Wall clock time and date at job start Tue Mar 31 2020 12:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48499 * 109.46964 * 269.99660 * 3 2 1 5 5 H 1.48498 * 109.46936 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47063 * 150.00241 * 3 2 1 7 7 C 1.37874 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47517 * 179.97438 * 9 7 2 11 11 O 1.21279 * 119.99568 * 0.02562 * 10 9 7 12 12 N 1.34771 * 119.99877 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99580 * 184.99505 * 12 10 9 14 14 H 1.08992 * 110.45389 * 323.86893 * 13 12 10 15 15 C 1.55931 * 110.40164 * 201.47728 * 13 12 10 16 16 H 1.08993 * 115.92235 * 41.24615 * 15 13 12 17 17 C 1.55929 * 104.49841 * 170.93388 * 15 13 12 18 18 C 1.54584 * 104.64380 * 70.27922 * 17 15 13 19 19 C 1.55936 * 104.64285 * 359.97438 * 18 17 15 20 20 H 1.08998 * 116.52364 * 160.39598 * 19 18 17 21 21 C 1.56948 * 100.65281 * 274.99019 * 15 13 12 22 22 C 1.54584 * 110.40045 * 86.25850 * 13 12 10 23 23 H 1.09000 * 110.40467 * 237.58227 * 22 13 12 24 24 C 1.50702 * 110.39933 * 359.88282 * 22 13 12 25 25 O 1.21274 * 120.00376 * 67.10057 * 24 22 13 26 26 N 1.34773 * 119.99691 * 247.08907 * 24 22 13 27 27 C 1.46989 * 127.25525 * 354.62011 * 26 24 22 28 28 C 1.50586 * 107.13324 * 179.90987 * 27 26 24 29 29 C 1.30391 * 110.12254 * 0.36491 * 28 27 26 30 30 C 1.46988 * 127.25309 * 174.92793 * 26 24 22 31 31 H 0.96995 * 119.99637 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47209 * 59.99883 * 9 7 2 33 33 H 1.09000 * 109.46798 * 299.99903 * 9 7 2 34 34 H 0.96997 * 120.00555 * 5.00554 * 12 10 9 35 35 H 1.08992 * 110.40415 * 189.06843 * 17 15 13 36 36 H 1.09001 * 110.40173 * 311.49409 * 17 15 13 37 37 H 1.09002 * 110.40037 * 241.21307 * 18 17 15 38 38 H 1.08993 * 110.50253 * 118.84195 * 18 17 15 39 39 H 1.09000 * 112.02762 * 63.17047 * 21 15 13 40 40 H 1.09001 * 112.02751 * 189.61843 * 21 15 13 41 41 H 1.09004 * 109.90199 * 299.40502 * 27 26 24 42 42 H 1.08993 * 109.90753 * 60.65250 * 27 26 24 43 43 H 1.08010 * 124.94060 * 180.14350 * 28 27 26 44 44 H 1.07997 * 124.94398 * 179.79382 * 29 28 27 45 45 H 1.09001 * 109.90367 * 299.34552 * 30 26 24 46 46 H 1.09000 * 109.90111 * 60.41526 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9152 0.0011 13 6 2.7286 -6.0271 0.1115 14 1 3.6496 -5.7973 -0.4241 15 6 2.0926 -7.3400 -0.4392 16 1 1.5064 -7.2389 -1.3525 17 6 3.2723 -8.3588 -0.4780 18 6 3.5744 -8.6639 1.0070 19 6 2.5490 -7.8001 1.8033 20 1 2.3582 -8.0983 2.8342 21 6 1.3178 -7.8417 0.8302 22 6 3.0306 -6.3322 1.5966 23 1 4.1001 -6.2523 1.7911 24 6 2.2633 -5.3939 2.4922 25 8 1.0536 -5.4603 2.5459 26 7 2.9216 -4.4811 3.2336 27 6 4.3771 -4.3326 3.3760 28 6 4.6158 -3.1724 4.3058 29 6 3.4781 -2.6703 4.6978 30 6 2.3354 -3.4282 4.0752 31 1 -0.4849 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 0.8304 -5.0936 -0.0719 35 1 2.9724 -9.2679 -0.9992 36 1 4.1432 -7.9136 -0.9591 37 1 4.5937 -8.3686 1.2559 38 1 3.4242 -9.7228 1.2174 39 1 0.5346 -7.1465 1.1324 40 1 0.9314 -8.8526 0.7003 41 1 4.8034 -5.2427 3.7982 42 1 4.8258 -4.1257 2.4045 43 1 5.5880 -2.8111 4.6073 44 1 3.3708 -1.8326 5.3709 45 1 1.7339 -2.7559 3.4632 46 1 1.7164 -3.8761 4.8525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:12 Heat of formation + Delta-G solvation = -37.148466 kcal Electronic energy + Delta-G solvation = -28745.231438 eV Core-core repulsion = 25021.274929 eV Total energy + Delta-G solvation = -3723.956509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19834 -39.26866 -38.07761 -37.08212 -33.47307 -32.86500 -31.95904 -30.17251 -29.35365 -28.46211 -28.23296 -27.33025 -24.47426 -23.54238 -22.08160 -20.27982 -19.78666 -19.47992 -19.26425 -18.43283 -17.18012 -16.41460 -16.25539 -15.91037 -15.60282 -15.20508 -14.83457 -14.43180 -14.25640 -14.10119 -13.97830 -13.55111 -13.12773 -12.61765 -12.58514 -12.39610 -12.27639 -12.03314 -11.88414 -11.50713 -11.38711 -11.26885 -11.22428 -11.09978 -10.98058 -10.87418 -10.78915 -10.69932 -10.55234 -10.26289 -9.90853 -9.47196 -9.37241 -9.21821 -8.58720 -8.41830 -8.33130 -8.09298 -6.00594 -3.99901 2.25519 2.92412 3.18143 3.35362 3.40659 3.46893 3.76131 3.95019 4.36447 4.46587 4.47251 4.55198 4.67376 4.77328 5.06220 5.11031 5.19397 5.24930 5.29566 5.33368 5.37272 5.42628 5.51896 5.55250 5.71818 5.75494 5.79361 5.82389 5.86736 5.89941 5.99195 6.04825 6.07662 6.09483 6.26587 6.35225 6.40020 6.44901 6.51123 6.86672 7.15698 7.29719 7.42529 7.82688 8.00125 8.14634 8.50337 8.52307 9.10250 9.31145 9.64411 11.11789 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.005155 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.650437 B = 5430.315498 C = 6555.859844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.007 3.993 10 C 0.518 3.482 11 O -0.547 6.547 12 N -0.739 5.739 13 C 0.163 3.837 14 H 0.091 0.909 15 C -0.109 4.109 16 H 0.106 0.894 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.083 4.083 20 H 0.098 0.902 21 C -0.126 4.126 22 C -0.119 4.119 23 H 0.087 0.913 24 C 0.560 3.440 25 O -0.533 6.533 26 N -0.613 5.613 27 C 0.126 3.874 28 C -0.174 4.174 29 C -0.156 4.156 30 C 0.127 3.873 31 H 0.260 0.740 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.087 0.913 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -16.711 6.079 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.091 0.909 9 C -0.032 4.032 10 C 0.308 3.692 11 O -0.424 6.424 12 N -0.392 5.392 13 C 0.056 3.944 14 H 0.109 0.891 15 C -0.128 4.128 16 H 0.124 0.876 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.102 4.102 20 H 0.116 0.884 21 C -0.164 4.164 22 C -0.142 4.142 23 H 0.105 0.895 24 C 0.349 3.651 25 O -0.409 6.409 26 N -0.347 5.347 27 C 0.003 3.997 28 C -0.192 4.192 29 C -0.174 4.174 30 C 0.005 3.995 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.234 0.766 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.105 0.895 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.995 -16.508 6.044 18.920 hybrid contribution 0.135 1.071 0.041 1.081 sum 7.129 -15.437 6.084 18.060 Atomic orbital electron populations 1.69973 1.05995 1.26717 1.51249 1.24994 0.94843 0.99302 0.95432 0.86485 0.79822 0.82967 0.78129 1.20680 1.21326 1.19774 1.21113 0.94032 0.89076 1.49822 0.90900 1.19193 0.94164 0.90623 0.99240 1.21955 0.91009 0.83476 0.72718 1.90493 1.17893 1.84711 1.49282 1.46363 1.10105 1.05499 1.77230 1.21787 0.94244 0.86528 0.91806 0.89066 1.23835 0.96613 0.93831 0.98484 0.87596 1.22576 0.97927 0.98735 0.96401 1.22638 0.98701 0.99482 0.94949 1.23406 0.95903 0.92032 0.98877 0.88383 1.23739 0.97459 1.01303 0.93869 1.22972 1.00149 0.94743 0.96325 0.89483 1.19707 0.87432 0.79607 0.78321 1.90625 1.13816 1.70708 1.65740 1.48077 1.07297 1.32356 1.47008 1.20780 0.81959 0.97090 0.99898 1.23139 0.99118 0.97980 0.98978 1.23261 0.94453 0.99684 1.00026 1.20711 0.95642 0.89343 0.93793 0.93007 0.93930 0.93604 0.76591 0.91412 0.91423 0.91641 0.91493 0.89077 0.91298 0.91287 0.89791 0.84038 0.83933 0.89475 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.50 -14.74 8.92 -34.44 -0.31 -15.05 16 8 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 9 C 0.01 0.19 5.46 -29.03 -0.16 0.03 16 10 C 0.52 12.02 6.94 -10.99 -0.08 11.94 16 11 O -0.55 -13.85 15.14 5.56 0.08 -13.77 16 12 N -0.74 -13.60 3.52 -51.49 -0.18 -13.78 16 13 C 0.16 2.45 2.56 -65.53 -0.17 2.29 16 14 H 0.09 1.49 7.29 -51.93 -0.38 1.11 16 15 C -0.11 -1.26 4.74 -85.35 -0.40 -1.67 16 16 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.12 -1.12 6.21 -24.33 -0.15 -1.27 16 18 C -0.12 -1.09 6.21 -24.33 -0.15 -1.25 16 19 C -0.08 -0.95 4.48 -85.36 -0.38 -1.34 16 20 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 21 C -0.13 -1.48 6.26 -22.43 -0.14 -1.63 16 22 C -0.12 -1.69 2.58 -89.41 -0.23 -1.92 16 23 H 0.09 1.16 6.63 -51.93 -0.34 0.81 16 24 C 0.56 9.74 5.16 -10.99 -0.06 9.68 16 25 O -0.53 -10.51 14.71 5.56 0.08 -10.43 16 26 N -0.61 -10.38 3.37 -175.77 -0.59 -10.97 16 27 C 0.13 1.79 5.98 -4.98 -0.03 1.76 16 28 C -0.17 -2.26 10.86 -35.91 -0.39 -2.65 16 29 C -0.16 -2.17 10.87 -35.91 -0.39 -2.56 16 30 C 0.13 2.13 7.00 -4.98 -0.03 2.10 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.40 7.04 8.57 -40.82 -0.35 6.69 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 7.83 -51.93 -0.41 0.24 16 37 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.30 6.46 -51.93 -0.34 0.97 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 43 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 44 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -34.02 365.91 -9.75 -43.78 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.21 Total: 8.55 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.17 Total: -0.02 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.04 Total: -50.95 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.02 -9.75 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.629 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds