Wall clock time and date at job start Tue Mar 31 2020 12:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00026 * 2 1 4 4 H 1.48499 * 109.46765 * 240.00082 * 3 2 1 5 5 H 1.48502 * 109.46684 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47182 * 119.99770 * 3 2 1 7 7 C 1.37873 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.50710 * 109.47081 * 180.02562 * 9 7 2 11 11 O 1.21275 * 119.99967 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99957 * 180.02562 * 10 9 7 13 13 C 1.46841 * 120.38483 * 179.97438 * 12 10 9 14 14 C 1.53349 * 108.81293 * 123.11054 * 13 12 10 15 15 C 1.53180 * 108.76554 * 51.32179 * 14 13 12 16 16 C 1.52841 * 117.65885 * 90.01672 * 15 14 13 17 17 C 1.52821 * 117.71563 * 158.87878 * 15 14 13 18 18 H 1.09000 * 117.50159 * 359.85332 * 17 15 14 19 19 C 1.50700 * 117.52735 * 144.91473 * 17 15 14 20 20 O 1.21280 * 120.00275 * 64.29477 * 19 17 15 21 21 N 1.34775 * 119.99868 * 244.30128 * 19 17 15 22 22 C 1.46987 * 127.25424 * 359.68202 * 21 19 17 23 23 C 1.50587 * 107.13582 * 179.91303 * 22 21 19 24 24 C 1.30394 * 110.12021 * 0.37075 * 23 22 21 25 25 C 1.46985 * 127.25745 * 179.97438 * 21 19 17 26 26 C 1.53191 * 115.07632 * 304.54609 * 15 14 13 27 27 C 1.46842 * 120.38122 * 0.02562 * 12 10 9 28 28 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46772 * 60.00762 * 9 7 2 30 30 H 1.08997 * 109.47629 * 299.99971 * 9 7 2 31 31 H 1.08999 * 109.57929 * 3.31710 * 13 12 10 32 32 H 1.08995 * 109.69514 * 242.98312 * 13 12 10 33 33 H 1.08997 * 109.59308 * 291.53528 * 14 13 12 34 34 H 1.09006 * 109.70931 * 171.17433 * 14 13 12 35 35 H 1.08996 * 117.50264 * 0.23831 * 16 15 14 36 36 H 1.09006 * 117.50531 * 215.18928 * 16 15 14 37 37 H 1.09001 * 109.89975 * 299.41419 * 22 21 19 38 38 H 1.09001 * 109.90669 * 60.65463 * 22 21 19 39 39 H 1.08001 * 124.93908 * 180.14220 * 23 22 21 40 40 H 1.07990 * 124.94158 * 179.75719 * 24 23 22 41 41 H 1.08998 * 109.90668 * 299.34472 * 25 21 19 42 42 H 1.09008 * 109.90273 * 60.58595 * 25 21 19 43 43 H 1.09000 * 109.58802 * 175.22856 * 26 15 14 44 44 H 1.09004 * 109.58599 * 295.66041 * 26 15 14 45 45 H 1.08997 * 109.58393 * 356.68519 * 27 12 10 46 46 H 1.09009 * 109.57772 * 116.95060 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0027 11 8 3.4227 -3.4230 0.0021 12 7 1.7812 -4.9153 0.0033 13 6 2.7279 -6.0377 0.0038 14 6 2.4407 -6.9264 1.2201 15 6 0.9481 -7.2707 1.2374 16 6 0.5024 -8.5323 0.4986 17 6 0.5122 -8.5033 2.0286 18 1 1.2881 -9.0748 2.5379 19 6 -0.8193 -8.4443 2.7320 20 8 -1.8417 -8.3431 2.0875 21 7 -0.8739 -8.5040 4.0773 22 6 0.2558 -8.6326 5.0089 23 6 -0.3175 -8.6535 6.4012 24 6 -1.6172 -8.5608 6.3526 25 6 -2.0761 -8.4601 4.9219 26 6 0.0034 -6.0649 1.2194 27 6 0.3393 -5.1932 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 3.7471 -5.6559 0.0629 32 1 2.6083 -6.6195 -0.9102 33 1 2.7031 -6.3922 2.1332 34 1 3.0264 -7.8432 1.1520 35 1 1.2719 -9.1228 0.0014 36 1 -0.4671 -8.5081 0.0008 37 1 0.7943 -9.5598 4.8133 38 1 0.9267 -7.7806 4.8985 39 1 0.2632 -8.7371 7.3080 40 1 -2.2696 -8.5567 7.2132 41 1 -2.6045 -7.5195 4.7668 42 1 -2.7291 -9.2993 4.6819 43 1 -1.0281 -6.4098 1.1481 44 1 0.1346 -5.4843 2.1325 45 1 -0.2136 -4.2556 0.0607 46 1 0.0694 -5.7201 -0.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:41 Heat of formation + Delta-G solvation = -37.755608 kcal Electronic energy + Delta-G solvation = -26927.413744 eV Core-core repulsion = 23203.430907 eV Total energy + Delta-G solvation = -3723.982837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.81183 -40.86964 -39.60084 -38.29912 -36.16953 -35.16264 -33.08306 -32.60684 -31.27716 -30.30871 -29.70797 -26.41702 -26.02878 -24.67227 -24.05732 -23.66431 -21.11201 -20.64783 -20.05010 -19.11475 -18.64493 -18.43993 -17.60693 -17.10837 -16.90687 -16.55058 -16.30295 -16.18886 -15.67412 -15.29597 -15.00580 -14.82055 -14.56710 -14.39836 -14.20901 -14.12818 -13.85238 -13.76107 -13.35474 -13.23604 -13.18809 -12.91095 -12.77996 -12.62592 -12.57627 -12.31012 -12.24343 -12.00468 -11.84835 -11.41386 -11.20037 -11.03412 -10.84592 -10.69971 -10.64203 -10.46487 -9.53542 -9.41247 -8.26172 -6.34501 1.17969 1.33341 1.38760 1.42186 1.50786 1.80143 1.84103 2.16969 2.43313 2.79036 3.08673 3.32510 3.56722 3.65793 3.68154 3.77117 3.81947 3.96866 4.08056 4.18142 4.26518 4.37488 4.44721 4.46278 4.54416 4.57674 4.61163 4.62547 4.74737 4.84152 4.86881 4.89301 4.94028 4.97831 5.00980 5.04860 5.14758 5.19406 5.22516 5.29036 5.38823 5.64636 5.77659 5.78743 6.04679 6.40828 6.51394 6.78852 7.03289 7.31836 7.45146 8.85819 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003052 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.080734 B = 9171.217174 C = 9964.287785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.517 3.483 11 O -0.583 6.583 12 N -0.615 5.615 13 C 0.108 3.892 14 C -0.082 4.082 15 C -0.092 4.092 16 C -0.124 4.124 17 C -0.175 4.175 18 H 0.153 0.847 19 C 0.560 3.440 20 O -0.577 6.577 21 N -0.625 5.625 22 C 0.113 3.887 23 C -0.162 4.162 24 C -0.172 4.172 25 C 0.117 3.883 26 C -0.097 4.097 27 C 0.115 3.885 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -24.680 11.418 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.026 4.026 10 C 0.308 3.692 11 O -0.463 6.463 12 N -0.349 5.349 13 C -0.014 4.014 14 C -0.120 4.120 15 C -0.093 4.093 16 C -0.161 4.161 17 C -0.196 4.196 18 H 0.171 0.829 19 C 0.351 3.649 20 O -0.457 6.457 21 N -0.358 5.358 22 C -0.009 4.009 23 C -0.179 4.179 24 C -0.190 4.190 25 C -0.005 4.005 26 C -0.135 4.135 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.193 0.807 40 H 0.186 0.814 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.766 -24.400 10.963 26.760 hybrid contribution -0.224 1.197 0.115 1.223 sum -0.991 -23.202 11.078 25.730 Atomic orbital electron populations 1.70035 1.07239 1.28186 1.51007 1.25829 0.95858 1.02858 0.94365 0.85488 0.78354 0.78120 0.79007 1.19627 1.19838 1.19607 1.21368 0.93700 0.91260 1.51408 0.92582 1.19020 0.94246 0.91214 0.98074 1.21456 0.89695 0.84601 0.73401 1.90480 1.18966 1.85050 1.51845 1.48212 1.07747 1.05212 1.73756 1.21660 0.93473 0.86865 0.99397 1.21510 0.92123 1.00689 0.97690 1.21338 0.95868 0.88657 1.03414 1.23230 1.03969 0.98280 0.90604 1.22385 0.95917 1.05137 0.96156 0.82947 1.19681 0.90638 0.74738 0.79840 1.90681 1.37782 1.51826 1.65432 1.48258 1.10063 1.72521 1.04990 1.21127 0.89221 1.03408 0.87132 1.23555 0.96333 1.00345 0.97699 1.23412 0.97746 1.01894 0.95958 1.20847 0.88609 1.01687 0.89385 1.21511 0.99079 0.95208 0.97730 1.21702 0.79925 1.00232 0.98881 0.92374 0.94538 0.94799 0.90745 0.89528 0.92164 0.86658 0.84593 0.88842 0.88113 0.89869 0.80714 0.81351 0.91998 0.90868 0.90350 0.93110 0.90729 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.29 21.45 0.28 -55.33 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -32.82 8.92 25.60 0.23 -32.59 16 8 H 0.06 3.56 6.75 -2.91 -0.02 3.54 16 9 C 0.01 0.75 3.79 29.10 0.11 0.86 16 10 C 0.52 24.96 7.68 87.66 0.67 25.63 16 11 O -0.58 -31.65 14.84 -3.01 -0.04 -31.70 16 12 N -0.62 -22.29 2.92 -818.60 -2.39 -24.68 16 13 C 0.11 2.97 6.44 86.43 0.56 3.53 16 14 C -0.08 -1.66 5.83 30.77 0.18 -1.48 16 15 C -0.09 -1.94 1.94 -52.17 -0.10 -2.04 16 16 C -0.12 -2.15 9.45 30.55 0.29 -1.86 16 17 C -0.18 -3.13 5.38 -11.59 -0.06 -3.19 16 18 H 0.15 1.73 7.73 -2.39 -0.02 1.71 16 19 C 0.56 13.59 6.81 87.66 0.60 14.18 16 20 O -0.58 -18.52 15.30 -3.03 -0.05 -18.56 16 21 N -0.62 -12.53 3.37 -828.40 -2.79 -15.32 16 22 C 0.11 1.42 6.41 85.50 0.55 1.97 16 23 C -0.16 -1.55 10.87 26.24 0.29 -1.27 16 24 C -0.17 -1.98 10.87 26.24 0.29 -1.70 16 25 C 0.12 2.16 7.00 85.51 0.60 2.76 16 26 C -0.10 -2.74 5.24 30.80 0.16 -2.58 16 27 C 0.12 3.67 6.36 86.45 0.55 4.22 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.04 2.02 7.87 -2.39 -0.02 2.00 16 30 H 0.03 1.89 7.74 -2.39 -0.02 1.87 16 31 H 0.07 2.36 6.96 -2.39 -0.02 2.34 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.44 8.11 -2.38 -0.02 1.42 16 35 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.99 7.68 -2.38 -0.02 1.97 16 37 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.17 1.11 8.06 -2.92 -0.02 1.09 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.08 2.36 6.36 -2.39 -0.02 2.34 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.73 5.86 -2.39 -0.01 2.72 16 46 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -79.64 371.74 3.37 -76.27 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.97 Total: 13.64 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.36 Total: 7.45 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.90 Total: -95.32 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.09 Total: -50.26 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.64 3.37 -76.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.518 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds