238 0.95292 0.98525 1.22438 0.88963 0.89947 0.99871 1.86347 1.46189 1.56939 1.42399 0.94859 0.80730 0.95272 0.95237 0.90807 0.88513 0.85139 0.81935 0.83956 0.87434 0.88412 0.85587 0.84375 0.89265 0.86953 0.91069 0.85855 0.88636 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.42 13.70 21.65 0.30 -64.12 16 2 C -0.10 -6.46 5.50 84.86 0.47 -6.00 16 3 Si 1.13 54.42 29.92 68.60 2.05 56.47 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.34 -20.84 9.99 84.03 0.84 -20.00 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -42.74 5.49 -343.47 -1.88 -44.63 16 10 C 0.17 7.79 5.95 86.38 0.51 8.30 16 11 C 0.11 4.12 2.73 31.21 0.09 4.21 16 12 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 13 C 0.10 2.99 4.86 87.25 0.42 3.41 16 14 N -0.60 -14.11 2.19 -817.95 -1.79 -15.90 16 15 C 0.51 13.25 5.37 87.66 0.47 13.72 16 16 O -0.57 -20.18 13.10 -3.04 -0.04 -20.22 16 17 C -0.05 -0.83 2.09 -13.29 -0.03 -0.86 16 18 C -0.13 -1.56 6.82 24.50 0.17 -1.40 16 19 C -0.12 -1.72 9.58 23.00 0.22 -1.49 16 20 C -0.15 -3.12 8.53 22.89 0.20 -2.92 16 21 C -0.10 -2.26 7.35 22.88 0.17 -2.09 16 22 C -0.12 -2.58 9.09 22.99 0.21 -2.37 16 23 C -0.14 -2.63 8.78 24.49 0.21 -2.41 16 24 C 0.10 1.43 4.97 86.38 0.43 1.86 16 25 C -0.16 -2.49 5.78 30.31 0.18 -2.31 16 26 C 0.06 1.60 6.37 71.50 0.46 2.05 16 27 O -0.40 -14.68 9.18 -117.87 -1.08 -15.76 16 28 H 0.24 16.16 6.77 -92.71 -0.63 15.53 16 29 H 0.36 21.52 6.36 -92.71 -0.59 20.93 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 2.47 7.27 -2.39 -0.02 2.45 16 33 H 0.10 2.57 8.11 -2.38 -0.02 2.55 16 34 H 0.13 1.56 7.41 -2.39 -0.02 1.54 16 35 H 0.16 0.64 7.96 -2.91 -0.02 0.62 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.11 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.10 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.93 5.15 -2.39 -0.01 0.92 16 43 H 0.07 1.34 8.02 -2.38 -0.02 1.32 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.04 1.11 7.40 -2.39 -0.02 1.09 16 Total: -1.00 -83.32 360.09 3.08 -80.25 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.52 Total: 32.22 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.01 Total: -8.31 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -3.38 Total: -124.65 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.12 Total: -35.98 kcal Atomic # 14 Polarization: 54.42 SS G_CDS: 2.05 Total: 56.47 kcal Total: -83.32 3.08 -80.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200614726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.190 kcal (2) G-P(sol) polarization free energy of solvation -83.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds