Wall clock time and date at job start Tue Mar 31 2020 12:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46648 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47110 * 299.99637 * 3 2 1 6 6 H 1.48499 * 109.47277 * 60.00327 * 3 2 1 7 7 C 1.37875 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.46876 * 124.36890 * 269.98241 * 11 10 9 13 13 C 1.54710 * 105.51730 * 196.85735 * 12 11 10 14 14 C 1.53627 * 101.50714 * 335.46097 * 13 12 11 15 15 C 1.53610 * 110.83176 * 263.11497 * 14 13 12 16 16 C 1.55159 * 102.65938 * 260.52927 * 15 14 13 17 17 N 1.48696 * 103.38522 * 323.43354 * 16 15 14 18 18 C 1.46901 * 111.04054 * 159.10690 * 17 16 15 19 19 C 1.50700 * 109.47167 * 52.57416 * 18 17 16 20 20 C 1.41382 * 126.58394 * 90.00225 * 19 18 17 21 21 C 1.34509 * 106.84216 * 179.97438 * 20 19 18 22 22 O 1.34306 * 108.42200 * 359.97438 * 21 20 19 23 23 C 1.34308 * 109.47556 * 359.76952 * 22 21 20 24 24 C 1.48185 * 105.82606 * 38.56649 * 17 16 15 25 25 C 1.34754 * 124.37367 * 90.01761 * 11 10 9 26 26 O 1.21279 * 125.13145 * 358.97969 * 25 11 10 27 27 H 0.97001 * 119.99475 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47436 * 59.99506 * 9 7 2 29 29 H 1.09006 * 109.47053 * 299.99211 * 9 7 2 30 30 H 1.08996 * 109.47524 * 59.99433 * 10 9 7 31 31 H 1.08997 * 109.47036 * 299.99437 * 10 9 7 32 32 H 1.08997 * 110.24003 * 315.86519 * 12 11 10 33 33 H 1.08996 * 110.24235 * 77.75646 * 12 11 10 34 34 H 1.09001 * 111.01482 * 217.40536 * 13 12 11 35 35 H 1.08993 * 111.02080 * 93.51904 * 13 12 11 36 36 H 1.09006 * 110.77350 * 18.82174 * 15 14 13 37 37 H 1.08995 * 110.77201 * 142.23319 * 15 14 13 38 38 H 1.09002 * 110.64792 * 81.87935 * 16 15 14 39 39 H 1.09006 * 110.63922 * 204.94425 * 16 15 14 40 40 H 1.09004 * 109.46576 * 172.56883 * 18 17 16 41 41 H 1.08997 * 109.47556 * 292.56455 * 18 17 16 42 42 H 1.07995 * 126.57667 * 359.97438 * 20 19 18 43 43 H 1.08000 * 125.79363 * 179.97438 * 21 20 19 44 44 H 1.08000 * 125.79201 * 180.23872 * 23 22 21 45 45 H 1.09002 * 110.02047 * 215.61154 * 24 17 16 46 46 H 1.08997 * 110.01692 * 94.26201 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 1.0980 -5.6481 1.2151 13 6 0.7668 -7.0867 0.7522 14 6 0.4282 -6.8616 -0.7293 15 6 -1.0902 -6.7457 -0.9311 16 6 -1.4769 -8.1647 -1.4252 17 7 -0.3233 -8.5590 -2.2766 18 6 -0.2580 -10.0182 -2.4335 19 6 -1.5920 -10.5324 -2.9102 20 6 -2.0033 -10.6891 -4.2537 21 6 -3.2576 -11.1740 -4.2232 22 8 -3.6255 -11.3189 -2.9397 23 6 -2.6174 -10.9364 -2.1390 24 6 0.8828 -8.0446 -1.5864 25 6 1.1331 -5.5907 -1.1095 26 8 1.3309 -5.2152 -2.2456 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 1.9111 -5.6635 1.9409 33 1 0.2155 -5.1775 1.6484 34 1 -0.0920 -7.4836 1.2936 35 1 1.6316 -7.7411 0.8605 36 1 -1.5888 -6.5149 0.0104 37 1 -1.3235 -5.9961 -1.6872 38 1 -1.5840 -8.8489 -0.5834 39 1 -2.3943 -8.1302 -2.0128 40 1 0.5108 -10.2709 -3.1637 41 1 -0.0134 -10.4761 -1.4751 42 1 -1.4220 -10.4630 -5.1353 43 1 -3.8658 -11.4072 -5.0847 44 1 -2.6290 -10.9484 -1.0591 45 1 1.6192 -7.7136 -2.3187 46 1 1.3102 -8.8219 -0.9529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272983286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:43 Heat of formation + Delta-G solvation = -8.971715 kcal Electronic energy + Delta-G solvation = -26708.227011 eV Core-core repulsion = 22985.492337 eV Total energy + Delta-G solvation = -3722.734674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.79303 -40.90384 -38.12881 -35.97598 -34.64780 -33.40561 -32.18764 -30.66280 -29.75631 -29.03112 -28.00648 -26.04458 -24.92057 -23.32378 -22.10206 -21.84083 -21.34928 -20.48588 -20.08268 -18.60072 -17.58351 -16.63965 -16.44565 -16.15350 -15.85188 -15.35308 -15.11792 -14.90442 -14.59126 -14.49232 -14.33592 -13.64775 -13.53576 -13.04783 -12.98687 -12.69578 -12.66855 -12.51655 -12.37777 -12.03873 -11.84425 -11.71073 -11.65578 -11.37264 -11.27961 -10.99199 -10.95235 -10.67643 -10.62500 -9.98801 -9.95420 -9.84868 -9.31238 -9.05752 -8.83561 -8.46588 -8.36984 -7.99443 -6.01812 -4.05196 1.51629 2.33722 2.90214 3.02571 3.31032 3.38115 3.41896 3.55362 3.93987 4.32582 4.37804 4.45982 4.46486 4.55627 4.64376 4.76580 4.86897 5.06750 5.12042 5.17454 5.26500 5.34219 5.34459 5.44894 5.45713 5.50885 5.65492 5.71533 5.78272 5.79508 5.84239 5.90905 5.93227 6.02042 6.11873 6.16499 6.24509 6.46974 6.71057 6.82068 6.86024 6.89282 7.03660 7.52369 7.68078 7.86483 7.98382 8.34556 8.71674 9.01862 9.58886 11.09662 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.002465 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.753872 B =11358.035246 C =11697.389469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.011 3.989 10 C 0.128 3.872 11 N -0.613 5.613 12 C 0.103 3.897 13 C -0.123 4.123 14 C -0.106 4.106 15 C -0.101 4.101 16 C 0.043 3.957 17 N -0.506 5.506 18 C 0.115 3.885 19 C -0.172 4.172 20 C -0.193 4.193 21 C -0.047 4.047 22 O -0.178 6.178 23 C -0.039 4.039 24 C 0.061 3.939 25 C 0.527 3.473 26 O -0.522 6.522 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.149 0.851 43 H 0.201 0.799 44 H 0.198 0.802 45 H 0.090 0.910 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -25.716 -0.057 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.027 4.027 10 C 0.008 3.992 11 N -0.346 5.346 12 C -0.021 4.021 13 C -0.161 4.161 14 C -0.110 4.110 15 C -0.140 4.140 16 C -0.085 4.085 17 N -0.231 5.231 18 C -0.013 4.013 19 C -0.173 4.173 20 C -0.213 4.213 21 C -0.115 4.115 22 O -0.074 6.074 23 C -0.107 4.107 24 C -0.067 4.067 25 C 0.313 3.687 26 O -0.397 6.397 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.166 0.834 43 H 0.218 0.782 44 H 0.214 0.786 45 H 0.108 0.892 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.525 -25.206 -1.087 25.632 hybrid contribution 0.619 0.784 0.806 1.284 sum -3.905 -24.422 -0.282 24.734 Atomic orbital electron populations 1.69989 1.06103 1.26569 1.50482 1.25009 0.94859 0.99330 0.95133 0.86497 0.80086 0.83597 0.77588 1.19664 1.20935 1.21004 1.21127 0.93068 0.90694 1.51127 0.92435 1.19411 0.94448 0.91082 0.97709 1.21800 0.95000 0.81033 1.01323 1.48631 1.56312 1.23555 1.06095 1.22046 1.00709 0.91005 0.88313 1.22726 1.02461 0.96960 0.93915 1.21521 0.97728 0.95566 0.96186 1.22357 0.91581 0.97678 1.02349 1.23272 0.95154 0.95122 0.94926 1.64993 1.02425 1.10274 1.45370 1.20606 0.93221 0.87621 0.99819 1.20311 0.97650 1.05803 0.93568 1.21740 0.96529 1.05238 0.97745 1.24018 0.97131 1.05585 0.84740 1.84067 1.39657 1.66840 1.16802 1.23858 0.86511 1.03956 0.96409 1.22709 0.93528 0.94281 0.96162 1.20086 0.78649 0.85127 0.84867 1.90711 1.56621 1.71601 1.20783 0.92995 0.96069 0.96515 0.91681 0.91162 0.90611 0.91082 0.89452 0.90142 0.90057 0.89749 0.93847 0.89867 0.89618 0.93889 0.83367 0.78230 0.78576 0.89220 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 10 C 0.13 2.75 5.88 -4.04 -0.02 2.72 16 11 N -0.61 -11.17 2.94 -172.53 -0.51 -11.68 16 12 C 0.10 1.36 7.37 -2.94 -0.02 1.34 16 13 C -0.12 -1.25 6.07 -25.51 -0.15 -1.41 16 14 C -0.11 -1.42 0.77 -155.25 -0.12 -1.54 16 15 C -0.10 -1.30 6.11 -25.27 -0.15 -1.46 16 16 C 0.04 0.46 5.09 -1.69 -0.01 0.45 16 17 N -0.51 -6.01 5.40 -231.99 -1.25 -7.26 16 18 C 0.11 1.09 5.55 -4.98 -0.03 1.06 16 19 C -0.17 -1.63 4.76 -104.74 -0.50 -2.13 16 20 C -0.19 -1.80 10.87 -39.70 -0.43 -2.23 16 21 C -0.05 -0.39 12.09 29.41 0.36 -0.03 16 22 O -0.18 -1.67 10.65 5.69 0.06 -1.61 16 23 C -0.04 -0.33 10.95 29.42 0.32 -0.01 16 24 C 0.06 0.75 6.01 -3.12 -0.02 0.73 16 25 C 0.53 9.92 6.63 -11.22 -0.07 9.85 16 26 O -0.52 -12.17 17.18 5.56 0.10 -12.07 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.59 7.95 -51.93 -0.41 1.17 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.69 7.67 -51.93 -0.40 0.30 16 35 H 0.08 0.70 7.62 -51.93 -0.40 0.31 16 36 H 0.08 0.90 7.64 -51.93 -0.40 0.51 16 37 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 38 H 0.04 0.37 7.79 -51.93 -0.40 -0.03 16 39 H 0.08 0.95 7.81 -51.93 -0.41 0.54 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.34 7.82 -51.93 -0.41 -0.06 16 42 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.20 1.11 8.03 -52.49 -0.42 0.69 16 45 H 0.09 1.30 7.46 -51.93 -0.39 0.91 16 46 H 0.05 0.50 6.86 -51.93 -0.36 0.15 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -35.30 373.92 -8.99 -44.29 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.32 Total: -1.53 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.41 Total: -6.13 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.03 Total: -45.43 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.16 Total: -13.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.30 -8.99 -44.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272983286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.319 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds