Wall clock time and date at job start Tue Mar 31 2020 12:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09003 * 113.74545 * 139.21691 * 13 12 10 15 15 N 1.46501 * 113.66461 * 270.26059 * 13 12 10 16 16 C 1.34776 * 120.00046 * 252.18692 * 15 13 12 17 17 O 1.21278 * 119.99818 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99969 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.46866 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.46866 * 180.02562 * 19 18 16 21 21 C 1.41382 * 126.57653 * 269.71239 * 20 19 18 22 22 C 1.34520 * 106.83858 * 179.83289 * 21 20 19 23 23 O 1.34307 * 108.41769 * 0.43386 * 22 21 20 24 24 C 1.34302 * 109.47359 * 359.71898 * 23 22 21 25 25 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 26 26 C 1.52908 * 121.13642 * 13.64835 * 25 10 9 27 27 C 1.53946 * 86.78542 * 209.38235 * 26 25 10 28 28 C 1.52910 * 121.13509 * 265.09062 * 25 10 9 29 29 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 32 32 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 33 33 H 0.96994 * 119.99935 * 72.18847 * 15 13 12 34 34 H 1.08999 * 109.46640 * 300.00124 * 18 16 15 35 35 H 1.08994 * 109.46820 * 60.00003 * 18 16 15 36 36 H 1.08991 * 109.47712 * 300.00256 * 19 18 16 37 37 H 1.09006 * 109.46903 * 60.00482 * 19 18 16 38 38 H 1.07994 * 126.58522 * 0.02562 * 21 20 19 39 39 H 1.08000 * 125.79142 * 180.11615 * 22 21 20 40 40 H 1.08008 * 125.78834 * 180.02562 * 24 23 22 41 41 H 1.09002 * 113.66478 * 323.85928 * 26 25 10 42 42 H 1.09008 * 113.65934 * 94.91137 * 26 25 10 43 43 H 1.08996 * 113.58314 * 270.13495 * 27 26 25 44 44 H 1.08999 * 113.65166 * 139.34935 * 27 26 25 45 45 H 1.09004 * 113.66092 * 265.08702 * 28 25 10 46 46 H 1.08994 * 113.66382 * 36.05415 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5290 -3.2988 -0.3987 12 6 4.7895 -2.7873 1.3504 13 6 5.9981 -3.2907 0.5405 14 1 6.9606 -3.0025 0.9634 15 7 5.9276 -4.7144 0.2026 16 6 6.7375 -5.5952 0.8229 17 8 7.5243 -5.2091 1.6612 18 6 6.6646 -7.0599 0.4756 19 6 7.6816 -7.8345 1.3162 20 6 7.6091 -9.2991 0.9685 21 6 6.7891 -10.2718 1.5852 22 6 7.0374 -11.4400 0.9660 23 8 7.9660 -11.2293 0.0189 24 6 8.3164 -9.9328 0.0160 25 6 5.5204 -2.3690 -0.5822 26 6 6.1796 -1.0108 -0.8246 27 6 6.9438 -1.6849 -1.9786 28 6 5.7918 -2.7038 -2.0493 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 5.0041 -1.9021 1.9492 32 1 4.2877 -3.5712 1.9175 33 1 5.2981 -5.0232 -0.4676 34 1 5.6617 -7.4329 0.6832 35 1 6.8906 -7.1941 -0.5821 36 1 8.6843 -7.4613 1.1084 37 1 7.4560 -7.7002 2.3742 38 1 6.0942 -10.1079 2.3954 39 1 6.5728 -12.3876 1.1954 40 1 9.0426 -9.4762 -0.6403 41 1 5.4835 -0.2389 -1.1528 42 1 6.8218 -0.6840 -0.0067 43 1 7.8948 -2.1225 -1.6750 44 1 7.0301 -1.0618 -2.8688 45 1 6.1241 -3.7294 -2.2098 46 1 4.9859 -2.4092 -2.7215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202736666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:31 Heat of formation + Delta-G solvation = 29.971710 kcal Electronic energy + Delta-G solvation = -26237.980055 eV Core-core repulsion = 22516.934094 eV Total energy + Delta-G solvation = -3721.045960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.82241 -40.77930 -39.10181 -35.31948 -34.98278 -34.17925 -32.42159 -31.60262 -30.39639 -29.35218 -25.68720 -25.54656 -24.44058 -23.98670 -21.95301 -21.87378 -20.88418 -20.39389 -20.04528 -18.27563 -17.83435 -17.54317 -16.81290 -16.20752 -15.89679 -15.61767 -15.23914 -15.06744 -14.83801 -14.55239 -13.94094 -13.81148 -13.23018 -13.08030 -12.78609 -12.71956 -12.62472 -12.52622 -12.22987 -12.14885 -12.11004 -11.98397 -11.52393 -11.16103 -11.05903 -10.98107 -10.78618 -10.31453 -10.15051 -10.04457 -9.95557 -9.74844 -9.67967 -9.45513 -8.88522 -8.82644 -8.80664 -7.28973 -5.81775 -3.17048 1.47815 2.28589 2.63972 2.86304 3.18099 3.33621 3.36210 3.42090 4.46937 4.51904 4.54492 4.61333 4.68603 4.80250 4.84345 4.89447 4.99028 5.02421 5.05612 5.13857 5.33800 5.37123 5.43616 5.49426 5.50371 5.61935 5.77170 5.77959 5.87758 5.89661 5.91951 5.97655 5.98626 6.03887 6.06343 6.18711 6.23379 6.25407 6.42799 6.55980 6.59138 6.77163 6.82852 6.92876 7.56704 7.94654 8.25499 8.38186 9.15980 9.88633 10.08816 11.36502 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.002509 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.251917 B =11156.560290 C =11804.221808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.733 5.733 10 C 0.187 3.813 11 H 0.083 0.917 12 C -0.175 4.175 13 C 0.144 3.856 14 H 0.096 0.904 15 N -0.706 5.706 16 C 0.514 3.486 17 O -0.545 6.545 18 C -0.135 4.135 19 C -0.034 4.034 20 C -0.177 4.177 21 C -0.208 4.208 22 C -0.044 4.044 23 O -0.179 6.179 24 C -0.042 4.042 25 C -0.129 4.129 26 C -0.109 4.109 27 C -0.138 4.138 28 C -0.123 4.123 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.201 0.799 40 H 0.201 0.799 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.161 -18.426 -2.036 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.373 5.373 10 C 0.075 3.925 11 H 0.101 0.899 12 C -0.217 4.217 13 C 0.038 3.962 14 H 0.114 0.886 15 N -0.355 5.355 16 C 0.300 3.700 17 O -0.422 6.422 18 C -0.175 4.175 19 C -0.072 4.072 20 C -0.179 4.179 21 C -0.227 4.227 22 C -0.112 4.112 23 O -0.075 6.075 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.147 4.147 27 C -0.176 4.176 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.197 0.803 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.218 0.782 40 H 0.218 0.782 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.552 -18.398 -1.634 25.480 hybrid contribution -0.028 1.245 -0.082 1.248 sum 17.523 -17.153 -1.716 24.581 Atomic orbital electron populations 1.69692 1.05114 1.25879 1.57290 1.24677 0.95226 0.97192 1.01911 0.86612 0.79368 0.85131 0.77842 1.20998 1.21653 1.20210 1.19119 0.80654 0.94715 1.43194 0.89186 1.42713 1.03942 1.02031 1.88588 1.21372 0.88813 0.89980 0.92327 0.89902 1.24256 0.96584 1.00847 1.00025 1.21465 0.99732 0.79077 0.95889 0.88553 1.45648 1.40110 1.07169 1.42610 1.20656 0.80026 0.88212 0.81064 1.90695 1.38287 1.80342 1.32918 1.21655 1.02262 0.91472 1.02091 1.19683 0.99501 0.87481 1.00521 1.20519 1.00664 0.97198 0.99474 1.21817 1.04187 0.92660 1.04077 1.24036 0.94563 1.00608 0.91945 1.84070 1.47273 1.27890 1.48265 1.23906 1.03420 0.81014 1.02580 1.23467 0.98965 0.96668 0.94035 1.22471 0.98510 0.95563 0.98172 1.22811 0.97498 0.98574 0.98708 1.22642 0.98438 0.98624 0.96299 0.93012 0.80256 0.89752 0.91886 0.76397 0.88665 0.88930 0.90335 0.90087 0.83404 0.78217 0.78229 0.89289 0.91651 0.90764 0.91820 0.92025 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.25 -6.76 10.45 -15.06 -0.16 -6.92 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.73 -16.61 5.10 -52.99 -0.27 -16.88 16 10 C 0.19 3.37 4.27 -67.48 -0.29 3.09 16 11 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 12 C -0.17 -2.94 7.68 -25.75 -0.20 -3.14 16 13 C 0.14 2.06 4.12 -67.48 -0.28 1.78 16 14 H 0.10 1.49 7.46 -51.93 -0.39 1.10 16 15 N -0.71 -8.38 4.81 -53.37 -0.26 -8.63 16 16 C 0.51 6.28 7.83 -10.98 -0.09 6.20 16 17 O -0.55 -8.74 15.58 5.56 0.09 -8.66 16 18 C -0.13 -1.17 5.68 -27.88 -0.16 -1.33 16 19 C -0.03 -0.31 5.02 -27.88 -0.14 -0.45 16 20 C -0.18 -1.55 5.42 -104.75 -0.57 -2.11 16 21 C -0.21 -1.72 10.87 -39.70 -0.43 -2.15 16 22 C -0.04 -0.32 12.09 29.42 0.36 0.03 16 23 O -0.18 -1.56 10.65 5.70 0.06 -1.50 16 24 C -0.04 -0.33 12.01 29.41 0.35 0.03 16 25 C -0.13 -1.88 0.92 -154.71 -0.14 -2.03 16 26 C -0.11 -1.58 7.15 -26.29 -0.19 -1.77 16 27 C -0.14 -1.70 8.08 -25.75 -0.21 -1.91 16 28 C -0.12 -1.57 7.62 -26.28 -0.20 -1.77 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.36 8.15 4.09 -40.82 -0.17 7.98 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 3.99 8.42 -40.82 -0.34 3.65 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.09 1.43 7.03 -51.93 -0.36 1.07 16 42 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.69 7.58 -51.93 -0.39 0.29 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -33.45 377.86 -8.22 -41.66 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.16 Total: 11.78 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.43 Total: -12.38 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.25 Total: -53.61 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.15 Total: -10.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.45 -8.22 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202736666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.635 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds