Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00026 * 2 1 4 4 H 1.48499 * 109.46765 * 240.00082 * 3 2 1 5 5 H 1.48502 * 109.46684 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47182 * 119.99770 * 3 2 1 7 7 C 1.37873 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.50710 * 109.47081 * 180.02562 * 9 7 2 11 11 O 1.21275 * 119.99967 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99957 * 180.02562 * 10 9 7 13 13 C 1.46841 * 120.38483 * 179.97438 * 12 10 9 14 14 C 1.53349 * 108.81293 * 123.11054 * 13 12 10 15 15 C 1.53180 * 108.76554 * 51.32179 * 14 13 12 16 16 C 1.52841 * 117.65885 * 90.01672 * 15 14 13 17 17 C 1.52821 * 117.71563 * 158.87878 * 15 14 13 18 18 H 1.09000 * 117.50159 * 359.85332 * 17 15 14 19 19 C 1.50700 * 117.52735 * 144.91473 * 17 15 14 20 20 O 1.21280 * 120.00275 * 64.29477 * 19 17 15 21 21 N 1.34775 * 119.99868 * 244.30128 * 19 17 15 22 22 C 1.46987 * 127.25424 * 359.68202 * 21 19 17 23 23 C 1.50587 * 107.13582 * 179.91303 * 22 21 19 24 24 C 1.30394 * 110.12021 * 0.37075 * 23 22 21 25 25 C 1.46985 * 127.25745 * 179.97438 * 21 19 17 26 26 C 1.53191 * 115.07632 * 304.54609 * 15 14 13 27 27 C 1.46842 * 120.38122 * 0.02562 * 12 10 9 28 28 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46772 * 60.00762 * 9 7 2 30 30 H 1.08997 * 109.47629 * 299.99971 * 9 7 2 31 31 H 1.08999 * 109.57929 * 3.31710 * 13 12 10 32 32 H 1.08995 * 109.69514 * 242.98312 * 13 12 10 33 33 H 1.08997 * 109.59308 * 291.53528 * 14 13 12 34 34 H 1.09006 * 109.70931 * 171.17433 * 14 13 12 35 35 H 1.08996 * 117.50264 * 0.23831 * 16 15 14 36 36 H 1.09006 * 117.50531 * 215.18928 * 16 15 14 37 37 H 1.09001 * 109.89975 * 299.41419 * 22 21 19 38 38 H 1.09001 * 109.90669 * 60.65463 * 22 21 19 39 39 H 1.08001 * 124.93908 * 180.14220 * 23 22 21 40 40 H 1.07990 * 124.94158 * 179.75719 * 24 23 22 41 41 H 1.08998 * 109.90668 * 299.34472 * 25 21 19 42 42 H 1.09008 * 109.90273 * 60.58595 * 25 21 19 43 43 H 1.09000 * 109.58802 * 175.22856 * 26 15 14 44 44 H 1.09004 * 109.58599 * 295.66041 * 26 15 14 45 45 H 1.08997 * 109.58393 * 356.68519 * 27 12 10 46 46 H 1.09009 * 109.57772 * 116.95060 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0027 11 8 3.4227 -3.4230 0.0021 12 7 1.7812 -4.9153 0.0033 13 6 2.7279 -6.0377 0.0038 14 6 2.4407 -6.9264 1.2201 15 6 0.9481 -7.2707 1.2374 16 6 0.5024 -8.5323 0.4986 17 6 0.5122 -8.5033 2.0286 18 1 1.2881 -9.0748 2.5379 19 6 -0.8193 -8.4443 2.7320 20 8 -1.8417 -8.3431 2.0875 21 7 -0.8739 -8.5040 4.0773 22 6 0.2558 -8.6326 5.0089 23 6 -0.3175 -8.6535 6.4012 24 6 -1.6172 -8.5608 6.3526 25 6 -2.0761 -8.4601 4.9219 26 6 0.0034 -6.0649 1.2194 27 6 0.3393 -5.1932 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 3.7471 -5.6559 0.0629 32 1 2.6083 -6.6195 -0.9102 33 1 2.7031 -6.3922 2.1332 34 1 3.0264 -7.8432 1.1520 35 1 1.2719 -9.1228 0.0014 36 1 -0.4671 -8.5081 0.0008 37 1 0.7943 -9.5598 4.8133 38 1 0.9267 -7.7806 4.8985 39 1 0.2632 -8.7371 7.3080 40 1 -2.2696 -8.5567 7.2132 41 1 -2.6045 -7.5195 4.7668 42 1 -2.7291 -9.2993 4.6819 43 1 -1.0281 -6.4098 1.1481 44 1 0.1346 -5.4843 2.1325 45 1 -0.2136 -4.2556 0.0607 46 1 0.0694 -5.7201 -0.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = -16.067309 kcal Electronic energy + Delta-G solvation = -26926.473268 eV Core-core repulsion = 23203.430907 eV Total energy + Delta-G solvation = -3723.042362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87563 -39.61577 -38.45891 -37.15877 -34.78084 -32.97333 -32.34256 -31.30648 -29.83500 -29.10783 -28.46534 -25.56935 -24.26564 -23.40075 -22.92185 -22.55175 -20.02082 -19.82790 -19.15857 -17.91101 -17.52917 -16.62357 -16.29412 -15.82938 -15.61202 -15.26587 -14.92777 -14.72772 -14.47148 -14.25989 -13.87908 -13.69447 -13.47827 -13.19076 -12.98846 -12.82270 -12.77007 -12.67724 -12.15794 -11.97923 -11.94079 -11.80414 -11.48095 -11.16147 -11.11973 -10.78131 -10.69061 -10.58851 -10.25058 -10.09997 -10.04478 -9.92406 -9.85718 -9.19045 -8.71607 -8.58583 -8.40915 -8.04165 -6.02992 -4.02552 1.66218 2.26849 2.56204 3.38925 3.40966 3.45949 3.59729 3.68176 3.77186 4.03993 4.19914 4.44774 4.49515 4.53011 4.65098 4.77274 4.86296 4.95623 5.11600 5.18818 5.21909 5.26001 5.31331 5.34982 5.35506 5.45054 5.54725 5.60707 5.72838 5.76858 5.85232 5.87008 5.90169 5.95017 6.04005 6.12986 6.18326 6.27883 6.34225 6.41740 7.07688 7.21433 7.25263 7.34978 7.93878 7.98680 8.01999 8.40548 9.07472 9.23577 9.62284 11.09307 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003052 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.080734 B = 9171.217174 C = 9964.287785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.007 3.993 10 C 0.517 3.483 11 O -0.547 6.547 12 N -0.627 5.627 13 C 0.115 3.885 14 C -0.096 4.096 15 C -0.080 4.080 16 C -0.136 4.136 17 C -0.189 4.189 18 H 0.120 0.880 19 C 0.572 3.428 20 O -0.533 6.533 21 N -0.620 5.620 22 C 0.123 3.877 23 C -0.170 4.170 24 C -0.165 4.165 25 C 0.127 3.873 26 C -0.107 4.107 27 C 0.117 3.883 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -22.685 10.444 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.032 4.032 10 C 0.309 3.691 11 O -0.423 6.423 12 N -0.364 5.364 13 C -0.009 4.009 14 C -0.134 4.134 15 C -0.081 4.081 16 C -0.173 4.173 17 C -0.210 4.210 18 H 0.138 0.862 19 C 0.362 3.638 20 O -0.409 6.409 21 N -0.356 5.356 22 C 0.000 4.000 23 C -0.188 4.188 24 C -0.183 4.183 25 C 0.004 3.996 26 C -0.145 4.145 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.120 -22.348 9.953 24.556 hybrid contribution 0.298 0.638 0.400 0.810 sum -1.821 -21.710 10.353 24.121 Atomic orbital electron populations 1.69947 1.06011 1.26986 1.51091 1.25000 0.94902 0.99421 0.95233 0.86496 0.79393 0.82357 0.78839 1.20134 1.21365 1.20155 1.21145 0.94206 0.89198 1.50180 0.90805 1.19238 0.94165 0.90531 0.99238 1.22051 0.90919 0.83241 0.72852 1.90511 1.18093 1.84117 1.49589 1.48320 1.06128 1.05915 1.75987 1.21337 0.95405 0.87742 0.96373 1.21593 0.91879 0.99880 1.00075 1.21523 0.96528 0.89139 1.00870 1.23134 1.03890 0.99727 0.90556 1.22307 0.96496 1.06402 0.95814 0.86235 1.19196 0.90243 0.75140 0.79195 1.90706 1.36217 1.49688 1.64307 1.48092 1.08561 1.73934 1.04967 1.20844 0.89982 1.02260 0.86919 1.23277 0.96448 1.01600 0.97500 1.23323 0.97025 1.00834 0.97126 1.20731 0.88646 1.02698 0.87483 1.21709 0.98596 0.94468 0.99762 1.21601 0.81587 1.00652 0.96826 0.92863 0.93493 0.93548 0.89043 0.92246 0.90918 0.90917 0.87845 0.87277 0.90388 0.89965 0.83565 0.83586 0.90165 0.90449 0.89629 0.91128 0.88306 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.96 8.92 -34.44 -0.31 -15.27 16 8 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 9 C 0.01 0.19 3.79 -29.03 -0.11 0.08 16 10 C 0.52 12.06 7.68 -10.98 -0.08 11.97 16 11 O -0.55 -14.38 14.84 5.56 0.08 -14.30 16 12 N -0.63 -11.30 2.92 -172.67 -0.50 -11.80 16 13 C 0.11 1.68 6.44 -3.68 -0.02 1.66 16 14 C -0.10 -1.11 5.83 -26.46 -0.15 -1.27 16 15 C -0.08 -0.93 1.94 -154.49 -0.30 -1.23 16 16 C -0.14 -1.39 9.45 -26.79 -0.25 -1.65 16 17 C -0.19 -1.95 5.38 -91.84 -0.49 -2.45 16 18 H 0.12 0.97 7.73 -51.93 -0.40 0.57 16 19 C 0.57 7.15 6.81 -10.99 -0.07 7.07 16 20 O -0.53 -8.37 15.30 5.56 0.09 -8.29 16 21 N -0.62 -6.50 3.37 -175.77 -0.59 -7.09 16 22 C 0.12 0.93 6.41 -4.98 -0.03 0.89 16 23 C -0.17 -1.05 10.87 -35.91 -0.39 -1.44 16 24 C -0.16 -1.09 10.87 -35.91 -0.39 -1.48 16 25 C 0.13 1.16 7.00 -4.98 -0.03 1.13 16 26 C -0.11 -1.50 5.24 -26.42 -0.14 -1.64 16 27 C 0.12 1.83 6.36 -3.64 -0.02 1.80 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.05 1.23 7.87 -51.93 -0.41 0.82 16 30 H 0.05 1.22 7.74 -51.93 -0.40 0.82 16 31 H 0.09 1.49 6.96 -51.93 -0.36 1.13 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.26 7.68 -51.93 -0.40 0.86 16 37 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.09 1.24 6.36 -51.93 -0.33 0.91 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.70 5.86 -51.93 -0.30 1.40 16 46 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -35.04 371.74 -9.69 -44.73 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.17 Total: 0.00 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.91 Total: -0.30 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.36 Total: -44.77 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.04 -9.69 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds