Wall clock time and date at job start Tue Mar 31 2020 12:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38232 * 119.99601 * 2 1 4 4 C 1.38235 * 119.99554 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00366 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00301 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46964 * 90.00094 * 6 5 4 8 8 C 1.50696 * 109.46964 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00363 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99915 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.78149 * 36.78862 * 11 10 8 13 13 C 1.54319 * 110.72278 * 273.54642 * 11 10 8 14 14 N 1.47019 * 107.27411 * 263.83310 * 13 11 10 15 15 C 1.36937 * 125.65003 * 181.01997 * 14 13 11 16 16 H 1.07995 * 119.99678 * 13.63362 * 15 14 13 17 17 C 1.38808 * 119.99836 * 193.62087 * 15 14 13 18 18 N 1.31619 * 120.00144 * 27.27936 * 17 15 14 19 19 Si 1.86804 * 120.00226 * 207.27370 * 17 15 14 20 20 H 1.48502 * 109.47029 * 90.00239 * 19 17 15 21 21 H 1.48503 * 109.46862 * 330.00467 * 19 17 15 22 22 H 1.48493 * 109.47366 * 210.00567 * 19 17 15 23 23 C 1.47429 * 108.70035 * 1.28221 * 14 13 11 24 24 C 1.55122 * 104.72375 * 335.55720 * 23 14 13 25 25 H 1.09002 * 111.19237 * 279.18719 * 24 23 14 26 26 O 1.42902 * 110.94245 * 155.28823 * 24 23 14 27 27 C 1.38236 * 119.99669 * 0.27813 * 5 4 3 28 28 C 1.38236 * 119.99713 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46536 * 90.00730 * 1 2 3 30 30 H 1.08999 * 109.46620 * 210.00226 * 1 2 3 31 31 H 1.08992 * 109.47148 * 330.00451 * 1 2 3 32 32 H 1.08003 * 120.00355 * 359.97438 * 3 2 1 33 33 H 1.08010 * 119.99874 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47343 * 330.00778 * 6 5 4 35 35 H 1.08996 * 109.47485 * 210.00318 * 6 5 4 36 36 H 1.08996 * 109.46936 * 59.99856 * 7 6 5 37 37 H 1.08998 * 109.46794 * 300.00069 * 7 6 5 38 38 H 0.96996 * 119.99783 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.88113 * 144.41214 * 13 11 10 40 40 H 1.09006 * 110.00857 * 23.32177 * 13 11 10 41 41 H 0.97003 * 119.99885 * 5.84250 * 18 17 15 42 42 H 1.09001 * 110.36546 * 94.48417 * 23 14 13 43 43 H 1.08995 * 110.36676 * 216.80510 * 23 14 13 44 44 H 0.96703 * 114.00123 * 67.95196 * 26 24 23 45 45 H 1.08001 * 119.99875 * 179.73251 * 27 5 4 46 46 H 1.07991 * 120.00572 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0001 0.0016 6 6 5.7787 0.0001 0.0016 7 6 6.2887 0.0013 1.4442 8 6 7.7957 0.0007 1.4442 9 8 8.4021 -0.0002 0.3939 10 7 8.4696 0.0021 2.6115 11 6 9.9345 0.0010 2.6115 12 1 10.3218 0.6095 1.7943 13 6 10.4794 -1.4402 2.5247 14 7 10.7746 -1.8787 3.8965 15 6 11.2952 -3.0946 4.2512 16 1 11.7276 -3.7371 3.4985 17 6 11.2673 -3.5011 5.5781 18 7 10.3314 -3.0488 6.3855 19 14 12.5581 -4.6903 6.2180 20 1 13.7217 -3.9263 6.7354 21 1 13.0012 -5.5804 5.1150 22 1 11.9775 -5.5093 7.3122 23 6 10.4113 -0.7950 4.8277 24 6 10.4838 0.4986 3.9746 25 1 11.5113 0.8493 3.8773 26 8 9.6469 1.5192 4.5223 27 6 3.5806 -1.1971 -0.0037 28 6 2.1982 -1.1972 -0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6581 2.1325 -0.0004 33 1 4.1206 2.1326 0.0001 34 1 6.1421 0.8896 -0.5129 35 1 6.1421 -0.8903 -0.5114 36 1 5.9253 -0.8882 1.9588 37 1 5.9253 0.8918 1.9572 38 1 7.9845 0.0032 3.4514 39 1 11.3903 -1.4567 1.9261 40 1 9.7312 -2.0957 2.0789 41 1 9.6126 -2.4996 6.0352 42 1 9.4011 -0.9448 5.2086 43 1 11.1246 -0.7468 5.6505 44 1 9.9501 1.8614 5.3744 45 1 4.1206 -2.1324 -0.0072 46 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219976074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:59 Heat of formation + Delta-G solvation = -72.647982 kcal Electronic energy + Delta-G solvation = -26094.077329 eV Core-core repulsion = 22368.581445 eV Total energy + Delta-G solvation = -3725.495884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26071 -40.34929 -39.47123 -36.86108 -35.64892 -35.38568 -33.65745 -32.17460 -31.80277 -30.18084 -29.20097 -27.84024 -26.23479 -24.64023 -23.60534 -22.41390 -22.04583 -21.40005 -21.21613 -19.69673 -18.59682 -18.13328 -17.16665 -16.91349 -16.83014 -16.43202 -16.12006 -15.90131 -15.65280 -15.41823 -15.29212 -14.66764 -14.56431 -14.48394 -14.26800 -14.13930 -13.90929 -13.65493 -13.40075 -13.27549 -13.01069 -12.88895 -12.73311 -12.51432 -12.46272 -12.15127 -11.96356 -11.91046 -11.89067 -11.73868 -11.72006 -11.05157 -10.91033 -10.58809 -10.13005 -9.81959 -9.37818 -9.11203 -8.37437 -5.38273 0.40206 0.50828 1.57347 1.60317 1.64184 1.82430 2.13074 2.58611 2.83639 2.93357 3.16252 3.48070 3.60618 3.67059 3.78761 3.88785 3.99707 4.08907 4.11876 4.14968 4.17589 4.27997 4.36734 4.45919 4.49820 4.58360 4.62599 4.74281 4.81661 4.82758 4.84714 4.91988 4.93871 4.96829 5.06008 5.13367 5.22422 5.31988 5.45967 5.52799 5.58547 5.71998 5.74238 6.14300 6.25768 6.51662 6.74588 6.82790 7.20508 7.63174 8.17293 8.95434 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.002502 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.038848 B =11186.678658 C =11871.735327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.056 4.056 7 C -0.123 4.123 8 C 0.510 3.490 9 O -0.583 6.583 10 N -0.700 5.700 11 C 0.153 3.847 12 H 0.102 0.898 13 C 0.127 3.873 14 N -0.619 5.619 15 C -0.349 4.349 16 H 0.059 0.941 17 C -0.074 4.074 18 N -0.944 5.944 19 Si 1.119 2.881 20 H -0.281 1.281 21 H -0.276 1.276 22 H -0.293 1.293 23 C 0.126 3.874 24 C 0.099 3.901 25 H 0.093 0.907 26 O -0.556 6.556 27 C -0.126 4.126 28 C -0.129 4.129 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.410 0.590 39 H 0.038 0.962 40 H 0.011 0.989 41 H 0.258 0.742 42 H 0.017 0.983 43 H 0.033 0.967 44 H 0.400 0.600 45 H 0.123 0.877 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 11.248 -9.436 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.093 4.093 7 C -0.162 4.162 8 C 0.299 3.701 9 O -0.464 6.464 10 N -0.351 5.351 11 C 0.047 3.953 12 H 0.120 0.880 13 C 0.001 3.999 14 N -0.348 5.348 15 C -0.477 4.477 16 H 0.077 0.923 17 C -0.270 4.270 18 N -0.587 5.587 19 Si 0.943 3.057 20 H -0.207 1.207 21 H -0.202 1.202 22 H -0.219 1.219 23 C 0.000 4.000 24 C 0.038 3.962 25 H 0.111 0.889 26 O -0.364 6.364 27 C -0.144 4.144 28 C -0.147 4.147 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.246 0.754 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.250 0.750 45 H 0.141 0.859 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.364 10.296 -9.361 20.729 hybrid contribution -0.232 0.345 -0.442 0.606 sum -15.596 10.640 -9.802 21.273 Atomic orbital electron populations 1.20828 0.89536 1.03557 1.02990 1.20289 0.97481 0.93079 0.99212 1.21308 0.94034 0.98445 1.00604 1.21270 0.94699 0.97793 0.99998 1.19878 0.94934 0.93838 1.01024 1.20197 0.90626 1.03523 0.94991 1.21621 0.88954 1.06027 0.99635 1.21278 0.91487 0.74486 0.82867 1.90657 1.71525 1.51839 1.32370 1.45734 1.06138 1.73883 1.09297 1.21769 0.81238 0.94810 0.97530 0.88037 1.21822 0.97066 0.93607 0.87447 1.44644 1.75412 1.13056 1.01646 1.20048 1.35542 0.96026 0.96084 0.92317 1.27112 1.02543 1.03705 0.93648 1.70886 1.11399 1.37114 1.39287 0.82788 0.73526 0.74023 0.75318 1.20730 1.20151 1.21906 1.22148 0.97229 0.87724 0.92916 1.23116 0.94358 0.86857 0.91824 0.88907 1.86353 1.53572 1.54516 1.41922 1.21253 0.94840 0.97892 1.00459 1.21273 0.93959 0.98568 1.00910 0.90434 0.90990 0.90610 0.84194 0.84859 0.90613 0.91701 0.88140 0.86625 0.75433 0.94363 0.97077 0.93127 0.96505 0.94886 0.74977 0.85914 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 2 C -0.10 -1.66 5.88 -19.86 -0.12 -1.78 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 5 C -0.10 -2.03 5.13 -19.87 -0.10 -2.13 16 6 C -0.06 -1.28 4.64 29.85 0.14 -1.14 16 7 C -0.12 -2.85 5.68 29.85 0.17 -2.68 16 8 C 0.51 16.12 7.83 87.65 0.69 16.81 16 9 O -0.58 -22.33 15.71 -3.03 -0.05 -22.38 16 10 N -0.70 -22.65 4.78 -436.92 -2.09 -24.74 16 11 C 0.15 5.44 3.13 46.18 0.14 5.59 16 12 H 0.10 3.52 7.70 -2.39 -0.02 3.50 16 13 C 0.13 5.57 6.98 86.73 0.60 6.18 16 14 N -0.62 -31.38 3.33 -691.57 -2.30 -33.68 16 15 C -0.35 -19.88 10.05 84.03 0.84 -19.04 16 16 H 0.06 3.38 7.96 -2.91 -0.02 3.36 16 17 C -0.07 -4.21 5.09 84.86 0.43 -3.77 16 18 N -0.94 -56.58 12.82 21.65 0.28 -56.31 16 19 Si 1.12 50.82 30.00 68.60 2.06 52.88 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 C 0.13 5.55 4.93 86.93 0.43 5.98 16 24 C 0.10 3.30 4.23 32.06 0.14 3.43 16 25 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 26 O -0.56 -15.04 12.63 -148.98 -1.88 -16.92 16 27 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 28 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.08 1.78 8.04 -2.39 -0.02 1.77 16 35 H 0.06 1.67 8.04 -2.39 -0.02 1.66 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.41 12.47 8.20 -92.71 -0.76 11.71 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 40 H 0.01 0.54 8.05 -2.38 -0.02 0.52 16 41 H 0.26 15.53 5.83 -92.71 -0.54 14.99 16 42 H 0.02 0.81 6.84 -2.39 -0.02 0.80 16 43 H 0.03 1.60 7.73 -2.39 -0.02 1.58 16 44 H 0.40 7.53 9.12 -74.05 -0.68 6.86 16 45 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.13 1.94 8.06 -2.92 -0.02 1.92 16 Total: -1.00 -72.82 379.61 0.74 -72.08 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.22 Total: 30.53 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.94 Total: -1.46 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.11 Total: -114.73 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.93 Total: -39.30 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.06 Total: 52.88 kcal Total: -72.82 0.74 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219976074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.564 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds