Wall clock time and date at job start Tue Mar 31 2020 12:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00514 * 2 1 4 4 H 1.48500 * 109.47151 * 240.00035 * 3 2 1 5 5 H 1.48506 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47609 * 119.99716 * 3 2 1 7 7 C 1.37875 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47302 * 179.97438 * 9 7 2 11 11 O 1.21278 * 120.00131 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.46845 * 120.38443 * 179.97438 * 12 10 9 14 14 C 1.53348 * 108.81473 * 236.93086 * 13 12 10 15 15 C 1.53179 * 108.76841 * 308.69211 * 14 13 12 16 16 C 1.52851 * 117.65402 * 269.96545 * 15 14 13 17 17 C 1.52822 * 117.71091 * 201.11644 * 15 14 13 18 18 H 1.09001 * 117.50154 * 0.09965 * 17 15 14 19 19 C 1.50706 * 117.49777 * 215.09360 * 17 15 14 20 20 O 1.21279 * 119.99954 * 267.25874 * 19 17 15 21 21 N 1.34774 * 119.99820 * 87.54329 * 19 17 15 22 22 C 1.46980 * 127.25438 * 359.67859 * 21 19 17 23 23 C 1.50591 * 107.13517 * 179.91523 * 22 21 19 24 24 C 1.30398 * 110.11904 * 0.36736 * 23 22 21 25 25 C 1.46990 * 127.24991 * 179.97438 * 21 19 17 26 26 C 1.53179 * 115.08156 * 55.43879 * 15 14 13 27 27 C 1.46837 * 120.38067 * 0.02760 * 12 10 9 28 28 H 0.97007 * 119.99509 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46844 * 60.00209 * 9 7 2 30 30 H 1.09004 * 109.46955 * 300.00126 * 9 7 2 31 31 H 1.09005 * 109.57719 * 117.13364 * 13 12 10 32 32 H 1.09000 * 109.69399 * 356.80218 * 13 12 10 33 33 H 1.08994 * 109.59058 * 188.90119 * 14 13 12 34 34 H 1.09006 * 109.58281 * 68.47196 * 14 13 12 35 35 H 1.09005 * 117.50635 * 144.81118 * 16 15 14 36 36 H 1.09007 * 117.50184 * 359.76866 * 16 15 14 37 37 H 1.09001 * 109.90747 * 299.41289 * 22 21 19 38 38 H 1.08998 * 109.90821 * 60.66361 * 22 21 19 39 39 H 1.07996 * 124.94433 * 180.14702 * 23 22 21 40 40 H 1.07993 * 124.94423 * 179.79537 * 24 23 22 41 41 H 1.09000 * 109.90504 * 299.33279 * 25 21 19 42 42 H 1.08994 * 109.90611 * 60.58655 * 25 21 19 43 43 H 1.08997 * 109.58789 * 64.35130 * 26 15 14 44 44 H 1.09000 * 109.58575 * 184.77761 * 26 15 14 45 45 H 1.08996 * 109.58249 * 242.87158 * 27 12 10 46 46 H 1.09003 * 109.58555 * 3.14244 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2301 -3.6447 0.0015 11 8 3.4225 -3.4232 0.0009 12 7 1.7807 -4.9154 0.0029 13 6 2.7274 -6.0380 0.0021 14 6 2.4389 -6.9274 -1.2133 15 6 0.9463 -7.2713 -1.2291 16 6 0.5011 -8.5327 -0.4895 17 6 0.5095 -8.5043 -2.0194 18 1 1.2848 -9.0758 -2.5296 19 6 -0.8226 -8.4447 -2.7216 20 8 -1.8205 -8.8506 -2.1645 21 7 -0.9041 -7.9458 -3.9709 22 6 0.1943 -7.4137 -4.7899 23 6 -0.4009 -6.9819 -6.1040 24 6 -1.6863 -7.2016 -6.1080 25 6 -2.1112 -7.8136 -4.7992 26 6 0.0018 -6.0655 -1.2107 27 6 0.3389 -5.1932 0.0041 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5575 -0.8881 30 1 0.6245 -2.5563 0.8920 31 1 2.6062 -6.6186 0.9166 32 1 3.7474 -5.6582 -0.0569 33 1 3.0244 -7.8439 -1.1427 34 1 2.7005 -6.3935 -2.1270 35 1 -0.4679 -8.5083 0.0093 36 1 1.2710 -9.1231 0.0073 37 1 0.6510 -6.5601 -4.2889 38 1 0.9403 -8.1900 -4.9598 39 1 0.1551 -6.5495 -6.9227 40 1 -2.3495 -6.9780 -6.9304 41 1 -2.5507 -8.7956 -4.9740 42 1 -2.8324 -7.1643 -4.3031 43 1 0.1320 -5.4854 -2.1243 44 1 -1.0297 -6.4104 -1.1382 45 1 0.0694 -5.7213 0.9187 46 1 -0.2140 -4.2555 -0.0527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:43 Heat of formation + Delta-G solvation = -37.580225 kcal Electronic energy + Delta-G solvation = -27202.322697 eV Core-core repulsion = 23478.347465 eV Total energy + Delta-G solvation = -3723.975232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81537 -40.85158 -39.51911 -38.40085 -36.19153 -35.14873 -33.05551 -32.58971 -31.28517 -30.27540 -29.72702 -26.41555 -26.00900 -24.66726 -24.05378 -23.68300 -21.11582 -20.62805 -20.09148 -19.12508 -18.64162 -18.33036 -17.60996 -17.16844 -16.87821 -16.57024 -16.30640 -16.18077 -15.66236 -15.39157 -14.97821 -14.84263 -14.51061 -14.32735 -14.22613 -14.11024 -13.82507 -13.74052 -13.35490 -13.27930 -13.18019 -12.95285 -12.77858 -12.63600 -12.56773 -12.32978 -12.22983 -11.99339 -11.82859 -11.42194 -11.24046 -11.04097 -10.81156 -10.70890 -10.62846 -10.45093 -9.51872 -9.42628 -8.25199 -6.33041 1.17833 1.39869 1.40128 1.42878 1.51512 1.79262 1.85327 2.17597 2.44248 2.67805 3.09997 3.31093 3.56697 3.65619 3.66492 3.75943 3.81064 3.98218 4.09404 4.18863 4.27501 4.39575 4.43036 4.47010 4.52849 4.57949 4.62626 4.63889 4.75398 4.81059 4.86781 4.90432 4.93952 4.97296 5.01236 5.05600 5.13465 5.19600 5.22940 5.28865 5.39189 5.65654 5.76982 5.79611 6.05991 6.39902 6.52859 6.80249 7.01539 7.33348 7.46759 8.86673 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003419 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.590025 B = 8188.075827 C = 9230.426505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.518 3.482 11 O -0.583 6.583 12 N -0.614 5.614 13 C 0.108 3.892 14 C -0.082 4.082 15 C -0.094 4.094 16 C -0.128 4.128 17 C -0.172 4.172 18 H 0.156 0.844 19 C 0.564 3.436 20 O -0.580 6.580 21 N -0.620 5.620 22 C 0.116 3.884 23 C -0.165 4.165 24 C -0.170 4.170 25 C 0.118 3.882 26 C -0.091 4.091 27 C 0.114 3.886 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 -20.763 -10.942 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.026 4.026 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.348 5.348 13 C -0.014 4.014 14 C -0.120 4.120 15 C -0.095 4.095 16 C -0.165 4.165 17 C -0.193 4.193 18 H 0.173 0.827 19 C 0.354 3.646 20 O -0.460 6.460 21 N -0.353 5.353 22 C -0.006 4.006 23 C -0.183 4.183 24 C -0.188 4.188 25 C -0.004 4.004 26 C -0.129 4.129 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.026 -20.798 -10.537 23.338 hybrid contribution -0.167 1.109 -0.040 1.122 sum -1.194 -19.689 -10.577 22.382 Atomic orbital electron populations 1.70036 1.07186 1.28131 1.51064 1.25791 0.95823 1.02734 0.94394 0.85517 0.78378 0.78274 0.78979 1.19607 1.19906 1.19736 1.21366 0.93687 0.91275 1.51329 0.92631 1.19025 0.94246 0.91143 0.98152 1.21457 0.89686 0.84579 0.73387 1.90488 1.19010 1.85038 1.51794 1.48185 1.07656 1.05164 1.73809 1.21655 0.93513 0.86858 0.99373 1.21508 0.92088 1.00588 0.97821 1.21395 0.96038 0.88594 1.03433 1.23209 1.03772 0.98515 0.91039 1.22344 0.95843 1.04956 0.96110 0.82654 1.19669 0.90303 0.75573 0.79032 1.90689 1.39451 1.49980 1.65902 1.48258 1.11168 1.61383 1.14510 1.21047 0.90080 0.99517 0.89906 1.23535 0.96533 1.00515 0.97734 1.23424 0.97717 1.00386 0.97253 1.20854 0.88380 1.00979 0.90230 1.21425 0.98041 0.95250 0.98198 1.21679 0.80027 1.00296 0.98853 0.92412 0.94553 0.94584 0.89813 0.90759 0.86984 0.91685 0.89123 0.84887 0.90446 0.88335 0.81138 0.81335 0.90608 0.91731 0.92194 0.91350 0.89782 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.57 13.29 21.45 0.28 -54.29 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.54 -32.14 8.92 25.60 0.23 -31.91 16 8 H 0.06 3.47 6.75 -2.91 -0.02 3.45 16 9 C 0.01 0.72 3.79 29.10 0.11 0.83 16 10 C 0.52 24.23 7.68 87.66 0.67 24.91 16 11 O -0.58 -30.97 14.84 -3.02 -0.04 -31.01 16 12 N -0.61 -21.29 2.92 -818.80 -2.39 -23.69 16 13 C 0.11 2.86 6.43 86.43 0.56 3.42 16 14 C -0.08 -1.56 5.83 30.77 0.18 -1.38 16 15 C -0.09 -1.85 1.94 -52.17 -0.10 -1.95 16 16 C -0.13 -2.23 9.45 30.55 0.29 -1.94 16 17 C -0.17 -3.06 5.21 -11.59 -0.06 -3.12 16 18 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 19 C 0.56 13.64 6.17 87.66 0.54 14.18 16 20 O -0.58 -18.61 16.95 -3.03 -0.05 -18.67 16 21 N -0.62 -12.81 3.37 -828.40 -2.79 -15.61 16 22 C 0.12 1.75 6.65 85.51 0.57 2.32 16 23 C -0.17 -2.03 10.87 26.23 0.29 -1.74 16 24 C -0.17 -2.23 10.87 26.24 0.29 -1.94 16 25 C 0.12 2.23 7.00 85.51 0.60 2.83 16 26 C -0.09 -2.33 5.23 30.76 0.16 -2.17 16 27 C 0.11 3.42 6.35 86.42 0.55 3.97 16 28 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 29 H 0.04 1.96 7.75 -2.38 -0.02 1.94 16 30 H 0.04 1.95 7.87 -2.38 -0.02 1.93 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 2.29 6.97 -2.39 -0.02 2.27 16 33 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.09 1.92 7.88 -2.38 -0.02 1.90 16 36 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.84 7.36 -2.39 -0.02 1.82 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 46 H 0.08 2.65 5.86 -2.39 -0.01 2.63 16 Total: -1.00 -77.42 374.45 3.32 -74.10 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.97 Total: 14.24 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.32 Total: 7.42 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.90 Total: -93.58 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.10 Total: -49.68 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -77.42 3.32 -74.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.517 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds