Wall clock time and date at job start Tue Mar 31 2020 12:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46894 * 269.99866 * 3 2 1 5 5 H 1.48490 * 109.47138 * 30.00101 * 3 2 1 6 6 H 1.48507 * 109.46825 * 150.00274 * 3 2 1 7 7 C 1.38816 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99742 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.88443 * 333.16388 * 10 9 7 12 12 C 1.53952 * 113.65938 * 104.50674 * 10 9 7 13 13 C 1.53949 * 87.29323 * 89.73563 * 12 10 9 14 14 H 1.09001 * 113.66496 * 139.29785 * 13 12 10 15 15 N 1.46496 * 113.66566 * 270.26116 * 13 12 10 16 16 C 1.34777 * 120.00271 * 253.99074 * 15 13 12 17 17 O 1.21278 * 119.99854 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00161 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46912 * 179.97438 * 19 18 16 21 21 C 1.41382 * 126.57843 * 269.71600 * 20 19 18 22 22 C 1.34514 * 106.84139 * 179.83273 * 21 20 19 23 23 O 1.34303 * 108.41884 * 0.43371 * 22 21 20 24 24 C 1.34305 * 109.47588 * 359.71316 * 23 22 21 25 25 C 1.52910 * 86.88356 * 24.77899 * 13 12 10 26 26 C 1.52912 * 121.14073 * 209.32918 * 25 13 12 27 27 C 1.53957 * 86.78192 * 209.37640 * 26 25 13 28 28 C 1.52912 * 121.13567 * 100.77046 * 25 13 12 29 29 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00045 * 0.02562 * 9 7 2 31 31 H 1.09003 * 113.58221 * 335.13569 * 12 10 9 32 32 H 1.08999 * 113.57930 * 204.33871 * 12 10 9 33 33 H 0.97005 * 120.00266 * 73.98491 * 15 13 12 34 34 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 35 35 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 36 36 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 37 37 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 38 38 H 1.08004 * 126.57886 * 359.97438 * 21 20 19 39 39 H 1.07995 * 125.79094 * 180.10968 * 22 21 20 40 40 H 1.08002 * 125.78706 * 180.02562 * 24 23 22 41 41 H 1.08991 * 113.66206 * 323.85054 * 26 25 13 42 42 H 1.09004 * 113.65906 * 94.90849 * 26 25 13 43 43 H 1.08992 * 113.58042 * 270.13300 * 27 26 25 44 44 H 1.08997 * 113.64591 * 139.34709 * 27 26 25 45 45 H 1.09008 * 113.65651 * 265.09717 * 28 25 13 46 46 H 1.08999 * 113.66942 * 36.05644 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0459 -3.5759 -0.4539 12 6 2.0610 -4.3685 1.3646 13 6 0.7677 -5.0740 0.9177 14 1 0.7239 -6.1263 1.1985 15 7 -0.4522 -4.3406 1.2645 16 6 -1.2363 -4.7746 2.2711 17 8 -0.9322 -5.7725 2.8896 18 6 -2.4908 -4.0198 2.6282 19 6 -3.1914 -4.7183 3.7954 20 6 -4.4456 -3.9631 4.1529 21 6 -4.5572 -2.9110 5.0906 22 6 -5.8461 -2.5261 5.0930 23 8 -6.5192 -3.2916 4.2185 24 6 -5.6748 -4.1647 3.6453 25 6 1.2362 -4.8412 -0.5191 26 6 0.2327 -4.6711 -1.6603 27 6 1.3080 -5.2772 -2.5804 28 6 1.8881 -5.9621 -1.3296 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.9200 -3.6933 2.2087 32 1 2.9031 -5.0470 1.5008 33 1 -0.6956 -3.5426 0.7696 34 1 -3.1579 -3.9955 1.7665 35 1 -2.2323 -3.0010 2.9164 36 1 -3.4500 -5.7371 3.5069 37 1 -2.5245 -4.7429 4.6572 38 1 -3.7600 -2.4944 5.6885 39 1 -6.2691 -1.7390 5.6995 40 1 -5.9382 -4.9032 2.9025 41 1 -0.6563 -5.2932 -1.5574 42 1 -0.0005 -3.6306 -1.8863 43 1 1.9744 -4.5351 -3.0199 44 1 0.9105 -5.9768 -3.3156 45 1 2.9775 -5.9528 -1.2913 46 1 1.4654 -6.9473 -1.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202736665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:28 Heat of formation + Delta-G solvation = 28.108058 kcal Electronic energy + Delta-G solvation = -26847.081149 eV Core-core repulsion = 23125.954375 eV Total energy + Delta-G solvation = -3721.126774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56812 -40.57421 -38.78996 -35.30648 -34.74000 -33.63571 -32.27538 -31.30929 -29.89908 -29.08781 -25.57294 -25.20347 -24.15415 -24.08689 -22.30906 -21.62508 -20.52622 -20.11057 -19.78795 -18.07816 -17.52239 -17.03656 -16.50218 -15.95339 -15.71765 -15.32629 -15.16189 -14.77881 -14.56464 -14.41388 -13.89763 -13.49946 -13.15182 -12.94996 -12.82820 -12.60594 -12.34374 -12.18484 -12.07351 -11.89843 -11.82925 -11.49943 -11.34370 -10.94322 -10.88630 -10.84371 -10.68329 -10.22626 -10.08325 -9.84345 -9.73092 -9.71584 -9.43584 -9.34227 -8.90768 -8.56706 -8.43726 -7.08525 -5.89726 -3.18071 1.72770 2.55322 2.99609 3.10607 3.37362 3.43373 3.44418 3.55493 4.46766 4.73460 4.77219 4.79794 4.96894 5.00672 5.05572 5.16963 5.18516 5.28786 5.32710 5.37997 5.43006 5.65984 5.69893 5.74230 5.80030 5.85401 5.90681 5.99877 6.00374 6.03963 6.04348 6.15817 6.19317 6.25624 6.30489 6.36446 6.49354 6.50975 6.63036 6.70358 6.79809 6.96501 7.07590 7.14739 7.63131 7.97063 8.29823 8.62546 9.40752 9.95185 10.29198 11.32944 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.003959 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.273384 B = 7071.579324 C = 9172.838101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.191 3.809 11 H 0.064 0.936 12 C -0.185 4.185 13 C 0.138 3.862 14 H 0.089 0.911 15 N -0.697 5.697 16 C 0.516 3.484 17 O -0.557 6.557 18 C -0.136 4.136 19 C -0.032 4.032 20 C -0.174 4.174 21 C -0.206 4.206 22 C -0.046 4.046 23 O -0.180 6.180 24 C -0.044 4.044 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.107 4.107 29 H 0.257 0.743 30 H 0.380 0.620 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.408 0.592 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.148 0.852 39 H 0.200 0.800 40 H 0.201 0.799 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.445 -9.863 3.313 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.079 3.921 11 H 0.082 0.918 12 C -0.228 4.228 13 C 0.033 3.967 14 H 0.107 0.893 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.436 6.436 18 C -0.176 4.176 19 C -0.070 4.070 20 C -0.175 4.175 21 C -0.225 4.225 22 C -0.113 4.113 23 O -0.076 6.076 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.145 4.145 29 H 0.066 0.934 30 H 0.215 0.785 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.166 0.834 39 H 0.217 0.783 40 H 0.217 0.783 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.428 -10.344 3.679 13.256 hybrid contribution 0.274 1.476 -0.093 1.504 sum -7.154 -8.868 3.586 11.945 Atomic orbital electron populations 1.69618 1.05088 1.25936 1.57455 1.24716 0.95549 0.97699 1.02568 0.86169 0.78713 0.83636 0.77537 1.21661 1.21768 1.20724 1.19265 0.91182 0.83727 1.43091 0.90912 1.42099 1.05309 0.99347 1.87207 1.20927 0.94268 0.84654 0.92231 0.91827 1.24262 0.96432 1.00206 1.01867 1.21599 0.84434 0.95695 0.95018 0.89338 1.45772 1.23747 1.30315 1.35045 1.20622 0.84844 0.84751 0.79503 1.90643 1.74147 1.26739 1.52075 1.21647 0.94887 1.01128 0.99957 1.19674 0.91928 0.97458 0.97918 1.20530 0.95960 1.00429 1.00571 1.21817 0.97437 1.00185 1.03086 1.23993 0.91952 0.98807 0.96584 1.84051 1.38744 1.39413 1.45394 1.23873 0.88457 0.97013 1.01798 1.23566 0.98688 0.98659 0.92125 1.22568 0.96205 1.01982 0.95607 1.22748 0.98870 0.99634 0.95912 1.22513 0.99962 0.96556 0.95461 0.93361 0.78451 0.91005 0.90616 0.75460 0.89009 0.88341 0.90527 0.90276 0.83446 0.78295 0.78278 0.90966 0.90244 0.90097 0.92206 0.91394 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.22 13.06 55.49 0.72 -25.50 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.33 9.98 -15.06 -0.15 -6.48 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -16.12 4.77 -52.84 -0.25 -16.37 16 10 C 0.19 3.64 4.36 -67.33 -0.29 3.35 16 11 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 12 C -0.19 -3.32 7.68 -25.74 -0.20 -3.52 16 13 C 0.14 2.33 4.09 -67.48 -0.28 2.05 16 14 H 0.09 1.51 7.50 -51.93 -0.39 1.12 16 15 N -0.70 -11.87 4.93 -53.37 -0.26 -12.13 16 16 C 0.52 8.63 7.83 -10.98 -0.09 8.54 16 17 O -0.56 -10.70 15.60 5.56 0.09 -10.61 16 18 C -0.14 -1.87 5.68 -27.88 -0.16 -2.03 16 19 C -0.03 -0.41 5.02 -27.88 -0.14 -0.55 16 20 C -0.17 -2.10 5.42 -104.74 -0.57 -2.67 16 21 C -0.21 -2.40 10.87 -39.70 -0.43 -2.83 16 22 C -0.05 -0.47 12.09 29.42 0.36 -0.12 16 23 O -0.18 -2.08 10.65 5.71 0.06 -2.02 16 24 C -0.04 -0.48 12.01 29.41 0.35 -0.13 16 25 C -0.13 -2.03 0.78 -154.56 -0.12 -2.15 16 26 C -0.13 -1.94 7.22 -26.28 -0.19 -2.13 16 27 C -0.13 -1.81 8.08 -25.74 -0.21 -2.02 16 28 C -0.11 -1.41 7.84 -26.28 -0.21 -1.62 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.38 8.97 5.10 -40.82 -0.21 8.76 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.41 7.30 6.19 -40.82 -0.25 7.04 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.42 7.52 -51.93 -0.39 1.03 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -30.39 378.56 -8.50 -38.89 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -7.12 Total: 18.15 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.41 Total: -12.65 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.21 Total: -54.01 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.15 Total: -12.64 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.39 -8.50 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202736665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.994 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds