Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47178 * 269.99984 * 3 2 1 5 5 H 1.48498 * 109.46819 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46942 * 149.99890 * 3 2 1 7 7 C 1.38809 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00255 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00204 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46998 * 179.97438 * 10 9 7 12 12 C 1.53046 * 109.45491 * 174.99906 * 11 10 9 13 13 C 1.53190 * 109.30781 * 181.37355 * 12 11 10 14 14 N 1.46931 * 108.77890 * 305.36424 * 13 12 11 15 15 C 1.34773 * 120.63149 * 233.58763 * 14 13 12 16 16 O 1.21612 * 120.00284 * 5.84391 * 15 14 13 17 17 C 1.47381 * 119.99738 * 185.84040 * 15 14 13 18 18 C 1.47013 * 127.19451 * 36.28908 * 17 15 14 19 19 C 1.34174 * 105.95349 * 179.69968 * 18 17 15 20 20 O 1.34214 * 109.12653 * 0.25777 * 19 18 17 21 21 C 1.33645 * 110.90775 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.80531 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49451 * 8.77354 * 22 21 20 24 24 C 1.53003 * 117.49602 * 300.11440 * 22 21 20 25 25 C 1.46925 * 118.73297 * 53.86090 * 14 13 12 26 26 C 1.53039 * 109.45156 * 295.06176 * 11 10 9 27 27 H 0.97001 * 119.99619 * 359.97438 * 1 2 3 28 28 H 0.96993 * 119.99680 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46966 * 59.99457 * 10 9 7 30 30 H 1.08999 * 109.46705 * 300.00300 * 10 9 7 31 31 H 1.09001 * 109.45797 * 55.03176 * 11 10 9 32 32 H 1.09001 * 109.49671 * 61.42542 * 12 11 10 33 33 H 1.08998 * 109.49895 * 301.32518 * 12 11 10 34 34 H 1.09000 * 109.58931 * 185.57877 * 13 12 11 35 35 H 1.09001 * 109.70973 * 65.22373 * 13 12 11 36 36 H 1.08004 * 127.02044 * 359.96307 * 18 17 15 37 37 H 1.08008 * 125.43956 * 180.26595 * 19 18 17 38 38 H 1.08997 * 115.55359 * 154.44206 * 22 21 20 39 39 H 1.09001 * 117.49809 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50003 * 145.02298 * 23 22 21 41 41 H 1.09001 * 117.49696 * 214.97435 * 24 22 21 42 42 H 1.09004 * 117.50044 * 359.97438 * 24 22 21 43 43 H 1.08995 * 109.58570 * 65.93178 * 25 14 13 44 44 H 1.09005 * 109.58509 * 186.35140 * 25 14 13 45 45 H 1.09002 * 109.49750 * 298.57290 * 26 11 10 46 46 H 1.08993 * 109.49864 * 58.66732 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8253 -6.1413 -0.1280 13 6 0.8249 -7.3009 -0.1629 14 7 -0.0415 -7.2139 1.0206 15 6 -0.1835 -8.2692 1.8468 16 8 0.4881 -9.2688 1.6774 17 6 -1.1527 -8.2118 2.9556 18 6 -2.4713 -7.5617 2.9506 19 6 -2.9918 -7.7742 4.1689 20 8 -2.1178 -8.4796 4.9036 21 6 -1.0124 -8.7481 4.2021 22 6 0.1829 -9.5187 4.7008 23 6 0.0571 -10.2184 6.0556 24 6 0.9230 -8.9634 5.9194 25 6 -0.7548 -5.9565 1.2829 26 6 0.2675 -4.8101 1.3046 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 -0.0016 29 1 2.6841 -3.7149 0.8888 30 1 2.6854 -3.7141 -0.8911 31 1 0.3805 -4.7127 -0.8447 32 1 2.4908 -6.2605 0.7269 33 1 2.4105 -6.1379 -1.0476 34 1 1.3633 -8.2486 -0.1526 35 1 0.2177 -7.2356 -1.0657 36 1 -2.9293 -7.0264 2.1320 37 1 -3.9597 -7.4323 4.5047 38 1 0.7778 -10.0126 3.9326 39 1 -0.8900 -10.1211 6.5863 40 1 0.5696 -11.1724 6.1788 41 1 2.0049 -9.0925 5.9530 42 1 0.5457 -8.0406 6.3601 43 1 -1.4878 -5.7812 0.4956 44 1 -1.2589 -6.0167 2.2475 45 1 0.9478 -4.9419 2.1461 46 1 -0.2558 -3.8593 1.4048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206050987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = 14.927793 kcal Electronic energy + Delta-G solvation = -26777.912476 eV Core-core repulsion = 23056.214163 eV Total energy + Delta-G solvation = -3721.698313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.83084 -39.94981 -37.69401 -37.28008 -34.92242 -33.47690 -32.55794 -30.91467 -30.29107 -29.92812 -26.84300 -24.58505 -23.52469 -23.17573 -22.89713 -22.65446 -21.52474 -20.80289 -19.90930 -18.83917 -17.68028 -17.08954 -16.66896 -16.19857 -15.94151 -15.70382 -15.08716 -14.73504 -14.70060 -14.22598 -13.90121 -13.73532 -13.53422 -13.29373 -13.24510 -12.85004 -12.59296 -12.43240 -12.21547 -12.11192 -11.88662 -11.76564 -11.25556 -11.13632 -10.99088 -10.84028 -10.76672 -10.40456 -10.35098 -10.27240 -10.05958 -9.99584 -9.64671 -9.64149 -8.86921 -8.73051 -8.51997 -6.91125 -5.77037 -3.04855 1.21177 1.88378 2.52299 2.91649 3.14199 3.43280 3.48592 3.50050 3.57767 4.07004 4.44300 4.47670 4.58985 4.61757 4.71171 4.91215 4.93933 5.05881 5.13760 5.20678 5.23500 5.30777 5.39357 5.44699 5.49770 5.56557 5.58084 5.66473 5.76073 5.78298 5.79582 5.84799 5.97995 6.00261 6.08121 6.12267 6.21671 6.30310 6.47435 6.51082 6.66262 6.81853 6.83633 6.93895 7.41761 7.70363 8.15836 8.42541 9.53674 10.12019 10.46867 11.46037 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.002812 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.781779 B = 9955.337981 C =10364.579822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.593 3.407 16 O -0.548 6.548 17 C -0.228 4.228 18 C -0.186 4.186 19 C -0.037 4.037 20 O -0.175 6.175 21 C 0.097 3.903 22 C -0.092 4.092 23 C -0.167 4.167 24 C -0.162 4.162 25 C 0.099 3.901 26 C -0.124 4.124 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.161 0.839 37 H 0.210 0.790 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -20.381 9.099 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.008 4.008 14 N -0.331 5.331 15 C 0.382 3.618 16 O -0.428 6.428 17 C -0.232 4.232 18 C -0.205 4.205 19 C -0.103 4.103 20 O -0.072 6.072 21 C 0.044 3.956 22 C -0.110 4.110 23 C -0.204 4.204 24 C -0.199 4.199 25 C -0.024 4.024 26 C -0.162 4.162 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.178 0.822 37 H 0.226 0.774 38 H 0.166 0.834 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.409 -20.853 9.291 23.251 hybrid contribution -0.086 1.348 -0.341 1.393 sum -4.495 -19.505 8.950 21.926 Atomic orbital electron populations 1.69652 1.05078 1.25587 1.58056 1.24721 0.95530 0.97638 1.03168 0.86196 0.78667 0.83880 0.77510 1.21756 1.21792 1.20797 1.19239 0.91040 0.84241 1.42333 0.91279 1.42376 1.05811 0.99988 1.89448 1.20670 0.93176 0.85376 0.97721 1.21313 0.97853 0.94422 0.97716 1.21904 0.97734 0.94054 1.02693 1.21641 0.92475 1.00189 0.86539 1.47953 1.46438 1.12778 1.25955 1.17243 0.81231 0.82622 0.80691 1.90731 1.47075 1.32019 1.72981 1.21019 0.97864 1.08635 0.95705 1.22944 0.94545 1.04053 0.98996 1.23885 0.95798 0.99282 0.91290 1.83700 1.23801 1.57850 1.41817 1.21544 0.87021 0.97478 0.89530 1.20772 0.94162 1.02724 0.93321 1.23052 1.02472 0.97168 0.97697 1.23117 0.99260 0.98338 0.99195 1.22233 0.94944 0.82902 1.02299 1.21991 0.97941 0.98116 0.98121 0.93568 0.78288 0.96458 0.96365 0.91002 0.91564 0.90627 0.89176 0.91465 0.82152 0.77394 0.83385 0.88050 0.87700 0.87487 0.88214 0.91296 0.88985 0.91851 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.28 5.32 -59.91 -0.32 -18.59 16 10 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 11 C -0.09 -1.48 2.19 -90.58 -0.20 -1.68 16 12 C -0.13 -1.67 5.36 -26.61 -0.14 -1.81 16 13 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 14 N -0.60 -8.05 2.97 -173.79 -0.52 -8.56 16 15 C 0.59 8.69 7.49 -12.54 -0.09 8.59 16 16 O -0.55 -9.25 15.10 5.27 0.08 -9.17 16 17 C -0.23 -2.94 5.44 -103.28 -0.56 -3.50 16 18 C -0.19 -1.91 8.68 -37.46 -0.33 -2.23 16 19 C -0.04 -0.32 12.03 29.30 0.35 0.03 16 20 O -0.18 -1.89 10.23 7.67 0.08 -1.81 16 21 C 0.10 1.16 6.85 -34.96 -0.24 0.93 16 22 C -0.09 -0.98 5.92 -91.77 -0.54 -1.52 16 23 C -0.17 -1.34 10.17 -26.69 -0.27 -1.61 16 24 C -0.16 -1.40 10.24 -26.69 -0.27 -1.68 16 25 C 0.10 1.24 5.51 -3.49 -0.02 1.22 16 26 C -0.12 -1.87 5.26 -26.39 -0.14 -2.01 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.90 6.84 -40.82 -0.28 9.62 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.16 1.38 7.25 -52.48 -0.38 1.00 16 37 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.15 1.74 6.91 -51.93 -0.36 1.38 16 39 H 0.10 0.79 7.96 -51.93 -0.41 0.37 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.08 4.56 -51.93 -0.24 0.85 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.99 371.68 -9.14 -42.14 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.02 Total: 8.29 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.75 Total: -8.02 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.11 Total: -54.39 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.16 Total: -10.98 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.99 -9.14 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.065 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds