Wall clock time and date at job start Tue Mar 31 2020 12:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47178 * 269.99984 * 3 2 1 5 5 H 1.48498 * 109.46819 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46942 * 149.99890 * 3 2 1 7 7 C 1.38809 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00255 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00204 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46998 * 179.97438 * 10 9 7 12 12 C 1.53046 * 109.45491 * 174.99906 * 11 10 9 13 13 C 1.53190 * 109.30781 * 181.37355 * 12 11 10 14 14 N 1.46931 * 108.77890 * 305.36424 * 13 12 11 15 15 C 1.34773 * 120.63149 * 233.58763 * 14 13 12 16 16 O 1.21612 * 120.00284 * 5.84391 * 15 14 13 17 17 C 1.47381 * 119.99738 * 185.84040 * 15 14 13 18 18 C 1.47013 * 127.19451 * 36.28908 * 17 15 14 19 19 C 1.34174 * 105.95349 * 179.69968 * 18 17 15 20 20 O 1.34214 * 109.12653 * 0.25777 * 19 18 17 21 21 C 1.33645 * 110.90775 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.80531 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49451 * 8.77354 * 22 21 20 24 24 C 1.53003 * 117.49602 * 300.11440 * 22 21 20 25 25 C 1.46925 * 118.73297 * 53.86090 * 14 13 12 26 26 C 1.53039 * 109.45156 * 295.06176 * 11 10 9 27 27 H 0.97001 * 119.99619 * 359.97438 * 1 2 3 28 28 H 0.96993 * 119.99680 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46966 * 59.99457 * 10 9 7 30 30 H 1.08999 * 109.46705 * 300.00300 * 10 9 7 31 31 H 1.09001 * 109.45797 * 55.03176 * 11 10 9 32 32 H 1.09001 * 109.49671 * 61.42542 * 12 11 10 33 33 H 1.08998 * 109.49895 * 301.32518 * 12 11 10 34 34 H 1.09000 * 109.58931 * 185.57877 * 13 12 11 35 35 H 1.09001 * 109.70973 * 65.22373 * 13 12 11 36 36 H 1.08004 * 127.02044 * 359.96307 * 18 17 15 37 37 H 1.08008 * 125.43956 * 180.26595 * 19 18 17 38 38 H 1.08997 * 115.55359 * 154.44206 * 22 21 20 39 39 H 1.09001 * 117.49809 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50003 * 145.02298 * 23 22 21 41 41 H 1.09001 * 117.49696 * 214.97435 * 24 22 21 42 42 H 1.09004 * 117.50044 * 359.97438 * 24 22 21 43 43 H 1.08995 * 109.58570 * 65.93178 * 25 14 13 44 44 H 1.09005 * 109.58509 * 186.35140 * 25 14 13 45 45 H 1.09002 * 109.49750 * 298.57290 * 26 11 10 46 46 H 1.08993 * 109.49864 * 58.66732 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8253 -6.1413 -0.1280 13 6 0.8249 -7.3009 -0.1629 14 7 -0.0415 -7.2139 1.0206 15 6 -0.1835 -8.2692 1.8468 16 8 0.4881 -9.2688 1.6774 17 6 -1.1527 -8.2118 2.9556 18 6 -2.4713 -7.5617 2.9506 19 6 -2.9918 -7.7742 4.1689 20 8 -2.1178 -8.4796 4.9036 21 6 -1.0124 -8.7481 4.2021 22 6 0.1829 -9.5187 4.7008 23 6 0.0571 -10.2184 6.0556 24 6 0.9230 -8.9634 5.9194 25 6 -0.7548 -5.9565 1.2829 26 6 0.2675 -4.8101 1.3046 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 -0.0016 29 1 2.6841 -3.7149 0.8888 30 1 2.6854 -3.7141 -0.8911 31 1 0.3805 -4.7127 -0.8447 32 1 2.4908 -6.2605 0.7269 33 1 2.4105 -6.1379 -1.0476 34 1 1.3633 -8.2486 -0.1526 35 1 0.2177 -7.2356 -1.0657 36 1 -2.9293 -7.0264 2.1320 37 1 -3.9597 -7.4323 4.5047 38 1 0.7778 -10.0126 3.9326 39 1 -0.8900 -10.1211 6.5863 40 1 0.5696 -11.1724 6.1788 41 1 2.0049 -9.0925 5.9530 42 1 0.5457 -8.0406 6.3601 43 1 -1.4878 -5.7812 0.4956 44 1 -1.2589 -6.0167 2.2475 45 1 0.9478 -4.9419 2.1461 46 1 -0.2558 -3.8593 1.4048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206050987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:09 Heat of formation + Delta-G solvation = -4.163579 kcal Electronic energy + Delta-G solvation = -26778.740340 eV Core-core repulsion = 23056.214163 eV Total energy + Delta-G solvation = -3722.526177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.63553 -41.06446 -38.90062 -38.05400 -36.55411 -34.71920 -33.89700 -32.24639 -31.85544 -30.72470 -28.34496 -26.01926 -24.73390 -24.42098 -23.83825 -23.37459 -22.78904 -21.83703 -21.07548 -19.77707 -19.17890 -18.55097 -17.64214 -17.07857 -16.90638 -16.68381 -16.50318 -16.08348 -15.63582 -15.52991 -15.41982 -15.30242 -14.73937 -14.50944 -14.24372 -14.08077 -13.81743 -13.64011 -13.39451 -13.11189 -13.01064 -12.89500 -12.75236 -12.50025 -12.25312 -12.16581 -11.98548 -11.95891 -11.69572 -11.57778 -11.45579 -11.33346 -11.09770 -10.93234 -10.59427 -9.73185 -9.42142 -8.97893 -7.94629 -5.22500 0.32440 1.11143 1.47740 1.48896 1.57325 1.70896 1.91970 2.14461 2.56427 2.85615 3.35214 3.38776 3.49325 3.73034 3.75722 3.80001 3.91284 3.93844 3.97833 4.08069 4.19627 4.29131 4.34582 4.40859 4.52894 4.56920 4.68064 4.68445 4.71123 4.80255 4.83118 4.85441 4.95094 5.00782 5.01289 5.05517 5.06838 5.14687 5.15552 5.26833 5.36241 5.47143 5.53112 5.56890 6.02355 6.28348 6.34207 7.06589 7.35112 8.10888 8.35710 9.28727 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.002812 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.781779 B = 9955.337981 C =10364.579822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.084 4.084 12 C -0.115 4.115 13 C 0.115 3.885 14 N -0.599 5.599 15 C 0.589 3.411 16 O -0.579 6.579 17 C -0.257 4.257 18 C -0.201 4.201 19 C -0.024 4.024 20 O -0.178 6.178 21 C 0.089 3.911 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.158 4.158 25 C 0.108 3.892 26 C -0.117 4.117 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.011 0.989 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.176 0.824 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -20.771 9.728 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.153 4.153 13 C -0.007 4.007 14 N -0.330 5.330 15 C 0.379 3.621 16 O -0.461 6.461 17 C -0.261 4.261 18 C -0.219 4.219 19 C -0.089 4.089 20 O -0.074 6.074 21 C 0.036 3.964 22 C -0.136 4.136 23 C -0.184 4.184 24 C -0.195 4.195 25 C -0.014 4.014 26 C -0.155 4.155 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.193 0.807 37 H 0.267 0.733 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.875 -21.259 9.917 23.960 hybrid contribution 0.086 1.426 -0.519 1.520 sum -4.789 -19.833 9.398 22.464 Atomic orbital electron populations 1.69794 1.06412 1.26056 1.59438 1.25509 0.96426 1.00869 1.03696 0.85180 0.77700 0.79692 0.77431 1.21410 1.22028 1.19725 1.19607 0.91397 0.85550 1.41297 0.91107 1.42544 1.05691 1.00948 1.89301 1.20804 0.93863 0.85025 0.97202 1.21198 0.97098 0.93895 0.98056 1.21811 0.97604 0.92763 1.03159 1.21673 0.92515 0.99509 0.87016 1.48014 1.46376 1.12721 1.25905 1.17556 0.81184 0.82334 0.80988 1.90703 1.48419 1.33149 1.73840 1.21110 0.98945 1.10406 0.95675 1.23150 0.93698 1.04788 1.00308 1.24714 0.96333 0.97301 0.90505 1.83719 1.23668 1.58054 1.42007 1.21761 0.87645 0.97342 0.89611 1.20735 0.94500 1.04385 0.93989 1.23153 1.02566 0.97586 0.95116 1.23189 0.99939 0.98744 0.97629 1.22198 0.94196 0.81393 1.03632 1.21868 0.98106 0.98225 0.97320 0.93949 0.79085 0.97056 0.96221 0.90894 0.92355 0.89099 0.89538 0.89760 0.80686 0.73285 0.85192 0.87562 0.85962 0.86462 0.88391 0.89684 0.87901 0.93003 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.30 5.32 -343.44 -1.83 -39.12 16 10 C 0.16 6.28 5.65 86.38 0.49 6.77 16 11 C -0.08 -2.58 2.19 -10.77 -0.02 -2.61 16 12 C -0.11 -2.95 5.36 30.67 0.16 -2.78 16 13 C 0.11 2.80 6.44 86.36 0.56 3.36 16 14 N -0.60 -15.68 2.97 -822.00 -2.44 -18.12 16 15 C 0.59 17.27 7.49 86.65 0.65 17.92 16 16 O -0.58 -19.96 15.10 -4.07 -0.06 -20.02 16 17 C -0.26 -6.52 5.44 -18.99 -0.10 -6.63 16 18 C -0.20 -3.78 8.68 23.64 0.21 -3.57 16 19 C -0.02 -0.36 12.03 66.89 0.80 0.45 16 20 O -0.18 -3.56 10.23 4.55 0.05 -3.51 16 21 C 0.09 2.11 6.85 25.26 0.17 2.28 16 22 C -0.12 -2.51 5.92 -11.54 -0.07 -2.58 16 23 C -0.15 -2.17 10.17 30.62 0.31 -1.86 16 24 C -0.16 -2.62 10.24 30.62 0.31 -2.31 16 25 C 0.11 2.60 5.51 86.51 0.48 3.08 16 26 C -0.12 -3.52 5.26 30.82 0.16 -3.36 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.38 19.74 6.84 -92.71 -0.63 19.10 16 29 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.23 7.00 -2.39 -0.02 2.21 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.18 2.64 7.25 -2.91 -0.02 2.62 16 37 H 0.25 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.13 3.21 6.91 -2.39 -0.02 3.19 16 39 H 0.11 1.47 7.96 -2.39 -0.02 1.45 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.10 2.31 4.56 -2.38 -0.01 2.30 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.31 7.15 -2.39 -0.02 2.29 16 Total: -1.00 -71.29 371.68 3.80 -67.49 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.35 Total: 31.70 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.42 Total: -8.47 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -3.98 Total: -115.17 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.01 Total: -23.54 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -71.29 3.80 -67.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.328 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds