Wall clock time and date at job start Tue Mar 31 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46648 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47110 * 299.99637 * 3 2 1 6 6 H 1.48499 * 109.47277 * 60.00327 * 3 2 1 7 7 C 1.37875 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.46876 * 124.36890 * 269.98241 * 11 10 9 13 13 C 1.54710 * 105.51730 * 196.85735 * 12 11 10 14 14 C 1.53627 * 101.50714 * 335.46097 * 13 12 11 15 15 C 1.53610 * 110.83176 * 263.11497 * 14 13 12 16 16 C 1.55159 * 102.65938 * 260.52927 * 15 14 13 17 17 N 1.48696 * 103.38522 * 323.43354 * 16 15 14 18 18 C 1.46901 * 111.04054 * 159.10690 * 17 16 15 19 19 C 1.50700 * 109.47167 * 52.57416 * 18 17 16 20 20 C 1.41382 * 126.58394 * 90.00225 * 19 18 17 21 21 C 1.34509 * 106.84216 * 179.97438 * 20 19 18 22 22 O 1.34306 * 108.42200 * 359.97438 * 21 20 19 23 23 C 1.34308 * 109.47556 * 359.76952 * 22 21 20 24 24 C 1.48185 * 105.82606 * 38.56649 * 17 16 15 25 25 C 1.34754 * 124.37367 * 90.01761 * 11 10 9 26 26 O 1.21279 * 125.13145 * 358.97969 * 25 11 10 27 27 H 0.97001 * 119.99475 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47436 * 59.99506 * 9 7 2 29 29 H 1.09006 * 109.47053 * 299.99211 * 9 7 2 30 30 H 1.08996 * 109.47524 * 59.99433 * 10 9 7 31 31 H 1.08997 * 109.47036 * 299.99437 * 10 9 7 32 32 H 1.08997 * 110.24003 * 315.86519 * 12 11 10 33 33 H 1.08996 * 110.24235 * 77.75646 * 12 11 10 34 34 H 1.09001 * 111.01482 * 217.40536 * 13 12 11 35 35 H 1.08993 * 111.02080 * 93.51904 * 13 12 11 36 36 H 1.09006 * 110.77350 * 18.82174 * 15 14 13 37 37 H 1.08995 * 110.77201 * 142.23319 * 15 14 13 38 38 H 1.09002 * 110.64792 * 81.87935 * 16 15 14 39 39 H 1.09006 * 110.63922 * 204.94425 * 16 15 14 40 40 H 1.09004 * 109.46576 * 172.56883 * 18 17 16 41 41 H 1.08997 * 109.47556 * 292.56455 * 18 17 16 42 42 H 1.07995 * 126.57667 * 359.97438 * 20 19 18 43 43 H 1.08000 * 125.79363 * 179.97438 * 21 20 19 44 44 H 1.08000 * 125.79201 * 180.23872 * 23 22 21 45 45 H 1.09002 * 110.02047 * 215.61154 * 24 17 16 46 46 H 1.08997 * 110.01692 * 94.26201 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 1.0980 -5.6481 1.2151 13 6 0.7668 -7.0867 0.7522 14 6 0.4282 -6.8616 -0.7293 15 6 -1.0902 -6.7457 -0.9311 16 6 -1.4769 -8.1647 -1.4252 17 7 -0.3233 -8.5590 -2.2766 18 6 -0.2580 -10.0182 -2.4335 19 6 -1.5920 -10.5324 -2.9102 20 6 -2.0033 -10.6891 -4.2537 21 6 -3.2576 -11.1740 -4.2232 22 8 -3.6255 -11.3189 -2.9397 23 6 -2.6174 -10.9364 -2.1390 24 6 0.8828 -8.0446 -1.5864 25 6 1.1331 -5.5907 -1.1095 26 8 1.3309 -5.2152 -2.2456 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 1.9111 -5.6635 1.9409 33 1 0.2155 -5.1775 1.6484 34 1 -0.0920 -7.4836 1.2936 35 1 1.6316 -7.7411 0.8605 36 1 -1.5888 -6.5149 0.0104 37 1 -1.3235 -5.9961 -1.6872 38 1 -1.5840 -8.8489 -0.5834 39 1 -2.3943 -8.1302 -2.0128 40 1 0.5108 -10.2709 -3.1637 41 1 -0.0134 -10.4761 -1.4751 42 1 -1.4220 -10.4630 -5.1353 43 1 -3.8658 -11.4072 -5.0847 44 1 -2.6290 -10.9484 -1.0591 45 1 1.6192 -7.7136 -2.3187 46 1 1.3102 -8.8219 -0.9529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272983286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:42 Heat of formation + Delta-G solvation = -33.683901 kcal Electronic energy + Delta-G solvation = -26709.298611 eV Core-core repulsion = 22985.492337 eV Total energy + Delta-G solvation = -3723.806275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.42734 -42.10455 -39.24267 -37.47515 -35.99873 -34.94927 -33.52306 -31.88017 -30.52699 -30.41233 -29.09910 -27.18697 -26.54580 -24.38914 -23.66803 -22.73136 -22.14878 -21.64378 -20.99119 -19.94386 -18.69834 -18.24679 -17.51459 -17.22671 -16.93884 -16.66257 -16.45406 -16.07185 -15.81724 -15.49313 -15.42082 -14.87300 -14.68435 -14.46452 -14.37597 -13.90757 -13.69149 -13.62663 -13.54042 -13.24871 -13.10103 -12.92086 -12.82828 -12.62602 -12.56147 -12.46392 -12.19989 -12.03821 -11.96868 -11.83169 -11.55128 -11.40288 -10.68335 -10.63683 -10.58362 -9.57092 -9.48588 -9.22197 -8.25779 -6.38838 0.90560 1.37239 1.39252 1.52140 1.57215 1.67242 2.13674 2.34952 2.40148 3.07684 3.10173 3.21412 3.45202 3.55766 3.90456 3.94051 3.97473 4.08922 4.14544 4.24748 4.30347 4.37600 4.43258 4.50653 4.60531 4.63334 4.71059 4.73675 4.80771 4.83887 4.84958 4.86923 4.95852 5.00640 5.09272 5.16865 5.20202 5.32278 5.34647 5.44276 5.58820 5.60173 5.80553 5.89447 6.10189 6.13658 6.24616 6.30206 6.76911 7.23242 7.31322 8.86724 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.002465 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.753872 B =11358.035246 C =11697.389469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.620 5.620 12 C 0.092 3.908 13 C -0.102 4.102 14 C -0.099 4.099 15 C -0.104 4.104 16 C 0.056 3.944 17 N -0.534 5.534 18 C 0.119 3.881 19 C -0.192 4.192 20 C -0.221 4.221 21 C -0.046 4.046 22 O -0.190 6.190 23 C -0.034 4.034 24 C 0.068 3.932 25 C 0.509 3.491 26 O -0.584 6.584 27 H 0.264 0.736 28 H -0.031 1.031 29 H 0.001 0.999 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.146 0.854 43 H 0.229 0.771 44 H 0.227 0.773 45 H 0.055 0.945 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -27.755 2.511 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.014 4.014 10 C 0.020 3.980 11 N -0.352 5.352 12 C -0.030 4.030 13 C -0.140 4.140 14 C -0.103 4.103 15 C -0.143 4.143 16 C -0.071 4.071 17 N -0.259 5.259 18 C -0.008 4.008 19 C -0.193 4.193 20 C -0.240 4.240 21 C -0.113 4.113 22 O -0.085 6.085 23 C -0.103 4.103 24 C -0.060 4.060 25 C 0.298 3.702 26 O -0.465 6.465 27 H 0.073 0.927 28 H -0.013 1.013 29 H 0.020 0.980 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.245 0.755 44 H 0.244 0.756 45 H 0.074 0.926 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.169 -27.284 1.523 27.643 hybrid contribution 0.455 1.436 -0.058 1.508 sum -3.714 -25.848 1.464 26.155 Atomic orbital electron populations 1.70131 1.08023 1.27875 1.51279 1.26052 0.95813 1.03695 0.94377 0.85301 0.79137 0.78188 0.77827 1.18186 1.20816 1.19714 1.21581 0.93769 0.91778 1.51130 0.91476 1.19212 0.94577 0.93291 0.94328 1.21363 0.93839 0.81164 1.01637 1.48767 1.55628 1.22521 1.08252 1.22443 1.01551 0.92329 0.86680 1.22816 1.05163 0.95255 0.90742 1.21528 0.97032 0.92792 0.98925 1.22380 0.91636 0.98158 1.02080 1.23184 0.94207 0.94008 0.95712 1.64880 1.02527 1.12205 1.46335 1.20589 0.93156 0.86085 1.00923 1.20449 0.98223 1.06845 0.93826 1.21961 0.97471 1.06471 0.98140 1.24558 0.97036 1.04511 0.85178 1.84080 1.40153 1.66969 1.17310 1.24390 0.85671 1.02650 0.97541 1.22606 0.93194 0.94577 0.95664 1.21207 0.78010 0.86940 0.84054 1.90655 1.58930 1.73535 1.23351 0.92681 1.01267 0.98040 0.88816 0.93206 0.87977 0.91358 0.85622 0.87333 0.87891 0.94452 0.90054 0.90893 0.90277 0.91310 0.83614 0.75482 0.75649 0.92646 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.02 1.34 5.30 29.85 0.16 1.49 16 10 C 0.14 6.24 5.88 86.38 0.51 6.75 16 11 N -0.62 -22.88 2.94 -818.18 -2.41 -25.29 16 12 C 0.09 2.19 7.37 86.89 0.64 2.83 16 13 C -0.10 -1.65 6.07 31.39 0.19 -1.46 16 14 C -0.10 -2.54 0.77 -52.66 -0.04 -2.58 16 15 C -0.10 -2.62 6.11 31.54 0.19 -2.43 16 16 C 0.06 1.09 5.09 86.70 0.44 1.53 16 17 N -0.53 -12.08 5.40 -887.89 -4.80 -16.88 16 18 C 0.12 2.01 5.55 85.56 0.47 2.49 16 19 C -0.19 -3.33 4.76 -19.94 -0.09 -3.43 16 20 C -0.22 -4.02 10.87 22.19 0.24 -3.78 16 21 C -0.05 -0.69 12.09 66.97 0.81 0.12 16 22 O -0.19 -3.18 10.65 -2.56 -0.03 -3.20 16 23 C -0.03 -0.49 10.95 66.97 0.73 0.25 16 24 C 0.07 1.56 6.01 86.05 0.52 2.07 16 25 C 0.51 20.00 6.63 87.51 0.58 20.58 16 26 O -0.58 -29.60 17.18 -3.03 -0.05 -29.65 16 27 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 28 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 29 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.05 2.37 7.95 -2.39 -0.02 2.35 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.13 1.19 7.67 -2.39 -0.02 1.17 16 35 H 0.11 1.24 7.62 -2.39 -0.02 1.22 16 36 H 0.10 2.08 7.64 -2.38 -0.02 2.06 16 37 H 0.04 1.27 7.92 -2.39 -0.02 1.26 16 38 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 39 H 0.07 1.58 7.81 -2.38 -0.02 1.56 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.07 0.80 7.82 -2.39 -0.02 0.78 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 43 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.23 1.56 8.03 -2.91 -0.02 1.53 16 45 H 0.06 1.66 7.46 -2.39 -0.02 1.64 16 46 H 0.09 1.37 6.86 -2.39 -0.02 1.35 16 Total: -1.00 -84.21 373.92 2.03 -82.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.96 Total: 10.79 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 6.05 Total: -6.86 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -6.92 Total: -100.51 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.08 Total: -32.86 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -84.21 2.03 -82.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272983286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.500 kcal (2) G-P(sol) polarization free energy of solvation -84.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds