Wall clock time and date at job start Tue Mar 31 2020 12:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 7 7 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 8 8 C 1.50706 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.46584 * 85.00560 * 8 7 2 10 10 C 1.50706 * 109.46584 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99708 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00050 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.88716 * 34.30172 * 13 12 10 15 15 C 1.54905 * 111.00916 * 270.41724 * 13 12 10 16 16 N 1.47459 * 104.81432 * 204.94994 * 15 13 12 17 17 C 1.36942 * 125.63010 * 204.05205 * 16 15 13 18 18 H 1.08001 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00396 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46969 * 89.99682 * 21 19 17 23 23 H 1.48506 * 109.47449 * 209.99755 * 21 19 17 24 24 H 1.48495 * 109.47261 * 329.99619 * 21 19 17 25 25 C 1.47024 * 108.72413 * 24.06851 * 16 15 13 26 26 C 1.54325 * 107.26773 * 358.97316 * 25 16 15 27 27 H 1.09004 * 110.71822 * 219.43991 * 26 25 16 28 28 O 1.42905 * 110.71682 * 96.17408 * 26 25 16 29 29 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 30 30 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 31 31 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 32 32 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 35 35 H 1.07999 * 119.99941 * 180.23499 * 6 5 4 36 36 H 1.09004 * 109.46661 * 205.00021 * 8 7 2 37 37 H 1.08999 * 109.47085 * 325.00239 * 8 7 2 38 38 H 1.08996 * 109.47302 * 299.99401 * 9 8 7 39 39 H 1.08993 * 109.47248 * 60.00179 * 9 8 7 40 40 H 0.97005 * 120.00130 * 359.97438 * 12 10 9 41 41 H 1.09004 * 110.36326 * 323.75384 * 15 13 12 42 42 H 1.09003 * 110.36515 * 86.07031 * 15 13 12 43 43 H 0.97003 * 120.00464 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.87865 * 239.55612 * 25 16 15 45 45 H 1.08994 * 110.00996 * 118.46638 * 25 16 15 46 46 H 0.96701 * 113.99797 * 66.46955 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 6 3.5807 -1.1970 -0.0012 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 1.0802 -2.8805 -1.4376 10 6 0.3272 -4.1860 -1.4376 11 8 0.1043 -4.7575 -0.3914 12 7 -0.0976 -4.7188 -2.6005 13 6 -0.8291 -5.9880 -2.6006 14 1 -1.4549 -6.0761 -1.7124 15 6 0.1424 -7.1889 -2.7167 16 7 -0.6656 -8.2718 -3.3073 17 6 -0.4159 -9.6125 -3.1824 18 1 0.4356 -9.9523 -2.6115 19 6 -1.2565 -10.5346 -3.7906 20 7 -2.2938 -10.1206 -4.4868 21 14 -0.9154 -12.3634 -3.6208 22 1 -1.6160 -12.8883 -2.4213 23 1 -1.4053 -13.0727 -4.8301 24 1 0.5460 -12.5831 -3.4762 25 6 -1.7831 -7.6742 -4.0526 26 6 -1.6734 -6.1431 -3.8931 27 1 -2.6598 -5.6971 -3.7654 28 8 -0.9967 -5.5655 -5.0114 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 -0.0001 -0.0115 35 1 4.1206 -2.1323 -0.0021 36 1 2.0697 -3.2825 0.4334 37 1 0.5340 -2.3959 0.5892 38 1 0.4552 -2.1002 -1.8715 39 1 1.9907 -2.9867 -2.0273 40 1 0.0810 -4.2618 -3.4373 41 1 0.9777 -6.9392 -3.3709 42 1 0.5054 -7.4798 -1.7309 43 1 -2.8815 -10.7650 -4.9115 44 1 -2.7308 -8.0228 -3.6422 45 1 -1.7145 -7.9430 -5.1067 46 1 -1.4826 -5.6362 -5.8445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220422100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:05 Heat of formation + Delta-G solvation = -67.329507 kcal Electronic energy + Delta-G solvation = -26187.300372 eV Core-core repulsion = 22462.035114 eV Total energy + Delta-G solvation = -3725.265258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15048 -40.36005 -39.37919 -36.46115 -35.44337 -35.10361 -33.61173 -33.27506 -31.04952 -30.09522 -28.77105 -27.76908 -26.55922 -25.27397 -22.85978 -22.41688 -21.86821 -21.39504 -21.04029 -19.23992 -18.35009 -18.04222 -17.11552 -16.95560 -16.86600 -16.65609 -15.98968 -15.82237 -15.69628 -15.33654 -14.80608 -14.62200 -14.49895 -14.39165 -14.14306 -13.96325 -13.76263 -13.62685 -13.27105 -13.19460 -13.06004 -12.81469 -12.75530 -12.60017 -12.28814 -12.13384 -12.11391 -11.92979 -11.87637 -11.73258 -11.58412 -10.94566 -10.83105 -10.77514 -10.05039 -9.64951 -9.42421 -8.96070 -7.90000 -5.25940 0.47824 0.53406 1.44295 1.46353 1.54892 1.66497 2.14712 2.48250 2.90072 3.18509 3.28965 3.57782 3.73466 3.85683 3.92920 3.96587 4.04652 4.11535 4.15822 4.26413 4.28883 4.35490 4.48794 4.50924 4.64269 4.66471 4.69877 4.82162 4.83744 4.90556 4.98103 5.02972 5.07000 5.12035 5.25863 5.34847 5.42558 5.45193 5.52635 5.64042 5.65078 5.67900 5.83136 6.13412 6.19268 6.64642 6.87739 7.05468 7.32157 7.69572 8.33181 9.19881 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.002332 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.575727 B =12004.177613 C =12465.176946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.062 4.062 9 C -0.119 4.119 10 C 0.507 3.493 11 O -0.586 6.586 12 N -0.698 5.698 13 C 0.151 3.849 14 H 0.089 0.911 15 C 0.132 3.868 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.272 1.272 25 C 0.159 3.841 26 C 0.093 3.907 27 H 0.092 0.908 28 O -0.563 6.563 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.419 0.581 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.250 0.750 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 25.731 4.170 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.093 4.093 8 C -0.099 4.099 9 C -0.159 4.159 10 C 0.296 3.704 11 O -0.467 6.467 12 N -0.350 5.350 13 C 0.044 3.956 14 H 0.107 0.893 15 C 0.005 3.995 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.197 1.197 25 C 0.034 3.966 26 C 0.032 3.968 27 H 0.110 0.890 28 O -0.372 6.372 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.257 0.743 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.045 0.955 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.362 25.276 5.267 26.848 hybrid contribution -0.285 -1.549 -0.737 1.739 sum 7.077 23.727 4.530 25.171 Atomic orbital electron populations 1.20926 0.90438 1.03252 1.03137 1.20017 0.96849 0.92644 0.99608 1.21304 0.94669 0.97876 1.00720 1.21441 0.94512 0.98781 0.99713 1.21388 1.00833 0.92387 1.00494 1.21271 0.93706 0.99005 1.00409 1.19764 0.93910 0.94320 1.01350 1.20259 1.00286 0.93762 0.95624 1.21594 1.01695 0.93225 0.99356 1.21417 0.78557 0.87584 0.82854 1.90699 1.58514 1.64467 1.32992 1.45677 1.56872 1.22422 1.10071 1.21892 0.93137 0.83631 0.96936 0.89295 1.21887 0.93842 0.88375 0.95380 1.44582 1.29308 1.01215 1.59825 1.19410 1.09110 0.81671 1.27397 0.90633 1.25621 0.97496 1.02428 0.99916 1.70111 1.17460 1.33415 1.38684 0.85054 0.77818 0.79448 0.76847 1.21210 1.21516 1.19722 1.21723 0.90321 0.89072 0.95507 1.23118 0.94915 0.92719 0.86008 0.89036 1.86210 1.50678 1.80742 1.19572 0.90119 0.91715 0.90491 0.84398 0.84189 0.84568 0.85667 0.91773 0.90647 0.86519 0.87205 0.74301 0.95791 0.95537 0.94097 0.95803 0.95539 0.75096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.38 71.24 0.67 -0.98 16 2 C -0.09 -1.51 5.88 -19.87 -0.12 -1.63 16 3 C -0.13 -1.85 9.70 22.27 0.22 -1.64 16 4 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 5 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 6 C -0.13 -2.23 9.68 22.27 0.22 -2.02 16 7 C -0.09 -1.74 5.13 -19.86 -0.10 -1.84 16 8 C -0.06 -1.28 4.13 29.85 0.12 -1.16 16 9 C -0.12 -2.29 5.68 29.85 0.17 -2.12 16 10 C 0.51 14.47 7.83 87.66 0.69 15.16 16 11 O -0.59 -22.06 15.67 -3.03 -0.05 -22.10 16 12 N -0.70 -19.89 5.18 -435.97 -2.26 -22.14 16 13 C 0.15 5.54 3.25 46.38 0.15 5.69 16 14 H 0.09 3.55 7.64 -2.38 -0.02 3.53 16 15 C 0.13 5.95 6.92 86.85 0.60 6.55 16 16 N -0.62 -33.11 3.40 -691.90 -2.35 -35.46 16 17 C -0.25 -14.36 10.28 84.03 0.86 -13.50 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 19 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 20 N -0.95 -56.25 10.31 21.65 0.22 -56.03 16 21 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.16 7.61 5.14 86.73 0.45 8.06 16 26 C 0.09 3.20 4.20 31.78 0.13 3.33 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 28 O -0.56 -16.36 12.14 -148.98 -1.81 -18.16 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.00 6.03 -2.39 -0.01 0.99 16 31 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.06 1.52 8.01 -2.38 -0.02 1.50 16 37 H 0.08 1.68 6.12 -2.39 -0.01 1.67 16 38 H 0.12 1.70 7.92 -2.39 -0.02 1.68 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.42 9.91 7.57 -92.70 -0.70 9.21 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.02 1.27 7.38 -2.39 -0.02 1.25 16 45 H 0.03 1.39 7.43 -2.39 -0.02 1.37 16 46 H 0.40 8.61 9.12 -74.06 -0.68 7.93 16 Total: -1.00 -73.81 374.74 0.38 -73.43 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.38 Total: 24.53 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.97 Total: 7.53 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -4.38 Total: -113.63 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.86 Total: -40.27 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -73.81 0.38 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220422100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.101 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds