Wall clock time and date at job start Tue Mar 31 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48504 * 109.46859 * 269.99632 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.98988 * 3 2 1 6 6 H 1.48494 * 109.47382 * 149.99294 * 3 2 1 7 7 C 1.37878 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00604 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47151 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47122 * 180.02562 * 10 9 7 12 12 C 1.46846 * 124.36829 * 89.99709 * 11 10 9 13 13 C 1.54642 * 105.50275 * 163.12527 * 12 11 10 14 14 C 1.53886 * 101.58940 * 24.77926 * 13 12 11 15 15 C 1.53599 * 110.35457 * 95.51617 * 14 13 12 16 16 C 1.55309 * 102.79639 * 143.25810 * 15 14 13 17 17 C 1.54980 * 101.73775 * 324.96017 * 16 15 14 18 18 N 1.46647 * 110.91394 * 215.24071 * 14 13 12 19 19 C 1.46906 * 110.99838 * 2.14294 * 18 14 13 20 20 C 1.50700 * 109.47014 * 176.98361 * 19 18 14 21 21 C 1.41377 * 126.57904 * 90.00145 * 20 19 18 22 22 C 1.34516 * 106.84427 * 179.97438 * 21 20 19 23 23 O 1.34301 * 108.41871 * 0.02562 * 22 21 20 24 24 C 1.34309 * 109.47470 * 359.77032 * 23 22 21 25 25 C 1.34657 * 124.36311 * 269.99648 * 11 10 9 26 26 O 1.21281 * 125.07630 * 0.83681 * 25 11 10 27 27 H 0.97000 * 120.00410 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47121 * 59.99883 * 9 7 2 29 29 H 1.09000 * 109.47062 * 299.99286 * 9 7 2 30 30 H 1.08996 * 109.47253 * 59.99904 * 10 9 7 31 31 H 1.09003 * 109.46655 * 300.00085 * 10 9 7 32 32 H 1.09000 * 110.24242 * 44.11643 * 12 11 10 33 33 H 1.08998 * 110.24065 * 282.13592 * 12 11 10 34 34 H 1.08997 * 111.00336 * 266.70510 * 13 12 11 35 35 H 1.08996 * 111.03828 * 142.87017 * 13 12 11 36 36 H 1.09003 * 110.75038 * 261.58924 * 15 14 13 37 37 H 1.09004 * 110.74609 * 24.92991 * 15 14 13 38 38 H 1.09005 * 110.97093 * 83.07274 * 16 15 14 39 39 H 1.08998 * 110.97476 * 206.81019 * 16 15 14 40 40 H 1.08999 * 110.37043 * 277.82531 * 17 16 15 41 41 H 1.09001 * 110.36868 * 155.49783 * 17 16 15 42 42 H 1.08994 * 109.47174 * 296.98593 * 19 18 14 43 43 H 1.08999 * 109.46807 * 56.98796 * 19 18 14 44 44 H 1.08001 * 126.58009 * 0.02562 * 21 20 19 45 45 H 1.08000 * 125.79216 * 180.02562 * 22 21 20 46 46 H 1.07999 * 125.78880 * 180.24323 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9309 0.0012 12 6 1.0995 -5.6489 -1.2112 13 6 0.7684 -7.0866 -0.7476 14 6 0.4212 -6.8612 0.7345 15 6 -1.0976 -6.7157 0.9113 16 6 -1.3565 -7.4314 2.2651 17 6 -0.3174 -8.5803 2.2181 18 7 0.8682 -7.9917 1.5547 19 6 1.5647 -8.9931 0.7360 20 6 2.0728 -10.1010 1.6222 21 6 1.3809 -11.2824 1.9748 22 6 2.1986 -11.9887 2.7760 23 8 3.3424 -11.3012 2.9271 24 6 3.2736 -10.1578 2.2258 25 6 1.1315 -5.5890 1.1124 26 8 1.3307 -5.2128 2.2481 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8904 30 1 2.8712 -3.6040 0.8922 31 1 2.8726 -3.6047 -0.8877 32 1 1.9134 -5.6645 -1.9361 33 1 0.2164 -5.1797 -1.6449 34 1 1.6349 -7.7397 -0.8508 35 1 -0.0866 -7.4864 -1.2927 36 1 -1.3807 -5.6647 0.9697 37 1 -1.6302 -7.2156 0.1022 38 1 -1.1612 -6.7627 3.1035 39 1 -2.3721 -7.8246 2.3107 40 1 -0.7026 -9.4166 1.6347 41 1 -0.0651 -8.9052 3.2276 42 1 0.8742 -9.4044 -0.0002 43 1 2.4044 -8.5233 0.2239 44 1 0.3869 -11.5642 1.6603 45 1 1.9735 -12.9461 3.2222 46 1 4.0499 -9.4100 2.1594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272983853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:48 Heat of formation + Delta-G solvation = -19.905571 kcal Electronic energy + Delta-G solvation = -27326.013425 eV Core-core repulsion = 23602.804624 eV Total energy + Delta-G solvation = -3723.208801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.41628 -42.19207 -39.16376 -37.35596 -35.62871 -35.04108 -33.54353 -32.45416 -30.74046 -30.27347 -28.81078 -27.17892 -26.44740 -24.64811 -23.59761 -22.79117 -22.19081 -21.80829 -20.58710 -19.90400 -18.68831 -18.19892 -17.66807 -17.04284 -16.86425 -16.77067 -16.52780 -16.36778 -15.77012 -15.54002 -15.00814 -14.90499 -14.55447 -14.49451 -14.32030 -14.26387 -13.71263 -13.55546 -13.42843 -13.25554 -13.08938 -12.90781 -12.85689 -12.60384 -12.50452 -12.23394 -12.10505 -11.97940 -11.89254 -11.85407 -11.46187 -11.42688 -10.75980 -10.60912 -10.59233 -9.54115 -9.41860 -9.17786 -8.24973 -6.37966 0.92590 1.37655 1.40572 1.51520 1.57775 1.74851 2.12535 2.36764 2.40582 3.03378 3.08384 3.33217 3.42805 3.73304 3.74681 3.97889 4.01959 4.03999 4.15506 4.22216 4.29265 4.33305 4.46950 4.55705 4.60752 4.63450 4.68496 4.72658 4.80467 4.83112 4.86485 4.90723 4.95550 5.05110 5.08032 5.18213 5.25445 5.32548 5.34124 5.44895 5.59970 5.65067 5.80836 5.94219 6.08059 6.16082 6.28458 6.36146 6.77513 7.30840 7.33751 8.87311 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.002869 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.488789 B = 9758.677313 C =10148.200430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.025 3.975 10 C 0.144 3.856 11 N -0.622 5.622 12 C 0.097 3.903 13 C -0.143 4.143 14 C 0.078 3.922 15 C -0.119 4.119 16 C -0.130 4.130 17 C 0.061 3.939 18 N -0.526 5.526 19 C 0.120 3.880 20 C -0.186 4.186 21 C -0.213 4.213 22 C -0.047 4.047 23 O -0.195 6.195 24 C -0.040 4.040 25 C 0.515 3.485 26 O -0.578 6.578 27 H 0.265 0.735 28 H 0.001 0.999 29 H -0.030 1.030 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.046 0.954 37 H 0.119 0.881 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.164 0.836 45 H 0.232 0.768 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -27.611 -3.158 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.013 4.013 10 C 0.022 3.978 11 N -0.355 5.355 12 C -0.026 4.026 13 C -0.181 4.181 14 C -0.015 4.015 15 C -0.157 4.157 16 C -0.168 4.168 17 C -0.065 4.065 18 N -0.250 5.250 19 C -0.006 4.006 20 C -0.188 4.188 21 C -0.233 4.233 22 C -0.114 4.114 23 O -0.091 6.091 24 C -0.109 4.109 25 C 0.303 3.697 26 O -0.456 6.456 27 H 0.073 0.927 28 H 0.020 0.980 29 H -0.012 1.012 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.182 0.818 45 H 0.249 0.751 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.330 -27.166 -2.042 27.245 hybrid contribution -0.446 1.489 -0.145 1.561 sum -0.116 -25.678 -2.187 25.771 Atomic orbital electron populations 1.70114 1.08002 1.27936 1.51229 1.26030 0.95797 1.03624 0.94353 0.85363 0.78470 0.77866 0.78848 1.18903 1.20915 1.18850 1.21554 0.93744 0.91834 1.51251 0.91567 1.19199 0.94545 0.93193 0.94337 1.21338 0.93813 0.81159 1.01475 1.48648 1.55989 1.22669 1.08171 1.22347 1.01559 0.91790 0.86872 1.23539 1.05983 0.96305 0.92292 1.21722 0.95445 0.90127 0.94248 1.22713 0.91920 1.01119 0.99989 1.22772 1.00590 0.97150 0.96266 1.22991 0.88004 0.96060 0.99464 1.63043 1.25737 1.07027 1.29222 1.20781 0.98576 0.88636 0.92638 1.20450 0.95481 0.97958 1.04890 1.21971 1.02424 0.95347 1.03512 1.24695 0.84099 0.99888 1.02720 1.84077 1.38326 1.29105 1.57570 1.24176 1.00903 0.88904 0.96873 1.21227 0.77964 0.86568 0.83969 1.90611 1.58330 1.73247 1.23449 0.92671 0.98022 1.01203 0.93375 0.88963 0.88092 0.91245 0.86550 0.85525 0.93502 0.86302 0.93818 0.87603 0.90393 0.91430 0.90639 0.89468 0.81837 0.75138 0.77773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.54 13.29 21.45 0.28 -58.26 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.84 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 9 C 0.03 1.42 5.30 29.85 0.16 1.57 16 10 C 0.14 6.42 5.88 86.38 0.51 6.93 16 11 N -0.62 -23.44 2.94 -818.11 -2.41 -25.84 16 12 C 0.10 2.42 7.36 86.87 0.64 3.06 16 13 C -0.14 -2.58 5.20 31.45 0.16 -2.42 16 14 C 0.08 2.10 0.99 3.28 0.00 2.10 16 15 C -0.12 -2.90 6.07 31.59 0.19 -2.71 16 16 C -0.13 -3.00 7.08 32.06 0.23 -2.78 16 17 C 0.06 1.28 5.62 86.76 0.49 1.77 16 18 N -0.53 -13.04 4.90 -846.31 -4.14 -17.18 16 19 C 0.12 2.15 3.96 85.56 0.34 2.49 16 20 C -0.19 -3.49 5.09 -19.95 -0.10 -3.59 16 21 C -0.21 -3.20 10.14 22.19 0.23 -2.98 16 22 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 23 O -0.19 -3.86 10.65 -2.53 -0.03 -3.89 16 24 C -0.04 -0.81 12.01 66.97 0.80 0.00 16 25 C 0.52 20.74 6.86 87.62 0.60 21.34 16 26 O -0.58 -29.74 17.62 -3.03 -0.05 -29.79 16 27 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 30 H 0.05 2.33 7.95 -2.39 -0.02 2.31 16 31 H 0.09 3.56 8.14 -2.39 -0.02 3.55 16 32 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.12 1.69 4.80 -2.39 -0.01 1.67 16 35 H 0.13 1.40 7.44 -2.39 -0.02 1.38 16 36 H 0.05 1.48 7.82 -2.39 -0.02 1.46 16 37 H 0.12 1.92 7.45 -2.38 -0.02 1.90 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.14 7.49 -2.39 -0.02 1.13 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 0.97 7.36 -2.39 -0.02 0.96 16 43 H 0.09 1.55 6.39 -2.39 -0.02 1.54 16 44 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -83.57 370.52 2.40 -81.17 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.97 Total: 12.98 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.75 Total: -6.47 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -6.27 Total: -101.28 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.08 Total: -33.68 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -83.57 2.40 -81.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272983853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.269 kcal (2) G-P(sol) polarization free energy of solvation -83.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds