Wall clock time and date at job start Tue Mar 31 2020 12:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 7 7 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 8 8 C 1.50706 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.46584 * 85.00560 * 8 7 2 10 10 C 1.50706 * 109.46584 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99708 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00050 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.88716 * 34.30172 * 13 12 10 15 15 C 1.54905 * 111.00916 * 270.41724 * 13 12 10 16 16 N 1.47459 * 104.81432 * 204.94994 * 15 13 12 17 17 C 1.36942 * 125.63010 * 204.05205 * 16 15 13 18 18 H 1.08001 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00396 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46969 * 89.99682 * 21 19 17 23 23 H 1.48506 * 109.47449 * 209.99755 * 21 19 17 24 24 H 1.48495 * 109.47261 * 329.99619 * 21 19 17 25 25 C 1.47024 * 108.72413 * 24.06851 * 16 15 13 26 26 C 1.54325 * 107.26773 * 358.97316 * 25 16 15 27 27 H 1.09004 * 110.71822 * 219.43991 * 26 25 16 28 28 O 1.42905 * 110.71682 * 96.17408 * 26 25 16 29 29 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 30 30 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 31 31 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 32 32 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 35 35 H 1.07999 * 119.99941 * 180.23499 * 6 5 4 36 36 H 1.09004 * 109.46661 * 205.00021 * 8 7 2 37 37 H 1.08999 * 109.47085 * 325.00239 * 8 7 2 38 38 H 1.08996 * 109.47302 * 299.99401 * 9 8 7 39 39 H 1.08993 * 109.47248 * 60.00179 * 9 8 7 40 40 H 0.97005 * 120.00130 * 359.97438 * 12 10 9 41 41 H 1.09004 * 110.36326 * 323.75384 * 15 13 12 42 42 H 1.09003 * 110.36515 * 86.07031 * 15 13 12 43 43 H 0.97003 * 120.00464 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.87865 * 239.55612 * 25 16 15 45 45 H 1.08994 * 110.00996 * 118.46638 * 25 16 15 46 46 H 0.96701 * 113.99797 * 66.46955 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 6 3.5807 -1.1970 -0.0012 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 1.0802 -2.8805 -1.4376 10 6 0.3272 -4.1860 -1.4376 11 8 0.1043 -4.7575 -0.3914 12 7 -0.0976 -4.7188 -2.6005 13 6 -0.8291 -5.9880 -2.6006 14 1 -1.4549 -6.0761 -1.7124 15 6 0.1424 -7.1889 -2.7167 16 7 -0.6656 -8.2718 -3.3073 17 6 -0.4159 -9.6125 -3.1824 18 1 0.4356 -9.9523 -2.6115 19 6 -1.2565 -10.5346 -3.7906 20 7 -2.2938 -10.1206 -4.4868 21 14 -0.9154 -12.3634 -3.6208 22 1 -1.6160 -12.8883 -2.4213 23 1 -1.4053 -13.0727 -4.8301 24 1 0.5460 -12.5831 -3.4762 25 6 -1.7831 -7.6742 -4.0526 26 6 -1.6734 -6.1431 -3.8931 27 1 -2.6598 -5.6971 -3.7654 28 8 -0.9967 -5.5655 -5.0114 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 -0.0001 -0.0115 35 1 4.1206 -2.1323 -0.0021 36 1 2.0697 -3.2825 0.4334 37 1 0.5340 -2.3959 0.5892 38 1 0.4552 -2.1002 -1.8715 39 1 1.9907 -2.9867 -2.0273 40 1 0.0810 -4.2618 -3.4373 41 1 0.9777 -6.9392 -3.3709 42 1 0.5054 -7.4798 -1.7309 43 1 -2.8815 -10.7650 -4.9115 44 1 -2.7308 -8.0228 -3.6422 45 1 -1.7145 -7.9430 -5.1067 46 1 -1.4826 -5.6362 -5.8445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220422100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:06 Heat of formation + Delta-G solvation = -44.607491 kcal Electronic energy + Delta-G solvation = -26186.315071 eV Core-core repulsion = 22462.035114 eV Total energy + Delta-G solvation = -3724.279957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07118 -39.40508 -37.89744 -34.85465 -34.36034 -33.89251 -32.65842 -31.68168 -30.07383 -28.44228 -27.31913 -26.91116 -24.95820 -24.02144 -22.16482 -20.94663 -20.51945 -20.16586 -19.81300 -17.51884 -16.90369 -16.78542 -16.32234 -16.11389 -15.35042 -15.06043 -14.95661 -14.78818 -14.23133 -14.00443 -13.73542 -13.38976 -13.21899 -13.12047 -13.06813 -12.67416 -12.61731 -12.49192 -12.37478 -12.14779 -11.90007 -11.41262 -11.29066 -11.05986 -10.95457 -10.84726 -10.83223 -10.51557 -10.45049 -10.12373 -9.81697 -9.64997 -9.31552 -8.99486 -8.76363 -8.69334 -8.61672 -6.87304 -5.74920 -3.07807 1.13365 1.17574 2.85945 3.35270 3.40348 3.45299 3.47220 3.59002 4.45549 4.52808 4.59193 4.62511 4.75212 4.80762 4.91877 4.97719 5.08582 5.18129 5.28684 5.30758 5.36774 5.40417 5.48446 5.52774 5.57521 5.60365 5.71857 5.76093 5.81770 5.87808 5.92906 6.09243 6.13951 6.22905 6.28015 6.30549 6.50699 6.63377 6.67763 6.81746 6.95496 7.32954 7.44523 7.72490 7.85055 8.06696 8.19905 8.50586 9.18020 9.78150 10.42680 11.37404 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.002332 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.575727 B =12004.177613 C =12465.176946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.067 4.067 9 C -0.133 4.133 10 C 0.508 3.492 11 O -0.545 6.545 12 N -0.709 5.709 13 C 0.138 3.862 14 H 0.102 0.898 15 C 0.132 3.868 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.067 3.933 27 H 0.060 0.940 28 O -0.567 6.567 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.406 0.594 41 H 0.025 0.975 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 23.497 4.665 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.130 4.130 7 C -0.080 4.080 8 C -0.105 4.105 9 C -0.173 4.173 10 C 0.294 3.706 11 O -0.422 6.422 12 N -0.360 5.360 13 C 0.033 3.967 14 H 0.120 0.880 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.029 3.971 26 C 0.007 3.993 27 H 0.078 0.922 28 O -0.374 6.374 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.242 0.758 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.719 22.994 5.790 24.646 hybrid contribution -0.146 -0.896 -0.903 1.281 sum 6.574 22.098 4.887 23.567 Atomic orbital electron populations 1.20904 0.91249 1.03099 1.02534 1.19808 0.96082 0.92601 0.99687 1.21016 0.94274 0.97389 1.01207 1.21109 0.94327 0.97990 1.00720 1.21125 0.99810 0.92553 1.00845 1.21108 0.93641 0.98278 0.99968 1.19815 0.93685 0.94601 0.99940 1.20373 1.00827 0.93541 0.95755 1.21609 1.01333 0.95382 0.98943 1.20657 0.79382 0.86715 0.83870 1.90709 1.56999 1.63050 1.31492 1.45815 1.57276 1.23838 1.09118 1.22322 0.94044 0.83383 0.96984 0.87962 1.21836 0.93325 0.87638 0.96769 1.44294 1.28229 1.01041 1.59220 1.19096 1.08911 0.79952 1.27202 0.90280 1.24793 0.97532 0.98253 1.00015 1.69912 1.16944 1.32413 1.38256 0.86065 0.77633 0.84691 0.77076 1.21538 1.21680 1.20667 1.21852 0.92366 0.85150 0.97736 1.23506 0.93462 0.96658 0.85627 0.92176 1.86248 1.50328 1.81711 1.19078 0.91023 0.90786 0.91685 0.86257 0.86329 0.86224 0.85919 0.90134 0.89800 0.89051 0.88881 0.75830 0.95712 0.93793 0.93734 0.92699 0.92923 0.77316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.38 36.01 0.34 -0.60 16 2 C -0.08 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 5 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 6 C -0.11 -1.05 9.68 -39.59 -0.38 -1.44 16 7 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 8 C -0.07 -0.72 4.13 -27.88 -0.12 -0.84 16 9 C -0.13 -1.39 5.68 -27.88 -0.16 -1.55 16 10 C 0.51 7.50 7.83 -10.98 -0.09 7.41 16 11 O -0.54 -10.17 15.67 5.56 0.09 -10.08 16 12 N -0.71 -10.67 5.18 -51.73 -0.27 -10.94 16 13 C 0.14 2.57 3.25 -65.79 -0.21 2.36 16 14 H 0.10 2.03 7.64 -51.93 -0.40 1.64 16 15 C 0.13 2.92 6.92 -2.51 -0.02 2.90 16 16 N -0.60 -15.60 3.40 -170.04 -0.58 -16.18 16 17 C -0.22 -6.34 10.28 -15.06 -0.15 -6.49 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.93 -26.93 10.31 55.49 0.57 -26.36 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.15 3.63 5.14 -3.06 -0.02 3.61 16 26 C 0.07 1.21 4.20 -24.90 -0.10 1.10 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.93 12.14 -35.23 -0.43 -9.36 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 6.03 -51.93 -0.31 0.30 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 37 H 0.08 0.94 6.12 -51.93 -0.32 0.62 16 38 H 0.09 0.81 7.92 -51.93 -0.41 0.39 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.41 5.37 7.57 -40.82 -0.31 5.06 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 45 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 46 H 0.38 4.61 9.12 45.56 0.42 5.03 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -33.32 374.74 -9.62 -42.94 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.29 Total: 7.93 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.34 Total: -0.89 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.27 Total: -53.47 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.34 Total: -19.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.32 -9.62 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220422100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.671 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds