Wall clock time and date at job start Tue Mar 31 2020 12:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.53944 * 87.29354 * 139.20576 * 12 10 9 14 14 H 1.09001 * 113.66153 * 220.79061 * 13 12 10 15 15 N 1.46507 * 113.66706 * 89.83079 * 13 12 10 16 16 C 1.34773 * 119.99906 * 104.49993 * 15 13 12 17 17 O 1.21274 * 120.00230 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99507 * 180.02562 * 16 15 13 19 19 C 1.53001 * 109.46786 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.47058 * 180.02562 * 19 18 16 21 21 C 1.34510 * 125.79511 * 89.99378 * 20 19 18 22 22 C 1.41376 * 106.84104 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.84446 * 0.02562 * 22 21 20 24 24 O 1.34302 * 108.42028 * 359.73237 * 23 22 21 25 25 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 26 26 C 1.52909 * 121.14344 * 94.90673 * 25 10 9 27 27 C 1.53956 * 86.78392 * 209.37835 * 26 25 10 28 28 C 1.52909 * 121.14017 * 346.33906 * 25 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09004 * 113.57624 * 253.81123 * 12 10 9 32 32 H 1.09000 * 113.57682 * 24.51970 * 12 10 9 33 33 H 0.96997 * 119.99644 * 284.50563 * 15 13 12 34 34 H 1.09004 * 109.47082 * 299.99518 * 18 16 15 35 35 H 1.08996 * 109.47228 * 60.00012 * 18 16 15 36 36 H 1.09001 * 109.47194 * 299.99544 * 19 18 16 37 37 H 1.08996 * 109.47447 * 59.99876 * 19 18 16 38 38 H 1.07999 * 126.57734 * 359.97272 * 21 20 19 39 39 H 1.08009 * 126.57658 * 180.02562 * 22 21 20 40 40 H 1.08004 * 125.79404 * 180.02562 * 23 22 21 41 41 H 1.09005 * 113.66023 * 323.84452 * 26 25 10 42 42 H 1.08994 * 113.66410 * 94.90415 * 26 25 10 43 43 H 1.09003 * 113.57897 * 270.13399 * 27 26 25 44 44 H 1.08993 * 113.58234 * 139.34074 * 27 26 25 45 45 H 1.08998 * 113.66495 * 265.10005 * 28 25 10 46 46 H 1.09005 * 113.65961 * 36.15456 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 1.8395 -5.6909 0.5826 14 1 1.1201 -6.3720 1.0372 15 7 3.0983 -6.3488 0.2231 16 6 3.5036 -7.4427 0.8980 17 8 2.8262 -7.8827 1.8026 18 6 4.7987 -8.1190 0.5286 19 6 5.0219 -9.3264 1.4414 20 6 6.3173 -10.0024 1.0724 21 6 7.5268 -9.7204 1.5889 22 6 8.4516 -10.5878 0.9635 23 6 7.7520 -11.3476 0.1018 24 8 6.4589 -10.9925 0.1760 25 6 1.2512 -4.8341 -0.5416 26 6 1.3684 -5.2590 -2.0058 27 6 -0.0877 -5.7456 -1.8910 28 6 -0.2603 -4.7292 -0.7477 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.9743 -4.3279 1.9075 32 1 1.1728 -4.1117 1.9847 33 1 3.6399 -5.9970 -0.5006 34 1 4.7519 -8.4517 -0.5084 35 1 5.6228 -7.4157 0.6477 36 1 5.0685 -8.9941 2.4785 37 1 4.1978 -10.0296 1.3219 38 1 7.7489 -8.9745 2.3377 39 1 9.5157 -10.6319 1.1432 40 1 8.1601 -12.1165 -0.5376 41 1 1.4976 -4.4240 -2.6946 42 1 2.0863 -6.0621 -2.1721 43 1 -0.1765 -6.7832 -1.5690 44 1 -0.6930 -5.5211 -2.7692 45 1 -0.8436 -5.1091 0.0910 46 1 -0.5889 -3.7454 -1.0829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202439546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:25 Heat of formation + Delta-G solvation = 26.818961 kcal Electronic energy + Delta-G solvation = -26193.169339 eV Core-core repulsion = 22471.986665 eV Total energy + Delta-G solvation = -3721.182674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81187 -40.66654 -39.05508 -35.11628 -34.27963 -34.06758 -33.04485 -32.27097 -29.95473 -28.94890 -25.53463 -25.31294 -24.37820 -23.91730 -22.18923 -22.00463 -20.84538 -20.47221 -19.99704 -18.00189 -17.74254 -17.26903 -16.77456 -16.24579 -15.90560 -15.57384 -15.25526 -14.94824 -14.59048 -14.25876 -13.84522 -13.67158 -13.31456 -13.08253 -12.93100 -12.70728 -12.60948 -12.44666 -12.30972 -12.03545 -11.84344 -11.65446 -11.39265 -11.33283 -10.94955 -10.84379 -10.68083 -10.20712 -10.19133 -10.14920 -9.91696 -9.82803 -9.65647 -9.37855 -8.84052 -8.74529 -8.71503 -6.97402 -5.81053 -3.09377 1.45367 2.34748 2.63186 2.70489 3.21767 3.40588 3.46257 3.47787 4.36295 4.55753 4.62695 4.69651 4.73768 4.78567 4.85182 4.95671 4.97371 5.04530 5.20175 5.24257 5.28039 5.42714 5.45618 5.55846 5.63581 5.68155 5.73687 5.83755 5.89573 5.91193 6.00827 6.05022 6.13861 6.17804 6.20427 6.24406 6.35920 6.41452 6.50735 6.64424 6.76430 6.88387 6.93296 7.05557 7.58274 7.66675 8.25452 8.37916 9.49332 10.07352 10.42036 11.41304 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.002536 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.623637 B =11037.038827 C =12001.847626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.709 5.709 10 C 0.180 3.820 11 H 0.073 0.927 12 C -0.174 4.174 13 C 0.143 3.857 14 H 0.094 0.906 15 N -0.704 5.704 16 C 0.515 3.485 17 O -0.544 6.544 18 C -0.138 4.138 19 C -0.024 4.024 20 C -0.008 4.008 21 C -0.211 4.211 22 C -0.214 4.214 23 C -0.046 4.046 24 O -0.176 6.176 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.105 4.105 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.401 0.599 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.201 0.799 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 -21.090 -2.030 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.347 5.347 10 C 0.068 3.932 11 H 0.091 0.909 12 C -0.217 4.217 13 C 0.037 3.963 14 H 0.112 0.888 15 N -0.354 5.354 16 C 0.301 3.699 17 O -0.421 6.421 18 C -0.178 4.178 19 C -0.061 4.061 20 C -0.058 4.058 21 C -0.230 4.230 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.072 6.072 25 C -0.126 4.126 26 C -0.160 4.160 27 C -0.177 4.177 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.235 0.765 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.059 -21.332 -1.548 24.078 hybrid contribution 0.811 1.188 -0.233 1.457 sum 11.870 -20.144 -1.780 23.449 Atomic orbital electron populations 1.69654 1.05099 1.25745 1.57468 1.24749 0.95514 0.97726 1.02846 0.86202 0.78691 0.83879 0.77481 1.21737 1.21777 1.20776 1.19278 0.91018 0.84214 1.42890 0.91211 1.42372 1.05879 0.99614 1.86849 1.21382 0.94522 0.85014 0.92290 0.90893 1.24280 1.01820 0.95198 1.00379 1.21549 0.85176 0.93352 0.96191 0.88763 1.45638 1.23844 1.28836 1.37034 1.20473 0.87116 0.80185 0.82078 1.90706 1.56502 1.64692 1.30229 1.21670 0.96417 0.97902 1.01835 1.19845 0.90930 0.95044 1.00327 1.22502 0.97600 0.92020 0.93659 1.21651 0.92044 1.04152 1.05157 1.21853 1.00975 0.99742 1.00703 1.24026 0.80671 1.03098 1.03582 1.84033 1.28566 1.43968 1.50655 1.23437 0.97733 0.97851 0.93627 1.22637 0.96532 1.00331 0.96547 1.22824 0.97160 0.98729 0.99032 1.22466 0.93679 1.00189 0.97950 0.93453 0.77797 0.92371 0.89630 0.76453 0.88521 0.88285 0.87915 0.89200 0.83383 0.83522 0.78209 0.89631 0.92308 0.90978 0.91888 0.91841 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -16.99 5.32 -52.99 -0.28 -17.27 16 10 C 0.18 3.39 4.28 -67.48 -0.29 3.10 16 11 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 12 C -0.17 -3.06 7.68 -25.75 -0.20 -3.26 16 13 C 0.14 2.13 4.09 -67.38 -0.28 1.86 16 14 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 15 N -0.70 -8.60 4.87 -53.27 -0.26 -8.86 16 16 C 0.52 6.38 7.83 -10.99 -0.09 6.30 16 17 O -0.54 -8.78 15.62 5.56 0.09 -8.69 16 18 C -0.14 -1.21 5.68 -27.88 -0.16 -1.37 16 19 C -0.02 -0.22 5.04 -27.88 -0.14 -0.36 16 20 C -0.01 -0.07 6.57 -35.63 -0.23 -0.31 16 21 C -0.21 -1.92 10.81 -39.71 -0.43 -2.35 16 22 C -0.21 -1.74 10.91 -39.71 -0.43 -2.17 16 23 C -0.05 -0.36 12.09 29.41 0.36 0.00 16 24 O -0.18 -1.77 10.65 5.69 0.06 -1.70 16 25 C -0.12 -1.92 0.92 -154.61 -0.14 -2.06 16 26 C -0.12 -1.68 7.60 -26.28 -0.20 -1.88 16 27 C -0.14 -1.86 8.08 -25.75 -0.21 -2.07 16 28 C -0.10 -1.65 7.15 -26.28 -0.19 -1.84 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.39 9.82 6.17 -40.82 -0.25 9.57 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.40 4.09 8.28 -40.82 -0.34 3.75 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.20 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.76 6.99 -51.93 -0.36 1.40 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -32.08 380.85 -9.02 -41.10 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.19 Total: 13.03 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.87 Total: -13.54 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.18 Total: -52.93 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.15 Total: -10.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.08 -9.02 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202439546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.918 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds