Wall clock time and date at job start Tue Mar 31 2020 12:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99754 * 2 1 4 4 H 1.48495 * 109.46659 * 269.99738 * 3 2 1 5 5 H 1.48497 * 109.47332 * 29.99987 * 3 2 1 6 6 H 1.48497 * 109.46713 * 150.00113 * 3 2 1 7 7 C 1.38811 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00362 * 179.97438 * 9 7 2 11 11 H 1.09010 * 112.88124 * 26.84597 * 10 9 7 12 12 C 1.53942 * 113.66693 * 255.50511 * 10 9 7 13 13 C 1.53950 * 87.29580 * 220.69839 * 12 10 9 14 14 H 1.09002 * 113.66132 * 270.26122 * 13 12 10 15 15 N 1.46502 * 113.66464 * 139.29511 * 13 12 10 16 16 C 1.34773 * 119.99878 * 106.01567 * 15 13 12 17 17 O 1.21284 * 119.99934 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00206 * 180.02562 * 16 15 13 19 19 C 1.52999 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46819 * 179.97438 * 19 18 16 21 21 C 1.34521 * 125.78425 * 90.00017 * 20 19 18 22 22 C 1.41384 * 106.83920 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83965 * 0.02562 * 22 21 20 24 24 O 1.34300 * 125.79395 * 269.69591 * 20 19 18 25 25 C 1.52909 * 113.74742 * 158.26930 * 10 9 7 26 26 C 1.52909 * 121.13786 * 265.11278 * 25 10 9 27 27 C 1.53950 * 86.78305 * 100.81353 * 26 25 10 28 28 C 1.52904 * 121.13249 * 13.67164 * 25 10 9 29 29 H 0.97003 * 120.00149 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00019 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.58432 * 106.09297 * 12 10 9 32 32 H 1.09006 * 113.57722 * 335.29771 * 12 10 9 33 33 H 0.96999 * 120.00491 * 286.01463 * 15 13 12 34 34 H 1.08998 * 109.46735 * 299.99791 * 18 16 15 35 35 H 1.09000 * 109.47104 * 59.99658 * 18 16 15 36 36 H 1.08998 * 109.47293 * 299.99596 * 19 18 16 37 37 H 1.09000 * 109.47319 * 59.99936 * 19 18 16 38 38 H 1.07994 * 126.58574 * 359.96540 * 21 20 19 39 39 H 1.07994 * 126.58297 * 180.02562 * 22 21 20 40 40 H 1.08006 * 125.79161 * 180.02562 * 23 22 21 41 41 H 1.08996 * 113.65982 * 215.28325 * 26 25 10 42 42 H 1.08997 * 113.65741 * 346.34166 * 26 25 10 43 43 H 1.09003 * 113.58077 * 270.13602 * 27 26 25 44 44 H 1.09001 * 113.58090 * 139.33555 * 27 26 25 45 45 H 1.09001 * 113.66269 * 13.65152 * 28 25 10 46 46 H 1.08999 * 113.66649 * 144.71150 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0464 -3.5756 0.4543 12 6 2.0604 -4.3690 -1.3632 13 6 1.8554 -5.6867 -0.5939 14 1 2.7866 -6.1761 -0.3085 15 7 0.9049 -6.5995 -1.2340 16 6 1.3518 -7.7007 -1.8696 17 8 2.5409 -7.9357 -1.9121 18 6 0.3742 -8.6394 -2.5285 19 6 1.1361 -9.7989 -3.1734 20 6 0.1584 -10.7379 -3.8318 21 6 -0.2727 -10.6597 -5.1036 22 6 -1.1732 -11.7323 -5.2976 23 6 -1.2389 -12.4015 -4.1325 24 8 -0.4259 -11.7980 -3.2501 25 6 1.2404 -4.8399 0.5210 26 6 1.3238 -5.2773 1.9838 27 6 -0.0049 -4.5283 2.1931 28 6 -0.2757 -4.7386 0.6923 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 0.0016 31 1 3.0166 -4.3120 -1.8832 32 1 1.2161 -4.0986 -1.9975 33 1 -0.0461 -6.4114 -1.2003 34 1 -0.3159 -9.0291 -1.7802 35 1 -0.1855 -8.1023 -3.2942 36 1 1.8259 -9.4088 -3.9218 37 1 1.6961 -10.3361 -2.4080 38 1 0.0138 -9.9196 -5.8360 39 1 -1.7060 -11.9691 -6.2066 40 1 -1.8394 -13.2785 -3.9408 41 1 1.2448 -6.3554 2.1232 42 1 2.1628 -4.8391 2.5242 43 1 0.1233 -3.4820 2.4706 44 1 -0.7054 -5.0557 2.8406 45 1 -0.7144 -3.8701 0.2010 46 1 -0.8041 -5.6654 0.4687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202439547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:27 Heat of formation + Delta-G solvation = 7.506181 kcal Electronic energy + Delta-G solvation = -26178.820906 eV Core-core repulsion = 22456.800767 eV Total energy + Delta-G solvation = -3722.020139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.45002 -41.88970 -40.18643 -36.27738 -35.73978 -35.01814 -34.00373 -33.63812 -31.77759 -29.77047 -26.81297 -26.60647 -25.66186 -25.28927 -23.43871 -22.63168 -21.77771 -21.42652 -21.07657 -19.62964 -18.82092 -18.40531 -17.72817 -17.45390 -16.89163 -16.68081 -16.34698 -16.32254 -16.04576 -15.44594 -15.11071 -14.80791 -14.53490 -14.28090 -13.75401 -13.70214 -13.52716 -13.44582 -13.26904 -13.16576 -13.09587 -13.00156 -12.87129 -12.72977 -12.31873 -12.23284 -12.05229 -12.03637 -11.85106 -11.32403 -11.22614 -10.98152 -10.85694 -10.77142 -10.68864 -9.85173 -9.34852 -8.94509 -7.93928 -5.20592 0.81668 1.47531 1.48058 1.56354 1.66177 1.72772 2.05278 2.35118 2.57587 3.37116 3.50619 3.60154 3.66837 3.78438 3.91713 3.94545 4.02256 4.07153 4.12726 4.16961 4.19012 4.30424 4.36188 4.55769 4.60591 4.68573 4.76058 4.78616 4.80971 4.86863 4.97723 5.01278 5.03783 5.10538 5.10901 5.14786 5.22182 5.28157 5.38892 5.52078 5.53169 5.64273 5.64977 5.72487 6.25234 6.28826 6.62254 7.29147 7.36211 8.12483 8.37217 9.28984 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.002350 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.917793 B =11914.231201 C =12282.547215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.169 4.169 13 C 0.150 3.850 14 H 0.104 0.896 15 N -0.703 5.703 16 C 0.513 3.487 17 O -0.584 6.584 18 C -0.127 4.127 19 C -0.019 4.019 20 C -0.025 4.025 21 C -0.220 4.220 22 C -0.228 4.228 23 C -0.045 4.045 24 O -0.193 6.193 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.131 4.131 28 C -0.110 4.110 29 H 0.250 0.750 30 H 0.379 0.621 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.412 0.588 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.235 0.765 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 -24.622 -5.099 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.211 4.211 13 C 0.044 3.956 14 H 0.122 0.878 15 N -0.354 5.354 16 C 0.302 3.698 17 O -0.465 6.465 18 C -0.167 4.167 19 C -0.057 4.057 20 C -0.074 4.074 21 C -0.239 4.239 22 C -0.247 4.247 23 C -0.111 4.111 24 O -0.090 6.090 25 C -0.111 4.111 26 C -0.154 4.154 27 C -0.168 4.168 28 C -0.148 4.148 29 H 0.059 0.941 30 H 0.213 0.787 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.249 0.751 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.251 0.749 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.622 -24.715 -4.804 25.437 hybrid contribution -0.311 1.550 -0.412 1.633 sum -3.933 -23.165 -5.215 24.069 Atomic orbital electron populations 1.69791 1.06351 1.25916 1.59600 1.25461 0.96341 1.00726 1.03948 0.85227 0.77774 0.80031 0.77263 1.21724 1.22265 1.19676 1.19640 0.91401 0.85425 1.40783 0.90974 1.42434 1.05567 1.00256 1.87260 1.21326 0.94654 0.83927 0.93957 0.90986 1.24105 1.00950 0.96722 0.99334 1.21878 0.93306 0.87445 0.92948 0.87787 1.45872 1.11067 1.23566 1.54848 1.21094 0.89503 0.81527 0.77715 1.90691 1.19001 1.75383 1.61384 1.21647 0.97786 0.95113 1.02144 1.19739 0.93600 0.91770 1.00556 1.22509 1.00614 0.90888 0.93422 1.21932 1.02498 1.02665 0.96797 1.22180 1.03807 0.98104 1.00623 1.24775 0.97110 1.01058 0.88199 1.84020 1.47935 1.35626 1.41389 1.23310 0.97397 0.95800 0.94617 1.22711 0.97786 1.00536 0.94360 1.22647 0.97849 0.99862 0.96449 1.22473 0.93564 1.01837 0.96884 0.94084 0.78658 0.92830 0.91164 0.75096 0.86653 0.86600 0.88459 0.90213 0.82605 0.81683 0.74870 0.88325 0.92224 0.92777 0.89904 0.93041 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.89 13.06 21.65 0.28 -57.60 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -13.15 9.98 84.03 0.84 -12.31 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.72 -34.77 5.35 -321.56 -1.72 -36.49 16 10 C 0.17 6.63 4.35 45.28 0.20 6.83 16 11 H 0.07 2.85 8.12 -2.38 -0.02 2.83 16 12 C -0.17 -5.87 7.68 31.23 0.24 -5.63 16 13 C 0.15 4.27 4.10 45.28 0.19 4.45 16 14 H 0.10 3.16 7.50 -2.39 -0.02 3.14 16 15 N -0.70 -15.86 5.28 -441.14 -2.33 -18.19 16 16 C 0.51 11.97 7.83 87.66 0.69 12.65 16 17 O -0.58 -18.41 15.60 -3.04 -0.05 -18.45 16 18 C -0.13 -1.99 5.68 29.85 0.17 -1.82 16 19 C -0.02 -0.34 5.04 29.85 0.15 -0.19 16 20 C -0.02 -0.45 6.58 24.83 0.16 -0.28 16 21 C -0.22 -3.71 10.81 22.19 0.24 -3.47 16 22 C -0.23 -3.26 10.91 22.19 0.24 -3.02 16 23 C -0.04 -0.59 12.09 66.97 0.81 0.22 16 24 O -0.19 -3.57 10.65 -2.47 -0.03 -3.60 16 25 C -0.11 -3.24 1.06 -52.31 -0.06 -3.29 16 26 C -0.12 -3.09 7.84 30.88 0.24 -2.85 16 27 C -0.13 -3.71 8.08 31.23 0.25 -3.45 16 28 C -0.11 -3.04 6.77 30.88 0.21 -2.83 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.38 19.43 5.87 -92.71 -0.54 18.88 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.41 7.40 6.99 -92.71 -0.65 6.75 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.08 1.55 8.10 -2.39 -0.02 1.54 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.24 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.75 6.43 -2.39 -0.02 1.73 16 46 H 0.11 2.18 7.00 -2.39 -0.02 2.16 16 Total: -1.00 -69.70 378.66 3.02 -66.68 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.20 Total: 38.27 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 5.04 Total: -18.62 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.77 Total: -112.28 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.07 Total: -22.05 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.70 3.02 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202439547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.185 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds