Wall clock time and date at job start Tue Mar 31 2020 12:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47089 * 299.99545 * 3 2 1 6 6 H 1.48500 * 109.47339 * 59.99703 * 3 2 1 7 7 C 1.37873 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.33343 * 117.29066 * 270.00435 * 11 10 9 13 13 O 1.21288 * 118.80137 * 359.77038 * 12 11 10 14 14 C 1.50341 * 122.40015 * 179.77070 * 12 11 10 15 15 C 1.52892 * 109.30811 * 338.35034 * 14 12 11 16 16 C 1.53123 * 109.32655 * 52.85154 * 15 14 12 17 17 H 1.08998 * 111.91913 * 59.70132 * 16 15 14 18 18 C 1.44636 * 117.28510 * 90.00512 * 11 10 9 19 19 H 1.08991 * 110.91738 * 45.95520 * 18 11 10 20 20 C 1.54884 * 110.63061 * 283.06392 * 18 11 10 21 21 C 1.54526 * 102.76225 * 203.23659 * 20 18 11 22 22 N 1.48161 * 106.80201 * 23.05018 * 21 20 18 23 23 C 1.46900 * 110.98590 * 123.11995 * 22 21 20 24 24 C 1.50696 * 109.46891 * 69.37113 * 23 22 21 25 25 C 1.41386 * 126.58045 * 90.00091 * 24 23 22 26 26 C 1.34518 * 106.84157 * 179.97438 * 25 24 23 27 27 O 1.34301 * 108.41935 * 359.97438 * 26 25 24 28 28 C 1.34309 * 109.47892 * 359.77588 * 27 26 25 29 29 H 0.97003 * 119.99486 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46756 * 60.00069 * 9 7 2 31 31 H 1.08992 * 109.47093 * 299.99837 * 9 7 2 32 32 H 1.09005 * 109.46907 * 60.00556 * 10 9 7 33 33 H 1.08992 * 109.47305 * 300.00101 * 10 9 7 34 34 H 1.09003 * 109.50132 * 218.39595 * 14 12 11 35 35 H 1.09011 * 109.52553 * 98.31588 * 14 12 11 36 36 H 1.08993 * 109.49518 * 292.89066 * 15 14 12 37 37 H 1.09004 * 109.51751 * 172.81672 * 15 14 12 38 38 H 1.09002 * 110.78765 * 321.60736 * 20 18 11 39 39 H 1.09002 * 110.78551 * 84.86801 * 20 18 11 40 40 H 1.09001 * 109.91515 * 142.45433 * 21 20 18 41 41 H 1.08998 * 109.91748 * 263.74656 * 21 20 18 42 42 H 1.08998 * 109.47087 * 189.36800 * 23 22 21 43 43 H 1.08994 * 109.46926 * 309.37534 * 23 22 21 44 44 H 1.07999 * 126.57665 * 359.92633 * 25 24 23 45 45 H 1.08000 * 125.78882 * 179.97438 * 26 25 24 46 46 H 1.07998 * 125.79093 * 180.24154 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.2073 -5.4599 1.1864 13 8 1.5496 -4.8758 2.1927 14 6 0.4542 -6.7541 1.3210 15 6 -0.3216 -7.0239 0.0314 16 6 0.6345 -6.9424 -1.1618 17 1 1.4434 -7.6689 -1.0854 18 6 1.1808 -5.5055 -1.2840 19 1 2.0397 -5.4813 -1.9545 20 6 -0.0216 -4.7641 -1.9191 21 6 -0.5951 -5.8167 -2.8944 22 7 -0.1559 -7.1426 -2.4002 23 6 -1.3079 -8.0201 -2.1535 24 6 -1.9416 -8.3984 -3.4673 25 6 -1.6180 -9.5184 -4.2674 26 6 -2.4221 -9.4730 -5.3448 27 8 -3.2115 -8.3915 -5.2400 28 6 -2.9281 -7.7390 -4.1008 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 2.8719 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 -0.2420 -6.6848 2.1568 35 1 1.1572 -7.5679 1.4996 36 1 -1.1092 -6.2790 -0.0818 37 1 -0.7653 -8.0187 0.0747 38 1 -0.7574 -4.4988 -1.1599 39 1 0.3117 -3.8777 -2.4589 40 1 -1.6837 -5.7617 -2.9018 41 1 -0.2051 -5.6448 -3.8976 42 1 -0.9746 -8.9209 -1.6381 43 1 -2.0374 -7.4967 -1.5356 44 1 -0.8684 -10.2662 -4.0546 45 1 -2.4314 -10.1855 -6.1564 46 1 -3.4089 -6.8364 -3.7536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272983916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:52 Heat of formation + Delta-G solvation = -6.223866 kcal Electronic energy + Delta-G solvation = -27467.192020 eV Core-core repulsion = 23744.576502 eV Total energy + Delta-G solvation = -3722.615518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72091 -40.93410 -38.53443 -35.53282 -34.16641 -33.23396 -32.78881 -31.05944 -29.69796 -29.16878 -27.96973 -25.75329 -25.02630 -23.60602 -22.01867 -21.75602 -21.19180 -20.63646 -19.96696 -17.96312 -17.51600 -16.72718 -16.42879 -16.25960 -16.03302 -15.59265 -15.14388 -14.85110 -14.64833 -14.43523 -13.99154 -13.78119 -13.43439 -13.33689 -12.96084 -12.76546 -12.57031 -12.36600 -12.19372 -11.98534 -11.80522 -11.73812 -11.48605 -11.29294 -11.10644 -10.94021 -10.81914 -10.65647 -10.50249 -9.89632 -9.81781 -9.80606 -9.31742 -8.98821 -8.75862 -8.42117 -8.33431 -8.04511 -6.00188 -4.02204 1.58964 2.38311 2.97115 3.07617 3.31791 3.38512 3.41497 3.45784 3.95230 4.42433 4.47364 4.48803 4.60457 4.70496 4.77066 4.81836 4.87828 5.11271 5.17228 5.25536 5.30120 5.33715 5.36977 5.43168 5.44695 5.53105 5.70892 5.72621 5.80184 5.81739 5.89534 5.97223 6.05597 6.18423 6.26753 6.30887 6.36424 6.58960 6.74735 6.82256 6.90187 6.94372 6.96047 7.66176 7.76071 8.01072 8.07363 8.38838 8.67920 9.04532 9.61344 11.11268 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.003286 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.851732 B = 8518.283620 C = 9730.002631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.108 3.892 11 N -0.589 5.589 12 C 0.510 3.490 13 O -0.547 6.547 14 C -0.132 4.132 15 C -0.149 4.149 16 C 0.067 3.933 17 H 0.103 0.897 18 C 0.146 3.854 19 H 0.094 0.906 20 C -0.153 4.153 21 C 0.044 3.956 22 N -0.516 5.516 23 C 0.117 3.883 24 C -0.168 4.168 25 C -0.194 4.194 26 C -0.050 4.050 27 O -0.179 6.179 28 C -0.036 4.036 29 H 0.259 0.741 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.146 0.854 45 H 0.199 0.801 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -21.520 -8.949 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.024 4.024 10 C -0.013 4.013 11 N -0.320 5.320 12 C 0.298 3.702 13 O -0.425 6.425 14 C -0.173 4.173 15 C -0.187 4.187 16 C -0.041 4.041 17 H 0.121 0.879 18 C 0.040 3.960 19 H 0.112 0.888 20 C -0.192 4.192 21 C -0.084 4.084 22 N -0.240 5.240 23 C -0.010 4.010 24 C -0.170 4.170 25 C -0.214 4.214 26 C -0.117 4.117 27 O -0.074 6.074 28 C -0.105 4.105 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.164 0.836 45 H 0.216 0.784 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.908 -21.291 -9.015 23.636 hybrid contribution -0.037 1.313 0.594 1.441 sum -4.945 -19.978 -8.421 22.238 Atomic orbital electron populations 1.69981 1.06051 1.26427 1.50865 1.24982 0.94838 0.99214 0.95259 0.86526 0.80148 0.83741 0.77528 1.19691 1.21053 1.21023 1.21153 0.93057 0.90806 1.50640 0.92581 1.19412 0.94376 0.90901 0.97684 1.21956 0.95784 0.82106 1.01504 1.47084 1.56217 1.24344 1.04328 1.19970 0.80218 0.86846 0.83168 1.90739 1.54065 1.62184 1.35465 1.21590 1.00139 0.96268 0.99262 1.22294 0.99093 1.02830 0.94519 1.22872 0.96146 0.96871 0.88246 0.87944 1.21528 0.97929 0.91351 0.85219 0.88775 1.23340 0.97899 0.98861 0.99122 1.23014 0.98909 0.87124 0.99367 1.64014 1.20457 1.12169 1.27324 1.20598 0.91402 0.97295 0.91747 1.20320 0.99481 0.97579 0.99608 1.21692 1.03038 1.00802 0.95834 1.23986 0.94913 0.91145 1.01661 1.84069 1.52383 1.33199 1.37758 1.23916 1.00871 0.99437 0.86268 0.93117 0.96063 0.96276 0.90665 0.92024 0.88462 0.88716 0.90858 0.90313 0.90547 0.89264 0.92658 0.90144 0.89751 0.93235 0.83580 0.78400 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.01 0.37 5.07 -27.88 -0.14 0.22 16 10 C 0.11 2.29 5.06 -4.04 -0.02 2.27 16 11 N -0.59 -10.38 2.51 -166.16 -0.42 -10.80 16 12 C 0.51 9.28 7.47 -11.80 -0.09 9.19 16 13 O -0.55 -12.58 16.20 5.55 0.09 -12.49 16 14 C -0.13 -1.66 6.08 -28.11 -0.17 -1.83 16 15 C -0.15 -1.58 3.87 -26.72 -0.10 -1.68 16 16 C 0.07 0.74 3.49 -66.25 -0.23 0.51 16 17 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 18 C 0.15 2.04 3.17 -67.30 -0.21 1.82 16 19 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 20 C -0.15 -2.19 4.67 -24.94 -0.12 -2.31 16 21 C 0.04 0.50 6.32 -2.33 -0.01 0.48 16 22 N -0.52 -5.47 5.15 -224.09 -1.15 -6.63 16 23 C 0.12 1.08 3.87 -4.98 -0.02 1.06 16 24 C -0.17 -1.61 5.27 -104.74 -0.55 -2.17 16 25 C -0.19 -1.73 10.87 -39.70 -0.43 -2.16 16 26 C -0.05 -0.40 12.09 29.42 0.36 -0.05 16 27 O -0.18 -1.77 10.65 5.70 0.06 -1.71 16 28 C -0.04 -0.34 11.11 29.42 0.33 -0.01 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.56 6.13 -51.93 -0.32 0.24 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.74 7.13 -51.93 -0.37 1.37 16 33 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.07 0.88 6.53 -51.93 -0.34 0.54 16 37 H 0.08 0.65 6.37 -51.93 -0.33 0.32 16 38 H 0.08 1.25 7.38 -51.93 -0.38 0.86 16 39 H 0.09 1.43 7.41 -51.93 -0.38 1.04 16 40 H 0.05 0.58 6.23 -51.93 -0.32 0.26 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.70 7.30 -51.93 -0.38 0.32 16 43 H 0.05 0.45 6.74 -51.93 -0.35 0.10 16 44 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.20 1.43 7.61 -52.49 -0.40 1.03 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -34.14 359.31 -9.03 -43.17 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.91 Total: 0.55 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.83 Total: -8.13 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.84 Total: -43.68 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.15 Total: -14.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.14 -9.03 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272983916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.949 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds