Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09003 * 113.74545 * 139.21691 * 13 12 10 15 15 N 1.46501 * 113.66461 * 270.26059 * 13 12 10 16 16 C 1.34776 * 120.00046 * 252.18692 * 15 13 12 17 17 O 1.21278 * 119.99818 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99969 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.46866 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.46866 * 180.02562 * 19 18 16 21 21 C 1.41382 * 126.57653 * 269.71239 * 20 19 18 22 22 C 1.34520 * 106.83858 * 179.83289 * 21 20 19 23 23 O 1.34307 * 108.41769 * 0.43386 * 22 21 20 24 24 C 1.34302 * 109.47359 * 359.71898 * 23 22 21 25 25 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 26 26 C 1.52908 * 121.13642 * 13.64835 * 25 10 9 27 27 C 1.53946 * 86.78542 * 209.38235 * 26 25 10 28 28 C 1.52910 * 121.13509 * 265.09062 * 25 10 9 29 29 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 32 32 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 33 33 H 0.96994 * 119.99935 * 72.18847 * 15 13 12 34 34 H 1.08999 * 109.46640 * 300.00124 * 18 16 15 35 35 H 1.08994 * 109.46820 * 60.00003 * 18 16 15 36 36 H 1.08991 * 109.47712 * 300.00256 * 19 18 16 37 37 H 1.09006 * 109.46903 * 60.00482 * 19 18 16 38 38 H 1.07994 * 126.58522 * 0.02562 * 21 20 19 39 39 H 1.08000 * 125.79142 * 180.11615 * 22 21 20 40 40 H 1.08008 * 125.78834 * 180.02562 * 24 23 22 41 41 H 1.09002 * 113.66478 * 323.85928 * 26 25 10 42 42 H 1.09008 * 113.65934 * 94.91137 * 26 25 10 43 43 H 1.08996 * 113.58314 * 270.13495 * 27 26 25 44 44 H 1.08999 * 113.65166 * 139.34935 * 27 26 25 45 45 H 1.09004 * 113.66092 * 265.08702 * 28 25 10 46 46 H 1.08994 * 113.66382 * 36.05415 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5290 -3.2988 -0.3987 12 6 4.7895 -2.7873 1.3504 13 6 5.9981 -3.2907 0.5405 14 1 6.9606 -3.0025 0.9634 15 7 5.9276 -4.7144 0.2026 16 6 6.7375 -5.5952 0.8229 17 8 7.5243 -5.2091 1.6612 18 6 6.6646 -7.0599 0.4756 19 6 7.6816 -7.8345 1.3162 20 6 7.6091 -9.2991 0.9685 21 6 6.7891 -10.2718 1.5852 22 6 7.0374 -11.4400 0.9660 23 8 7.9660 -11.2293 0.0189 24 6 8.3164 -9.9328 0.0160 25 6 5.5204 -2.3690 -0.5822 26 6 6.1796 -1.0108 -0.8246 27 6 6.9438 -1.6849 -1.9786 28 6 5.7918 -2.7038 -2.0493 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 5.0041 -1.9021 1.9492 32 1 4.2877 -3.5712 1.9175 33 1 5.2981 -5.0232 -0.4676 34 1 5.6617 -7.4329 0.6832 35 1 6.8906 -7.1941 -0.5821 36 1 8.6843 -7.4613 1.1084 37 1 7.4560 -7.7002 2.3742 38 1 6.0942 -10.1079 2.3954 39 1 6.5728 -12.3876 1.1954 40 1 9.0426 -9.4762 -0.6403 41 1 5.4835 -0.2389 -1.1528 42 1 6.8218 -0.6840 -0.0067 43 1 7.8948 -2.1225 -1.6750 44 1 7.0301 -1.0618 -2.8688 45 1 6.1241 -3.7294 -2.2098 46 1 4.9859 -2.4092 -2.7215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202736666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = 8.865396 kcal Electronic energy + Delta-G solvation = -26238.895293 eV Core-core repulsion = 22516.934094 eV Total energy + Delta-G solvation = -3721.961199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.40160 -41.98519 -40.17143 -36.54390 -35.91718 -35.61819 -33.93885 -32.58904 -31.94719 -30.00611 -26.85581 -26.77294 -25.67572 -25.24844 -23.51216 -22.43829 -22.00507 -21.27885 -20.91534 -20.01043 -19.00492 -18.49212 -17.73579 -17.10415 -16.79903 -16.68734 -16.59601 -16.42182 -15.92990 -15.49603 -15.27572 -14.74554 -14.68845 -14.29779 -14.06703 -13.96561 -13.64309 -13.49930 -13.37162 -13.20403 -13.07821 -12.92950 -12.91785 -12.74104 -12.55101 -12.11519 -12.05480 -11.86174 -11.85668 -11.34320 -11.24692 -10.94040 -10.85975 -10.70940 -10.50987 -9.95367 -9.39375 -9.24732 -8.02916 -5.34921 0.91856 1.35983 1.38550 1.45695 1.66091 1.67202 2.18306 2.37777 2.47026 3.26856 3.42016 3.51022 3.69621 3.76526 3.90298 3.92967 3.95962 3.98828 4.04435 4.21741 4.22830 4.31328 4.42356 4.55895 4.60613 4.67966 4.74376 4.82004 4.84562 4.89423 4.92712 5.00745 5.05653 5.08307 5.10683 5.15733 5.24082 5.26737 5.38477 5.47339 5.59003 5.63319 5.66671 5.77978 6.22586 6.25694 6.60225 7.07807 7.28881 7.85524 8.04339 9.18692 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.002509 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.251917 B =11156.560290 C =11804.221808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.228 4.228 8 H 0.059 0.941 9 N -0.737 5.737 10 C 0.170 3.830 11 H 0.079 0.921 12 C -0.175 4.175 13 C 0.163 3.837 14 H 0.092 0.908 15 N -0.698 5.698 16 C 0.515 3.485 17 O -0.584 6.584 18 C -0.124 4.124 19 C -0.028 4.028 20 C -0.194 4.194 21 C -0.230 4.230 22 C -0.042 4.042 23 O -0.191 6.191 24 C -0.042 4.042 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.257 0.743 30 H 0.366 0.634 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.153 0.847 39 H 0.231 0.769 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.621 -19.430 -3.248 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.179 1.179 7 C -0.359 4.359 8 H 0.077 0.923 9 N -0.378 5.378 10 C 0.061 3.939 11 H 0.097 0.903 12 C -0.217 4.217 13 C 0.056 3.944 14 H 0.110 0.890 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.164 4.164 19 C -0.066 4.066 20 C -0.195 4.195 21 C -0.249 4.249 22 C -0.109 4.109 23 O -0.087 6.087 24 C -0.110 4.110 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.247 0.753 40 H 0.242 0.758 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.061 -19.455 -2.863 28.091 hybrid contribution -0.807 1.418 0.348 1.668 sum 19.253 -18.037 -2.515 26.502 Atomic orbital electron populations 1.69869 1.07062 1.26549 1.59938 1.25452 0.96041 1.01034 1.02967 0.85525 0.78670 0.80120 0.78222 1.20138 1.22499 1.17892 1.19098 0.82732 0.93401 1.40688 0.92283 1.42697 1.02283 1.03912 1.88871 1.21673 0.90239 0.88094 0.93911 0.90256 1.24155 0.97828 1.00485 0.99242 1.21128 0.98106 0.80420 0.94741 0.88995 1.45589 1.40362 1.06137 1.42795 1.21269 0.78953 0.89442 0.80016 1.90685 1.39948 1.81163 1.34635 1.21649 1.02795 0.88439 1.03473 1.19557 0.99405 0.88084 0.99519 1.20554 1.01639 0.96946 1.00373 1.22046 1.04867 0.93212 1.04803 1.24639 0.93754 1.01550 0.90975 1.84084 1.47647 1.28281 1.48695 1.24392 1.03332 0.80713 1.02524 1.23320 0.95731 0.97481 0.95506 1.22545 0.98738 0.94932 0.99593 1.22757 0.97461 0.97874 0.98052 1.22628 0.98452 1.00296 0.94114 0.93431 0.79919 0.90790 0.92548 0.75001 0.87523 0.86271 0.90696 0.91924 0.82920 0.75263 0.75789 0.90914 0.91041 0.89357 0.90686 0.89737 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.75 13.97 21.65 0.30 -62.44 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.95 45.20 27.73 68.60 1.90 47.10 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 7 C -0.23 -12.73 10.45 84.03 0.88 -11.85 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.74 -33.24 5.10 -321.55 -1.64 -34.88 16 10 C 0.17 6.06 4.27 45.28 0.19 6.25 16 11 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 12 C -0.18 -5.81 7.68 31.23 0.24 -5.57 16 13 C 0.16 4.38 4.12 45.28 0.19 4.57 16 14 H 0.09 2.67 7.46 -2.39 -0.02 2.65 16 15 N -0.70 -15.09 4.81 -441.15 -2.12 -17.21 16 16 C 0.51 11.64 7.83 87.66 0.69 12.32 16 17 O -0.58 -18.15 15.58 -3.02 -0.05 -18.20 16 18 C -0.12 -1.86 5.68 29.85 0.17 -1.69 16 19 C -0.03 -0.47 5.02 29.85 0.15 -0.32 16 20 C -0.19 -3.08 5.42 -19.94 -0.11 -3.19 16 21 C -0.23 -3.50 10.87 22.19 0.24 -3.25 16 22 C -0.04 -0.53 12.09 66.97 0.81 0.27 16 23 O -0.19 -2.94 10.65 -2.51 -0.03 -2.97 16 24 C -0.04 -0.58 12.01 66.96 0.80 0.23 16 25 C -0.12 -3.24 0.92 -52.31 -0.05 -3.28 16 26 C -0.12 -3.22 7.15 30.88 0.22 -3.00 16 27 C -0.12 -2.63 8.08 31.23 0.25 -2.38 16 28 C -0.12 -2.67 7.62 30.89 0.24 -2.44 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.37 16.05 4.09 -92.71 -0.38 15.67 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.41 7.13 8.42 -92.71 -0.78 6.35 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.06 1.28 8.10 -2.38 -0.02 1.26 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.23 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.23 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.07 2.21 7.03 -2.39 -0.02 2.19 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.55 7.58 -2.39 -0.02 1.53 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.05 377.86 3.52 -70.53 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.23 Total: 34.64 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.38 Total: -16.57 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.46 Total: -114.53 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.07 Total: -21.17 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -74.05 3.52 -70.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202736666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.396 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds