Wall clock time and date at job start Tue Mar 31 2020 12:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46894 * 269.99866 * 3 2 1 5 5 H 1.48490 * 109.47138 * 30.00101 * 3 2 1 6 6 H 1.48507 * 109.46825 * 150.00274 * 3 2 1 7 7 C 1.38816 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99742 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.88443 * 333.16388 * 10 9 7 12 12 C 1.53952 * 113.65938 * 104.50674 * 10 9 7 13 13 C 1.53949 * 87.29323 * 89.73563 * 12 10 9 14 14 H 1.09001 * 113.66496 * 139.29785 * 13 12 10 15 15 N 1.46496 * 113.66566 * 270.26116 * 13 12 10 16 16 C 1.34777 * 120.00271 * 253.99074 * 15 13 12 17 17 O 1.21278 * 119.99854 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00161 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46912 * 179.97438 * 19 18 16 21 21 C 1.41382 * 126.57843 * 269.71600 * 20 19 18 22 22 C 1.34514 * 106.84139 * 179.83273 * 21 20 19 23 23 O 1.34303 * 108.41884 * 0.43371 * 22 21 20 24 24 C 1.34305 * 109.47588 * 359.71316 * 23 22 21 25 25 C 1.52910 * 86.88356 * 24.77899 * 13 12 10 26 26 C 1.52912 * 121.14073 * 209.32918 * 25 13 12 27 27 C 1.53957 * 86.78192 * 209.37640 * 26 25 13 28 28 C 1.52912 * 121.13567 * 100.77046 * 25 13 12 29 29 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00045 * 0.02562 * 9 7 2 31 31 H 1.09003 * 113.58221 * 335.13569 * 12 10 9 32 32 H 1.08999 * 113.57930 * 204.33871 * 12 10 9 33 33 H 0.97005 * 120.00266 * 73.98491 * 15 13 12 34 34 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 35 35 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 36 36 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 37 37 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 38 38 H 1.08004 * 126.57886 * 359.97438 * 21 20 19 39 39 H 1.07995 * 125.79094 * 180.10968 * 22 21 20 40 40 H 1.08002 * 125.78706 * 180.02562 * 24 23 22 41 41 H 1.08991 * 113.66206 * 323.85054 * 26 25 13 42 42 H 1.09004 * 113.65906 * 94.90849 * 26 25 13 43 43 H 1.08992 * 113.58042 * 270.13300 * 27 26 25 44 44 H 1.08997 * 113.64591 * 139.34709 * 27 26 25 45 45 H 1.09008 * 113.65651 * 265.09717 * 28 25 13 46 46 H 1.08999 * 113.66942 * 36.05644 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0459 -3.5759 -0.4539 12 6 2.0610 -4.3685 1.3646 13 6 0.7677 -5.0740 0.9177 14 1 0.7239 -6.1263 1.1985 15 7 -0.4522 -4.3406 1.2645 16 6 -1.2363 -4.7746 2.2711 17 8 -0.9322 -5.7725 2.8896 18 6 -2.4908 -4.0198 2.6282 19 6 -3.1914 -4.7183 3.7954 20 6 -4.4456 -3.9631 4.1529 21 6 -4.5572 -2.9110 5.0906 22 6 -5.8461 -2.5261 5.0930 23 8 -6.5192 -3.2916 4.2185 24 6 -5.6748 -4.1647 3.6453 25 6 1.2362 -4.8412 -0.5191 26 6 0.2327 -4.6711 -1.6603 27 6 1.3080 -5.2772 -2.5804 28 6 1.8881 -5.9621 -1.3296 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.9200 -3.6933 2.2087 32 1 2.9031 -5.0470 1.5008 33 1 -0.6956 -3.5426 0.7696 34 1 -3.1579 -3.9955 1.7665 35 1 -2.2323 -3.0010 2.9164 36 1 -3.4500 -5.7371 3.5069 37 1 -2.5245 -4.7429 4.6572 38 1 -3.7600 -2.4944 5.6885 39 1 -6.2691 -1.7390 5.6995 40 1 -5.9382 -4.9032 2.9025 41 1 -0.6563 -5.2932 -1.5574 42 1 -0.0005 -3.6306 -1.8863 43 1 1.9744 -4.5351 -3.0199 44 1 0.9105 -5.9768 -3.3156 45 1 2.9775 -5.9528 -1.2913 46 1 1.4654 -6.9473 -1.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202736665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:28 Heat of formation + Delta-G solvation = 10.939932 kcal Electronic energy + Delta-G solvation = -26847.825615 eV Core-core repulsion = 23125.954375 eV Total energy + Delta-G solvation = -3721.871240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.41826 -41.93743 -40.13661 -36.66880 -35.81172 -35.34512 -33.79472 -32.38515 -31.63901 -30.03251 -26.77600 -26.70723 -25.60500 -25.38081 -23.83918 -22.45903 -21.78894 -21.23869 -20.96773 -19.67092 -18.72088 -18.48704 -17.72864 -17.09095 -16.79486 -16.67019 -16.56660 -16.17511 -15.95245 -15.54994 -15.34284 -14.87242 -14.64251 -14.53518 -13.83794 -13.66809 -13.44222 -13.42461 -13.26446 -13.12795 -13.08846 -12.93333 -12.82085 -12.67674 -12.52581 -12.16654 -11.93230 -11.90252 -11.82940 -11.28445 -11.17369 -10.91522 -10.82990 -10.64984 -10.50714 -9.83116 -9.41214 -8.99075 -7.95588 -5.22301 0.89881 1.48222 1.48822 1.56532 1.63434 1.65685 2.23030 2.35305 2.56015 3.37342 3.41614 3.62694 3.75336 3.83878 3.91253 3.98028 4.03444 4.04115 4.17728 4.20320 4.25566 4.30878 4.39317 4.58735 4.66293 4.68071 4.80587 4.82666 4.85901 4.89094 4.93098 5.00649 5.10998 5.13439 5.14465 5.22595 5.23585 5.26782 5.35893 5.52925 5.60015 5.60823 5.63047 5.73625 6.22875 6.27898 6.58086 7.24570 7.35272 8.08165 8.32704 9.27116 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.003959 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.273384 B = 7071.579324 C = 9172.838101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.708 5.708 10 C 0.177 3.823 11 H 0.061 0.939 12 C -0.180 4.180 13 C 0.138 3.862 14 H 0.093 0.907 15 N -0.699 5.699 16 C 0.514 3.486 17 O -0.582 6.582 18 C -0.128 4.128 19 C -0.021 4.021 20 C -0.195 4.195 21 C -0.233 4.233 22 C -0.040 4.040 23 O -0.189 6.189 24 C -0.041 4.041 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.094 4.094 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.403 0.597 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.150 0.850 39 H 0.234 0.766 40 H 0.228 0.772 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -11.057 2.725 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.067 3.933 11 H 0.079 0.921 12 C -0.221 4.221 13 C 0.033 3.967 14 H 0.111 0.889 15 N -0.349 5.349 16 C 0.302 3.698 17 O -0.463 6.463 18 C -0.168 4.168 19 C -0.059 4.059 20 C -0.197 4.197 21 C -0.252 4.252 22 C -0.107 4.107 23 O -0.084 6.084 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.165 4.165 27 C -0.165 4.165 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.167 0.833 39 H 0.250 0.750 40 H 0.244 0.756 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.570 -11.569 3.088 14.167 hybrid contribution 0.366 1.812 0.113 1.852 sum -7.204 -9.757 3.201 12.544 Atomic orbital electron populations 1.69745 1.06162 1.26025 1.59165 1.25380 0.96327 1.00429 1.03554 0.85254 0.77710 0.80148 0.77297 1.21512 1.22414 1.19994 1.19579 0.91436 0.85041 1.41400 0.90900 1.42167 1.05212 1.00038 1.87392 1.21118 0.94426 0.84326 0.93478 0.92093 1.24202 0.98218 1.00014 0.99704 1.21633 0.83839 0.95549 0.95692 0.88927 1.45859 1.23926 1.30067 1.35069 1.21090 0.85370 0.84468 0.78824 1.90622 1.74906 1.27971 1.52793 1.21632 0.93922 1.00108 1.01123 1.19522 0.91963 0.97695 0.96742 1.20566 0.96156 1.01223 1.01734 1.22043 0.98447 1.00876 1.03853 1.24625 0.91499 0.98687 0.95901 1.84071 1.39089 1.39640 1.45632 1.24388 0.87898 0.96915 1.01624 1.23446 0.98614 0.98134 0.91886 1.22571 0.97207 1.00571 0.96107 1.22707 0.97720 0.99645 0.96392 1.22548 1.00673 0.96281 0.93680 0.93970 0.79017 0.94095 0.88154 0.76006 0.87174 0.89286 0.90077 0.91832 0.83264 0.75008 0.75558 0.89614 0.93364 0.91178 0.89749 0.90250 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.09 13.06 21.65 0.28 -54.81 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -12.87 9.98 84.03 0.84 -12.03 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.71 -33.18 4.77 -321.10 -1.53 -34.71 16 10 C 0.18 6.69 4.36 45.38 0.20 6.89 16 11 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 12 C -0.18 -6.36 7.68 31.23 0.24 -6.12 16 13 C 0.14 4.55 4.09 45.28 0.19 4.74 16 14 H 0.09 3.02 7.50 -2.39 -0.02 3.00 16 15 N -0.70 -23.89 4.93 -441.16 -2.17 -26.06 16 16 C 0.51 17.25 7.83 87.66 0.69 17.93 16 17 O -0.58 -22.32 15.60 -3.02 -0.05 -22.37 16 18 C -0.13 -3.54 5.68 29.85 0.17 -3.37 16 19 C -0.02 -0.54 5.02 29.85 0.15 -0.39 16 20 C -0.20 -4.65 5.42 -19.94 -0.11 -4.75 16 21 C -0.23 -5.35 10.87 22.19 0.24 -5.11 16 22 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 23 O -0.19 -4.06 10.65 -2.50 -0.03 -4.09 16 24 C -0.04 -0.84 12.01 66.97 0.80 -0.04 16 25 C -0.12 -3.60 0.78 -52.21 -0.04 -3.64 16 26 C -0.13 -3.75 7.22 30.89 0.22 -3.52 16 27 C -0.13 -3.12 8.08 31.23 0.25 -2.86 16 28 C -0.09 -2.18 7.84 30.89 0.24 -1.94 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.38 18.18 5.10 -92.71 -0.47 17.70 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.40 14.73 6.19 -92.70 -0.57 14.15 16 34 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 37 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.23 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.23 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.74 7.52 -2.38 -0.02 1.72 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.74 378.56 3.83 -61.91 By element: Atomic # 1 Polarization: 50.57 SS G_CDS: -0.06 Total: 50.51 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.36 Total: -17.21 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.42 Total: -115.58 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.07 Total: -26.46 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.74 3.83 -61.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202736665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.851 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds