Wall clock time and date at job start Tue Mar 31 2020 12:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48499 * 109.46964 * 269.99660 * 3 2 1 5 5 H 1.48498 * 109.46936 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47063 * 150.00241 * 3 2 1 7 7 C 1.37874 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47517 * 179.97438 * 9 7 2 11 11 O 1.21279 * 119.99568 * 0.02562 * 10 9 7 12 12 N 1.34771 * 119.99877 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99580 * 184.99505 * 12 10 9 14 14 H 1.08992 * 110.45389 * 323.86893 * 13 12 10 15 15 C 1.55931 * 110.40164 * 201.47728 * 13 12 10 16 16 H 1.08993 * 115.92235 * 41.24615 * 15 13 12 17 17 C 1.55929 * 104.49841 * 170.93388 * 15 13 12 18 18 C 1.54584 * 104.64380 * 70.27922 * 17 15 13 19 19 C 1.55936 * 104.64285 * 359.97438 * 18 17 15 20 20 H 1.08998 * 116.52364 * 160.39598 * 19 18 17 21 21 C 1.56948 * 100.65281 * 274.99019 * 15 13 12 22 22 C 1.54584 * 110.40045 * 86.25850 * 13 12 10 23 23 H 1.09000 * 110.40467 * 237.58227 * 22 13 12 24 24 C 1.50702 * 110.39933 * 359.88282 * 22 13 12 25 25 O 1.21274 * 120.00376 * 67.10057 * 24 22 13 26 26 N 1.34773 * 119.99691 * 247.08907 * 24 22 13 27 27 C 1.46989 * 127.25525 * 354.62011 * 26 24 22 28 28 C 1.50586 * 107.13324 * 179.90987 * 27 26 24 29 29 C 1.30391 * 110.12254 * 0.36491 * 28 27 26 30 30 C 1.46988 * 127.25309 * 174.92793 * 26 24 22 31 31 H 0.96995 * 119.99637 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47209 * 59.99883 * 9 7 2 33 33 H 1.09000 * 109.46798 * 299.99903 * 9 7 2 34 34 H 0.96997 * 120.00555 * 5.00554 * 12 10 9 35 35 H 1.08992 * 110.40415 * 189.06843 * 17 15 13 36 36 H 1.09001 * 110.40173 * 311.49409 * 17 15 13 37 37 H 1.09002 * 110.40037 * 241.21307 * 18 17 15 38 38 H 1.08993 * 110.50253 * 118.84195 * 18 17 15 39 39 H 1.09000 * 112.02762 * 63.17047 * 21 15 13 40 40 H 1.09001 * 112.02751 * 189.61843 * 21 15 13 41 41 H 1.09004 * 109.90199 * 299.40502 * 27 26 24 42 42 H 1.08993 * 109.90753 * 60.65250 * 27 26 24 43 43 H 1.08010 * 124.94060 * 180.14350 * 28 27 26 44 44 H 1.07997 * 124.94398 * 179.79382 * 29 28 27 45 45 H 1.09001 * 109.90367 * 299.34552 * 30 26 24 46 46 H 1.09000 * 109.90111 * 60.41526 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9152 0.0011 13 6 2.7286 -6.0271 0.1115 14 1 3.6496 -5.7973 -0.4241 15 6 2.0926 -7.3400 -0.4392 16 1 1.5064 -7.2389 -1.3525 17 6 3.2723 -8.3588 -0.4780 18 6 3.5744 -8.6639 1.0070 19 6 2.5490 -7.8001 1.8033 20 1 2.3582 -8.0983 2.8342 21 6 1.3178 -7.8417 0.8302 22 6 3.0306 -6.3322 1.5966 23 1 4.1001 -6.2523 1.7911 24 6 2.2633 -5.3939 2.4922 25 8 1.0536 -5.4603 2.5459 26 7 2.9216 -4.4811 3.2336 27 6 4.3771 -4.3326 3.3760 28 6 4.6158 -3.1724 4.3058 29 6 3.4781 -2.6703 4.6978 30 6 2.3354 -3.4282 4.0752 31 1 -0.4849 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 0.8304 -5.0936 -0.0719 35 1 2.9724 -9.2679 -0.9992 36 1 4.1432 -7.9136 -0.9591 37 1 4.5937 -8.3686 1.2559 38 1 3.4242 -9.7228 1.2174 39 1 0.5346 -7.1465 1.1324 40 1 0.9314 -8.8526 0.7003 41 1 4.8034 -5.2427 3.7982 42 1 4.8258 -4.1257 2.4045 43 1 5.5880 -2.8111 4.6073 44 1 3.3708 -1.8326 5.3709 45 1 1.7339 -2.7559 3.4632 46 1 1.7164 -3.8761 4.8525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:11 Heat of formation + Delta-G solvation = -58.921857 kcal Electronic energy + Delta-G solvation = -28746.175603 eV Core-core repulsion = 25021.274929 eV Total energy + Delta-G solvation = -3724.900675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39586 -40.49715 -39.81533 -38.38483 -35.17270 -34.98533 -33.21631 -31.52478 -30.94088 -29.62338 -29.50827 -28.48653 -25.97109 -25.34460 -23.32538 -21.49558 -21.18697 -20.65146 -20.44974 -19.60166 -18.65060 -18.33594 -17.76479 -17.31474 -17.06285 -16.64876 -16.30287 -15.84645 -15.74502 -15.59280 -15.30271 -14.69877 -14.59738 -14.27434 -14.18481 -13.88755 -13.61797 -13.40594 -13.35483 -12.92754 -12.81359 -12.61414 -12.52089 -12.32036 -12.24317 -12.08574 -12.04248 -12.00840 -11.78138 -11.71554 -11.49504 -11.17114 -10.73759 -10.66555 -10.65416 -10.44667 -9.96332 -9.38814 -8.26910 -6.35572 1.17078 1.36134 1.38063 1.50354 1.56050 1.85270 1.95709 2.31414 2.49869 3.07844 3.33498 3.41722 3.50001 3.65790 3.67591 3.94850 4.09646 4.15267 4.28595 4.32113 4.33928 4.34784 4.46645 4.49757 4.52568 4.60876 4.62041 4.66804 4.82073 4.86190 4.98076 5.02016 5.05521 5.13613 5.17439 5.18930 5.22137 5.24893 5.34484 5.43742 5.46977 5.60499 5.72940 5.78246 6.01094 6.53001 6.65257 6.80285 7.14690 7.30602 7.48606 8.85852 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.005155 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.650437 B = 5430.315498 C = 6555.859844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.525 3.475 11 O -0.570 6.570 12 N -0.723 5.723 13 C 0.154 3.846 14 H 0.082 0.918 15 C -0.102 4.102 16 H 0.112 0.888 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.079 4.079 20 H 0.102 0.898 21 C -0.125 4.125 22 C -0.116 4.116 23 H 0.098 0.902 24 C 0.547 3.453 25 O -0.567 6.567 26 N -0.623 5.623 27 C 0.118 3.882 28 C -0.159 4.159 29 C -0.172 4.172 30 C 0.123 3.877 31 H 0.266 0.734 32 H 0.029 0.971 33 H 0.019 0.981 34 H 0.403 0.597 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.037 0.963 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -18.274 6.323 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.026 4.026 10 C 0.314 3.686 11 O -0.449 6.449 12 N -0.374 5.374 13 C 0.049 3.951 14 H 0.100 0.900 15 C -0.121 4.121 16 H 0.130 0.870 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.097 4.097 20 H 0.120 0.880 21 C -0.163 4.163 22 C -0.138 4.138 23 H 0.116 0.884 24 C 0.338 3.662 25 O -0.446 6.446 26 N -0.357 5.357 27 C -0.004 4.004 28 C -0.177 4.177 29 C -0.190 4.190 30 C 0.000 4.000 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.238 0.762 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.196 0.804 44 H 0.184 0.816 45 H 0.056 0.944 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.210 -18.115 6.288 21.273 hybrid contribution -0.625 1.527 -0.035 1.651 sum 8.585 -16.588 6.254 19.697 Atomic orbital electron populations 1.70078 1.07457 1.28018 1.51243 1.25869 0.95787 1.02983 0.94443 0.85414 0.78508 0.78263 0.78680 1.19551 1.19976 1.19413 1.21253 0.93479 0.90705 1.50962 0.92398 1.18970 0.94326 0.92095 0.97257 1.21186 0.89801 0.84403 0.73206 1.90463 1.18242 1.85344 1.50880 1.46145 1.10977 1.05001 1.75292 1.22161 0.93291 0.86708 0.92975 0.90029 1.23882 0.97610 0.92042 0.98543 0.86981 1.22587 0.96647 0.98714 0.97070 1.22632 0.98156 1.00242 0.93854 1.23468 0.96494 0.90287 0.99496 0.88022 1.23707 0.96840 1.01839 0.93892 1.23032 1.00352 0.95908 0.94525 0.88359 1.20429 0.87421 0.79961 0.78424 1.90603 1.15361 1.71850 1.66793 1.48341 1.08738 1.31867 1.46730 1.21011 0.80272 0.99476 0.99610 1.23516 1.00323 0.96623 0.97229 1.23366 0.93442 1.00781 1.01425 1.20688 0.96848 0.89157 0.93258 0.92500 0.95297 0.96314 0.76221 0.89022 0.91319 0.90809 0.89099 0.92252 0.88752 0.87782 0.91643 0.80386 0.81583 0.94446 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 46.35 29.54 68.60 2.03 48.37 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.53 -32.19 8.92 25.60 0.23 -31.96 16 8 H 0.06 3.67 6.75 -2.91 -0.02 3.65 16 9 C 0.01 0.74 5.46 29.10 0.16 0.90 16 10 C 0.52 25.60 6.94 87.66 0.61 26.21 16 11 O -0.57 -29.92 15.14 -3.03 -0.05 -29.97 16 12 N -0.72 -27.76 3.52 -435.22 -1.53 -29.29 16 13 C 0.15 4.61 2.56 46.54 0.12 4.72 16 14 H 0.08 2.63 7.29 -2.39 -0.02 2.62 16 15 C -0.10 -2.19 4.74 -7.38 -0.04 -2.22 16 16 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.11 -1.72 6.21 32.15 0.20 -1.52 16 18 C -0.11 -1.60 6.21 32.15 0.20 -1.40 16 19 C -0.08 -1.64 4.48 -7.39 -0.03 -1.67 16 20 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 21 C -0.13 -2.75 6.26 33.38 0.21 -2.55 16 22 C -0.12 -3.21 2.58 -10.01 -0.03 -3.24 16 23 H 0.10 2.48 6.63 -2.39 -0.02 2.47 16 24 C 0.55 19.64 5.16 87.66 0.45 20.09 16 25 O -0.57 -23.64 14.71 -3.01 -0.04 -23.69 16 26 N -0.62 -21.76 3.37 -828.40 -2.79 -24.55 16 27 C 0.12 3.29 5.98 85.50 0.51 3.80 16 28 C -0.16 -3.88 10.86 26.24 0.29 -3.60 16 29 C -0.17 -4.75 10.87 26.24 0.29 -4.46 16 30 C 0.12 4.39 7.00 85.51 0.60 4.99 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.40 15.02 8.57 -92.71 -0.79 14.22 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.08 7.83 -2.39 -0.02 1.06 16 37 H 0.07 0.98 7.83 -2.39 -0.02 0.96 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.72 6.46 -2.39 -0.02 1.70 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 43 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -77.91 365.91 2.31 -75.60 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.19 Total: 31.32 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 4.22 Total: 8.99 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.04 Total: -110.63 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.09 Total: -53.65 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.91 2.31 -75.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.680 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds