Wall clock time and date at job start Tue Mar 31 2020 12:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00514 * 2 1 4 4 H 1.48500 * 109.47151 * 240.00035 * 3 2 1 5 5 H 1.48506 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47609 * 119.99716 * 3 2 1 7 7 C 1.37875 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47302 * 179.97438 * 9 7 2 11 11 O 1.21278 * 120.00131 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.46845 * 120.38443 * 179.97438 * 12 10 9 14 14 C 1.53348 * 108.81473 * 236.93086 * 13 12 10 15 15 C 1.53179 * 108.76841 * 308.69211 * 14 13 12 16 16 C 1.52851 * 117.65402 * 269.96545 * 15 14 13 17 17 C 1.52822 * 117.71091 * 201.11644 * 15 14 13 18 18 H 1.09001 * 117.50154 * 0.09965 * 17 15 14 19 19 C 1.50706 * 117.49777 * 215.09360 * 17 15 14 20 20 O 1.21279 * 119.99954 * 267.25874 * 19 17 15 21 21 N 1.34774 * 119.99820 * 87.54329 * 19 17 15 22 22 C 1.46980 * 127.25438 * 359.67859 * 21 19 17 23 23 C 1.50591 * 107.13517 * 179.91523 * 22 21 19 24 24 C 1.30398 * 110.11904 * 0.36736 * 23 22 21 25 25 C 1.46990 * 127.24991 * 179.97438 * 21 19 17 26 26 C 1.53179 * 115.08156 * 55.43879 * 15 14 13 27 27 C 1.46837 * 120.38067 * 0.02760 * 12 10 9 28 28 H 0.97007 * 119.99509 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46844 * 60.00209 * 9 7 2 30 30 H 1.09004 * 109.46955 * 300.00126 * 9 7 2 31 31 H 1.09005 * 109.57719 * 117.13364 * 13 12 10 32 32 H 1.09000 * 109.69399 * 356.80218 * 13 12 10 33 33 H 1.08994 * 109.59058 * 188.90119 * 14 13 12 34 34 H 1.09006 * 109.58281 * 68.47196 * 14 13 12 35 35 H 1.09005 * 117.50635 * 144.81118 * 16 15 14 36 36 H 1.09007 * 117.50184 * 359.76866 * 16 15 14 37 37 H 1.09001 * 109.90747 * 299.41289 * 22 21 19 38 38 H 1.08998 * 109.90821 * 60.66361 * 22 21 19 39 39 H 1.07996 * 124.94433 * 180.14702 * 23 22 21 40 40 H 1.07993 * 124.94423 * 179.79537 * 24 23 22 41 41 H 1.09000 * 109.90504 * 299.33279 * 25 21 19 42 42 H 1.08994 * 109.90611 * 60.58655 * 25 21 19 43 43 H 1.08997 * 109.58789 * 64.35130 * 26 15 14 44 44 H 1.09000 * 109.58575 * 184.77761 * 26 15 14 45 45 H 1.08996 * 109.58249 * 242.87158 * 27 12 10 46 46 H 1.09003 * 109.58555 * 3.14244 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2301 -3.6447 0.0015 11 8 3.4225 -3.4232 0.0009 12 7 1.7807 -4.9154 0.0029 13 6 2.7274 -6.0380 0.0021 14 6 2.4389 -6.9274 -1.2133 15 6 0.9463 -7.2713 -1.2291 16 6 0.5011 -8.5327 -0.4895 17 6 0.5095 -8.5043 -2.0194 18 1 1.2848 -9.0758 -2.5296 19 6 -0.8226 -8.4447 -2.7216 20 8 -1.8205 -8.8506 -2.1645 21 7 -0.9041 -7.9458 -3.9709 22 6 0.1943 -7.4137 -4.7899 23 6 -0.4009 -6.9819 -6.1040 24 6 -1.6863 -7.2016 -6.1080 25 6 -2.1112 -7.8136 -4.7992 26 6 0.0018 -6.0655 -1.2107 27 6 0.3389 -5.1932 0.0041 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5575 -0.8881 30 1 0.6245 -2.5563 0.8920 31 1 2.6062 -6.6186 0.9166 32 1 3.7474 -5.6582 -0.0569 33 1 3.0244 -7.8439 -1.1427 34 1 2.7005 -6.3935 -2.1270 35 1 -0.4679 -8.5083 0.0093 36 1 1.2710 -9.1231 0.0073 37 1 0.6510 -6.5601 -4.2889 38 1 0.9403 -8.1900 -4.9598 39 1 0.1551 -6.5495 -6.9227 40 1 -2.3495 -6.9780 -6.9304 41 1 -2.5507 -8.7956 -4.9740 42 1 -2.8324 -7.1643 -4.3031 43 1 0.1320 -5.4854 -2.1243 44 1 -1.0297 -6.4104 -1.1382 45 1 0.0694 -5.7213 0.9187 46 1 -0.2140 -4.2555 -0.0527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:45 Heat of formation + Delta-G solvation = -16.543888 kcal Electronic energy + Delta-G solvation = -27201.410493 eV Core-core repulsion = 23478.347465 eV Total energy + Delta-G solvation = -3723.063028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.87248 -39.58137 -38.40062 -37.26569 -34.82560 -32.99938 -32.25994 -31.35060 -29.85933 -29.06077 -28.49876 -25.53028 -24.28658 -23.43492 -22.93783 -22.57184 -19.96027 -19.84752 -19.18291 -17.94298 -17.40823 -16.68566 -16.29442 -15.83524 -15.63602 -15.28730 -14.89640 -14.74177 -14.56593 -14.31388 -13.86520 -13.72166 -13.35419 -13.10488 -12.97849 -12.82897 -12.73609 -12.69657 -12.21268 -12.04433 -11.97403 -11.73533 -11.54716 -11.20270 -11.15022 -10.79664 -10.70699 -10.61232 -10.31940 -10.11861 -10.01664 -9.94608 -9.82585 -9.21721 -8.67143 -8.61765 -8.43159 -8.07887 -6.05502 -4.05026 1.74212 2.34603 2.58709 3.37202 3.39449 3.44247 3.48701 3.64039 3.72191 4.07914 4.27688 4.44798 4.47420 4.51282 4.63271 4.76092 4.85641 5.04212 5.17523 5.20435 5.25053 5.28477 5.32651 5.35217 5.39217 5.41723 5.51267 5.61615 5.68417 5.77826 5.80350 5.88040 5.90355 5.95818 5.98279 6.04612 6.13384 6.28682 6.34564 6.37081 7.03893 7.21659 7.23972 7.31650 7.94017 7.96128 7.98832 8.37591 9.05047 9.20451 9.59969 11.06783 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003419 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.590025 B = 8188.075827 C = 9230.426505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.007 3.993 10 C 0.517 3.483 11 O -0.546 6.546 12 N -0.627 5.627 13 C 0.114 3.886 14 C -0.095 4.095 15 C -0.090 4.090 16 C -0.136 4.136 17 C -0.184 4.184 18 H 0.126 0.874 19 C 0.573 3.427 20 O -0.536 6.536 21 N -0.617 5.617 22 C 0.123 3.877 23 C -0.167 4.167 24 C -0.168 4.168 25 C 0.127 3.873 26 C -0.101 4.101 27 C 0.116 3.884 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -19.430 -9.997 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.032 4.032 10 C 0.309 3.691 11 O -0.422 6.422 12 N -0.363 5.363 13 C -0.009 4.009 14 C -0.134 4.134 15 C -0.090 4.090 16 C -0.173 4.173 17 C -0.205 4.205 18 H 0.144 0.856 19 C 0.362 3.638 20 O -0.413 6.413 21 N -0.352 5.352 22 C 0.000 4.000 23 C -0.185 4.185 24 C -0.186 4.186 25 C 0.005 3.995 26 C -0.139 4.139 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.105 -19.427 -9.563 21.755 hybrid contribution 0.266 0.745 -0.330 0.857 sum -1.839 -18.682 -9.892 21.219 Atomic orbital electron populations 1.69951 1.06018 1.26997 1.51081 1.24995 0.94897 0.99422 0.95200 0.86497 0.79399 0.82338 0.78856 1.20153 1.21361 1.20119 1.21143 0.94209 0.89180 1.50212 0.90798 1.19239 0.94165 0.90557 0.99210 1.22051 0.90927 0.83221 0.72869 1.90516 1.18081 1.84095 1.49507 1.48305 1.06013 1.05944 1.76039 1.21353 0.95391 0.87708 0.96451 1.21583 0.91871 0.99888 1.00012 1.21580 0.96623 0.89141 1.01674 1.23109 1.03722 0.99468 0.90985 1.22280 0.96546 1.05825 0.95838 0.85617 1.19200 0.89900 0.76004 0.78655 1.90713 1.37935 1.47858 1.64761 1.48109 1.09988 1.62469 1.14633 1.20848 0.90291 0.99142 0.89680 1.23294 0.96502 1.00901 0.97816 1.23300 0.97161 1.00268 0.97837 1.20729 0.88642 1.00983 0.89148 1.21604 0.97596 0.94717 1.00023 1.21567 0.81771 1.00616 0.96760 0.92862 0.93566 0.93522 0.92269 0.89024 0.90873 0.90894 0.87582 0.87792 0.89735 0.90417 0.83527 0.83607 0.90520 0.90246 0.90880 0.90870 0.91886 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.74 8.92 -34.44 -0.31 -15.05 16 8 H 0.07 2.23 6.75 -52.48 -0.35 1.88 16 9 C 0.01 0.19 3.79 -29.03 -0.11 0.08 16 10 C 0.52 11.77 7.68 -10.98 -0.08 11.69 16 11 O -0.55 -14.10 14.84 5.56 0.08 -14.01 16 12 N -0.63 -10.90 2.92 -172.74 -0.50 -11.40 16 13 C 0.11 1.62 6.43 -3.67 -0.02 1.60 16 14 C -0.10 -1.05 5.83 -26.46 -0.15 -1.21 16 15 C -0.09 -0.98 1.94 -154.49 -0.30 -1.28 16 16 C -0.14 -1.38 9.45 -26.80 -0.25 -1.64 16 17 C -0.18 -1.89 5.21 -91.85 -0.48 -2.37 16 18 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 19 C 0.57 7.18 6.17 -10.98 -0.07 7.12 16 20 O -0.54 -8.55 16.95 5.56 0.09 -8.46 16 21 N -0.62 -6.63 3.37 -175.77 -0.59 -7.22 16 22 C 0.12 1.04 6.65 -4.99 -0.03 1.01 16 23 C -0.17 -1.20 10.87 -35.91 -0.39 -1.59 16 24 C -0.17 -1.22 10.87 -35.91 -0.39 -1.62 16 25 C 0.13 1.21 7.00 -4.98 -0.03 1.18 16 26 C -0.10 -1.31 5.23 -26.48 -0.14 -1.45 16 27 C 0.12 1.74 6.35 -3.70 -0.02 1.71 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 1.18 7.75 -51.93 -0.40 0.78 16 30 H 0.05 1.20 7.87 -51.93 -0.41 0.79 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.46 6.97 -51.93 -0.36 1.10 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.21 7.88 -51.93 -0.41 0.81 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.97 7.36 -51.93 -0.38 0.59 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 1.64 5.86 -51.93 -0.30 1.33 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -34.55 374.45 -9.70 -44.25 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.25 Total: 0.00 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.89 Total: -0.33 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.36 Total: -44.15 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.18 Total: -22.47 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.55 -9.70 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.706 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds