Wall clock time and date at job start Tue Mar 31 2020 12:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99754 * 2 1 4 4 H 1.48495 * 109.46659 * 269.99738 * 3 2 1 5 5 H 1.48497 * 109.47332 * 29.99987 * 3 2 1 6 6 H 1.48497 * 109.46713 * 150.00113 * 3 2 1 7 7 C 1.38811 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00362 * 179.97438 * 9 7 2 11 11 H 1.09010 * 112.88124 * 26.84597 * 10 9 7 12 12 C 1.53942 * 113.66693 * 255.50511 * 10 9 7 13 13 C 1.53950 * 87.29580 * 220.69839 * 12 10 9 14 14 H 1.09002 * 113.66132 * 270.26122 * 13 12 10 15 15 N 1.46502 * 113.66464 * 139.29511 * 13 12 10 16 16 C 1.34773 * 119.99878 * 106.01567 * 15 13 12 17 17 O 1.21284 * 119.99934 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00206 * 180.02562 * 16 15 13 19 19 C 1.52999 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46819 * 179.97438 * 19 18 16 21 21 C 1.34521 * 125.78425 * 90.00017 * 20 19 18 22 22 C 1.41384 * 106.83920 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83965 * 0.02562 * 22 21 20 24 24 O 1.34300 * 125.79395 * 269.69591 * 20 19 18 25 25 C 1.52909 * 113.74742 * 158.26930 * 10 9 7 26 26 C 1.52909 * 121.13786 * 265.11278 * 25 10 9 27 27 C 1.53950 * 86.78305 * 100.81353 * 26 25 10 28 28 C 1.52904 * 121.13249 * 13.67164 * 25 10 9 29 29 H 0.97003 * 120.00149 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00019 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.58432 * 106.09297 * 12 10 9 32 32 H 1.09006 * 113.57722 * 335.29771 * 12 10 9 33 33 H 0.96999 * 120.00491 * 286.01463 * 15 13 12 34 34 H 1.08998 * 109.46735 * 299.99791 * 18 16 15 35 35 H 1.09000 * 109.47104 * 59.99658 * 18 16 15 36 36 H 1.08998 * 109.47293 * 299.99596 * 19 18 16 37 37 H 1.09000 * 109.47319 * 59.99936 * 19 18 16 38 38 H 1.07994 * 126.58574 * 359.96540 * 21 20 19 39 39 H 1.07994 * 126.58297 * 180.02562 * 22 21 20 40 40 H 1.08006 * 125.79161 * 180.02562 * 23 22 21 41 41 H 1.08996 * 113.65982 * 215.28325 * 26 25 10 42 42 H 1.08997 * 113.65741 * 346.34166 * 26 25 10 43 43 H 1.09003 * 113.58077 * 270.13602 * 27 26 25 44 44 H 1.09001 * 113.58090 * 139.33555 * 27 26 25 45 45 H 1.09001 * 113.66269 * 13.65152 * 28 25 10 46 46 H 1.08999 * 113.66649 * 144.71150 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0464 -3.5756 0.4543 12 6 2.0604 -4.3690 -1.3632 13 6 1.8554 -5.6867 -0.5939 14 1 2.7866 -6.1761 -0.3085 15 7 0.9049 -6.5995 -1.2340 16 6 1.3518 -7.7007 -1.8696 17 8 2.5409 -7.9357 -1.9121 18 6 0.3742 -8.6394 -2.5285 19 6 1.1361 -9.7989 -3.1734 20 6 0.1584 -10.7379 -3.8318 21 6 -0.2727 -10.6597 -5.1036 22 6 -1.1732 -11.7323 -5.2976 23 6 -1.2389 -12.4015 -4.1325 24 8 -0.4259 -11.7980 -3.2501 25 6 1.2404 -4.8399 0.5210 26 6 1.3238 -5.2773 1.9838 27 6 -0.0049 -4.5283 2.1931 28 6 -0.2757 -4.7386 0.6923 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 0.0016 31 1 3.0166 -4.3120 -1.8832 32 1 1.2161 -4.0986 -1.9975 33 1 -0.0461 -6.4114 -1.2003 34 1 -0.3159 -9.0291 -1.7802 35 1 -0.1855 -8.1023 -3.2942 36 1 1.8259 -9.4088 -3.9218 37 1 1.6961 -10.3361 -2.4080 38 1 0.0138 -9.9196 -5.8360 39 1 -1.7060 -11.9691 -6.2066 40 1 -1.8394 -13.2785 -3.9408 41 1 1.2448 -6.3554 2.1232 42 1 2.1628 -4.8391 2.5242 43 1 0.1233 -3.4820 2.4706 44 1 -0.7054 -5.0557 2.8406 45 1 -0.7144 -3.8701 0.2010 46 1 -0.8041 -5.6654 0.4687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202439547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:28 Heat of formation + Delta-G solvation = 26.456151 kcal Electronic energy + Delta-G solvation = -26177.999173 eV Core-core repulsion = 22456.800767 eV Total energy + Delta-G solvation = -3721.198406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.80514 -40.61801 -39.06883 -34.92747 -34.26541 -34.09327 -33.03999 -32.42733 -29.99763 -28.98303 -25.52676 -25.36776 -24.18404 -24.03613 -22.03262 -21.98259 -20.61000 -20.47056 -20.14393 -18.01299 -17.75557 -17.20733 -16.68089 -16.30473 -16.03667 -15.74671 -15.05711 -14.88276 -14.54812 -14.42918 -13.86156 -13.61253 -13.07854 -13.03320 -12.96994 -12.82868 -12.51835 -12.44358 -12.27836 -12.07782 -11.84109 -11.52676 -11.33159 -11.23268 -10.92663 -10.82131 -10.72026 -10.21291 -10.18397 -10.05564 -9.99787 -9.87005 -9.63225 -9.45397 -8.87181 -8.70372 -8.65677 -6.99086 -5.81957 -3.10215 1.46112 2.35436 2.66498 2.71774 3.31610 3.41247 3.47226 3.48139 4.38282 4.56095 4.64587 4.70961 4.78367 4.79326 4.87500 4.92595 4.98419 5.06720 5.22918 5.23890 5.30132 5.42902 5.46198 5.56514 5.67123 5.69348 5.74477 5.88145 5.89378 5.91418 5.96389 5.98619 6.05176 6.21568 6.25079 6.31352 6.38627 6.50437 6.58742 6.60946 6.84193 6.89070 6.91644 7.05944 7.63093 7.67832 8.28697 8.37049 9.48752 10.05309 10.40329 11.40366 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.002350 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.917793 B =11914.231201 C =12282.547215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.192 3.808 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.109 0.891 15 N -0.710 5.710 16 C 0.512 3.488 17 O -0.546 6.546 18 C -0.139 4.139 19 C -0.024 4.024 20 C -0.007 4.007 21 C -0.211 4.211 22 C -0.213 4.213 23 C -0.047 4.047 24 O -0.176 6.176 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.117 4.117 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.399 0.601 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.201 0.799 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 -22.411 -4.943 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.127 0.873 15 N -0.360 5.360 16 C 0.299 3.701 17 O -0.424 6.424 18 C -0.179 4.179 19 C -0.061 4.061 20 C -0.058 4.058 21 C -0.230 4.230 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.072 6.072 25 C -0.120 4.120 26 C -0.164 4.164 27 C -0.168 4.168 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.222 0.778 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.841 -22.463 -4.642 23.113 hybrid contribution -0.589 0.963 -0.418 1.204 sum -3.430 -21.499 -5.060 22.352 Atomic orbital electron populations 1.69651 1.05096 1.25743 1.57573 1.24741 0.95517 0.97718 1.02827 0.86195 0.78694 0.83808 0.77529 1.21727 1.21810 1.20726 1.19292 0.91119 0.84097 1.42788 0.91070 1.42342 1.05815 0.99464 1.86930 1.21059 0.94482 0.84360 0.92196 0.90238 1.24269 1.01667 0.95146 1.00517 1.22293 0.92962 0.88119 0.94109 0.87310 1.46002 1.10860 1.24030 1.55149 1.20502 0.89495 0.81596 0.78546 1.90699 1.17078 1.74552 1.60107 1.21680 0.98633 0.96079 1.01543 1.19844 0.93641 0.91664 1.00974 1.22515 0.99841 0.90352 0.93056 1.21654 1.02449 1.02148 0.96791 1.21852 1.03603 0.98244 0.99553 1.24029 0.97973 1.00702 0.88709 1.84030 1.47345 1.35345 1.40506 1.23551 0.97032 0.98059 0.93363 1.22709 0.98497 0.99156 0.96029 1.22735 0.96670 1.01572 0.95793 1.22435 0.94357 1.01250 0.97435 0.93478 0.77773 0.92170 0.90194 0.76544 0.88625 0.88394 0.87927 0.89228 0.83394 0.83523 0.78209 0.91008 0.91467 0.89138 0.92508 0.90268 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.71 -16.72 5.35 -52.99 -0.28 -17.00 16 10 C 0.19 3.65 4.35 -67.49 -0.29 3.36 16 11 H 0.08 1.54 8.12 -51.92 -0.42 1.12 16 12 C -0.17 -3.01 7.68 -25.75 -0.20 -3.21 16 13 C 0.13 1.93 4.10 -67.48 -0.28 1.65 16 14 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 15 N -0.71 -8.82 5.28 -53.37 -0.28 -9.10 16 16 C 0.51 6.47 7.83 -10.99 -0.09 6.38 16 17 O -0.55 -8.88 15.60 5.55 0.09 -8.79 16 18 C -0.14 -1.26 5.68 -27.88 -0.16 -1.42 16 19 C -0.02 -0.22 5.04 -27.88 -0.14 -0.37 16 20 C -0.01 -0.07 6.58 -35.62 -0.23 -0.31 16 21 C -0.21 -1.95 10.81 -39.70 -0.43 -2.38 16 22 C -0.21 -1.76 10.91 -39.70 -0.43 -2.19 16 23 C -0.05 -0.37 12.09 29.42 0.36 -0.01 16 24 O -0.18 -1.79 10.65 5.71 0.06 -1.73 16 25 C -0.12 -1.81 1.06 -154.71 -0.16 -1.97 16 26 C -0.13 -1.80 7.84 -26.28 -0.21 -2.01 16 27 C -0.13 -1.93 8.08 -25.75 -0.21 -2.14 16 28 C -0.12 -1.71 6.77 -26.28 -0.18 -1.89 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.39 9.59 5.87 -40.82 -0.24 9.35 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.40 4.21 6.99 -40.82 -0.29 3.92 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 46 H 0.07 0.84 7.00 -51.93 -0.36 0.48 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -31.59 378.66 -8.98 -40.57 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -7.07 Total: 13.46 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.90 Total: -13.56 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.16 Total: -52.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.15 Total: -10.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.59 -8.98 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202439547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.027 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds