Wall clock time and date at job start Tue Mar 31 2020 12:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47089 * 299.99545 * 3 2 1 6 6 H 1.48500 * 109.47339 * 59.99703 * 3 2 1 7 7 C 1.37873 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.33343 * 117.29066 * 270.00435 * 11 10 9 13 13 O 1.21288 * 118.80137 * 359.77038 * 12 11 10 14 14 C 1.50341 * 122.40015 * 179.77070 * 12 11 10 15 15 C 1.52892 * 109.30811 * 338.35034 * 14 12 11 16 16 C 1.53123 * 109.32655 * 52.85154 * 15 14 12 17 17 H 1.08998 * 111.91913 * 59.70132 * 16 15 14 18 18 C 1.44636 * 117.28510 * 90.00512 * 11 10 9 19 19 H 1.08991 * 110.91738 * 45.95520 * 18 11 10 20 20 C 1.54884 * 110.63061 * 283.06392 * 18 11 10 21 21 C 1.54526 * 102.76225 * 203.23659 * 20 18 11 22 22 N 1.48161 * 106.80201 * 23.05018 * 21 20 18 23 23 C 1.46900 * 110.98590 * 123.11995 * 22 21 20 24 24 C 1.50696 * 109.46891 * 69.37113 * 23 22 21 25 25 C 1.41386 * 126.58045 * 90.00091 * 24 23 22 26 26 C 1.34518 * 106.84157 * 179.97438 * 25 24 23 27 27 O 1.34301 * 108.41935 * 359.97438 * 26 25 24 28 28 C 1.34309 * 109.47892 * 359.77588 * 27 26 25 29 29 H 0.97003 * 119.99486 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46756 * 60.00069 * 9 7 2 31 31 H 1.08992 * 109.47093 * 299.99837 * 9 7 2 32 32 H 1.09005 * 109.46907 * 60.00556 * 10 9 7 33 33 H 1.08992 * 109.47305 * 300.00101 * 10 9 7 34 34 H 1.09003 * 109.50132 * 218.39595 * 14 12 11 35 35 H 1.09011 * 109.52553 * 98.31588 * 14 12 11 36 36 H 1.08993 * 109.49518 * 292.89066 * 15 14 12 37 37 H 1.09004 * 109.51751 * 172.81672 * 15 14 12 38 38 H 1.09002 * 110.78765 * 321.60736 * 20 18 11 39 39 H 1.09002 * 110.78551 * 84.86801 * 20 18 11 40 40 H 1.09001 * 109.91515 * 142.45433 * 21 20 18 41 41 H 1.08998 * 109.91748 * 263.74656 * 21 20 18 42 42 H 1.08998 * 109.47087 * 189.36800 * 23 22 21 43 43 H 1.08994 * 109.46926 * 309.37534 * 23 22 21 44 44 H 1.07999 * 126.57665 * 359.92633 * 25 24 23 45 45 H 1.08000 * 125.78882 * 179.97438 * 26 25 24 46 46 H 1.07998 * 125.79093 * 180.24154 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.2073 -5.4599 1.1864 13 8 1.5496 -4.8758 2.1927 14 6 0.4542 -6.7541 1.3210 15 6 -0.3216 -7.0239 0.0314 16 6 0.6345 -6.9424 -1.1618 17 1 1.4434 -7.6689 -1.0854 18 6 1.1808 -5.5055 -1.2840 19 1 2.0397 -5.4813 -1.9545 20 6 -0.0216 -4.7641 -1.9191 21 6 -0.5951 -5.8167 -2.8944 22 7 -0.1559 -7.1426 -2.4002 23 6 -1.3079 -8.0201 -2.1535 24 6 -1.9416 -8.3984 -3.4673 25 6 -1.6180 -9.5184 -4.2674 26 6 -2.4221 -9.4730 -5.3448 27 8 -3.2115 -8.3915 -5.2400 28 6 -2.9281 -7.7390 -4.1008 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 2.8719 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 -0.2420 -6.6848 2.1568 35 1 1.1572 -7.5679 1.4996 36 1 -1.1092 -6.2790 -0.0818 37 1 -0.7653 -8.0187 0.0747 38 1 -0.7574 -4.4988 -1.1599 39 1 0.3117 -3.8777 -2.4589 40 1 -1.6837 -5.7617 -2.9018 41 1 -0.2051 -5.6448 -3.8976 42 1 -0.9746 -8.9209 -1.6381 43 1 -2.0374 -7.4967 -1.5356 44 1 -0.8684 -10.2662 -4.0546 45 1 -2.4314 -10.1855 -6.1564 46 1 -3.4089 -6.8364 -3.7536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272983916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:51 Heat of formation + Delta-G solvation = -29.222128 kcal Electronic energy + Delta-G solvation = -27468.189299 eV Core-core repulsion = 23744.576502 eV Total energy + Delta-G solvation = -3723.612798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.37224 -42.13450 -39.80111 -36.98232 -35.52784 -34.53100 -34.21128 -32.20043 -31.10758 -30.23025 -29.02752 -26.95060 -26.56281 -24.82326 -23.55656 -22.60348 -22.11161 -22.00889 -20.75733 -19.18929 -18.55483 -18.21970 -17.89353 -17.42348 -17.07001 -16.67401 -16.56951 -16.13662 -15.83812 -15.65326 -15.04828 -14.82002 -14.73430 -14.40024 -14.33434 -14.17979 -13.77908 -13.54876 -13.42279 -13.14237 -13.00829 -12.90277 -12.85680 -12.65492 -12.53063 -12.44633 -12.15225 -11.98250 -11.77319 -11.73298 -11.52995 -11.36241 -10.64129 -10.58393 -10.49872 -9.63376 -9.42890 -9.23641 -8.23831 -6.35191 0.94723 1.36772 1.38327 1.51256 1.63954 1.72661 2.08989 2.39211 2.39890 3.02569 3.09722 3.40715 3.52343 3.68330 3.81184 3.99661 4.02457 4.12190 4.15287 4.20551 4.26279 4.33300 4.39624 4.40822 4.63954 4.68970 4.70954 4.76085 4.79203 4.84105 4.86118 4.93279 4.94514 5.01542 5.12612 5.22432 5.28629 5.33887 5.38158 5.47856 5.61270 5.69087 5.81225 5.86570 6.04347 6.17975 6.30795 6.61735 6.80068 7.23440 7.33741 8.88227 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.003286 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.851732 B = 8518.283620 C = 9730.002631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.122 3.878 11 N -0.586 5.586 12 C 0.498 3.502 13 O -0.606 6.606 14 C -0.120 4.120 15 C -0.142 4.142 16 C 0.079 3.921 17 H 0.126 0.874 18 C 0.137 3.863 19 H 0.104 0.896 20 C -0.150 4.150 21 C 0.055 3.945 22 N -0.512 5.512 23 C 0.117 3.883 24 C -0.179 4.179 25 C -0.209 4.209 26 C -0.050 4.050 27 O -0.195 6.195 28 C -0.051 4.051 29 H 0.263 0.737 30 H 0.012 0.988 31 H -0.031 1.031 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.160 0.840 45 H 0.230 0.770 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 -23.693 -10.196 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.001 4.001 11 N -0.315 5.315 12 C 0.288 3.712 13 O -0.488 6.488 14 C -0.160 4.160 15 C -0.180 4.180 16 C -0.030 4.030 17 H 0.144 0.856 18 C 0.032 3.968 19 H 0.122 0.878 20 C -0.190 4.190 21 C -0.072 4.072 22 N -0.235 5.235 23 C -0.010 4.010 24 C -0.181 4.181 25 C -0.228 4.228 26 C -0.117 4.117 27 O -0.090 6.090 28 C -0.119 4.119 29 H 0.072 0.928 30 H 0.030 0.970 31 H -0.013 1.013 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.178 0.822 45 H 0.246 0.754 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.469 -23.503 -10.300 26.047 hybrid contribution -0.223 1.982 0.956 2.211 sum -4.692 -21.522 -9.344 23.927 Atomic orbital electron populations 1.70115 1.07816 1.27668 1.51504 1.25961 0.95786 1.03354 0.94538 0.85371 0.79123 0.78582 0.77807 1.18482 1.19807 1.20769 1.21595 0.93570 0.92132 1.50824 0.92091 1.19186 0.94397 0.92607 0.94681 1.21497 0.94703 0.82638 1.01278 1.47094 1.55487 1.22935 1.05996 1.21136 0.79503 0.88355 0.82181 1.90706 1.56437 1.64291 1.37372 1.21604 1.00330 0.93496 1.00565 1.22302 0.98254 1.04365 0.93087 1.22880 0.96728 0.94735 0.88619 0.85600 1.21825 0.98168 0.93429 0.83381 0.87818 1.23198 0.97694 0.99110 0.98952 1.22891 0.99282 0.86708 0.98363 1.64089 1.21184 1.11361 1.26900 1.20677 0.90855 0.97551 0.91923 1.20467 0.99680 0.98028 0.99893 1.21958 1.03739 1.01078 0.96056 1.24662 0.93942 0.90775 1.02299 1.84071 1.53025 1.33906 1.38045 1.24232 1.01292 1.00016 0.86349 0.92807 0.96971 1.01261 0.92869 0.90020 0.88030 0.85413 0.92634 0.86504 0.93223 0.91741 0.91747 0.89994 0.87890 0.92975 0.82240 0.75372 0.77497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.61 5.07 29.85 0.15 1.76 16 10 C 0.12 5.41 5.06 86.38 0.44 5.85 16 11 N -0.59 -21.09 2.51 -798.78 -2.01 -23.10 16 12 C 0.50 18.38 7.47 87.77 0.66 19.04 16 13 O -0.61 -29.19 16.20 -3.05 -0.05 -29.24 16 14 C -0.12 -2.78 6.08 29.70 0.18 -2.60 16 15 C -0.14 -2.61 3.87 30.60 0.12 -2.49 16 16 C 0.08 1.52 3.49 45.10 0.16 1.67 16 17 H 0.13 1.98 8.14 -2.39 -0.02 1.97 16 18 C 0.14 3.73 3.17 46.39 0.15 3.88 16 19 H 0.10 2.67 8.04 -2.39 -0.02 2.65 16 20 C -0.15 -4.42 4.67 31.76 0.15 -4.27 16 21 C 0.06 1.21 6.32 86.58 0.55 1.76 16 22 N -0.51 -9.47 5.15 -862.88 -4.45 -13.92 16 23 C 0.12 1.78 3.87 85.56 0.33 2.11 16 24 C -0.18 -3.00 5.27 -19.94 -0.11 -3.10 16 25 C -0.21 -3.15 10.87 22.19 0.24 -2.91 16 26 C -0.05 -0.69 12.09 66.97 0.81 0.12 16 27 O -0.19 -3.55 10.65 -2.52 -0.03 -3.57 16 28 C -0.05 -0.87 11.11 66.97 0.74 -0.12 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.01 0.67 6.13 -2.38 -0.01 0.66 16 31 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 32 H 0.05 2.59 7.13 -2.38 -0.02 2.58 16 33 H 0.08 3.26 7.92 -2.39 -0.02 3.24 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.05 1.26 6.53 -2.39 -0.02 1.24 16 37 H 0.12 1.37 6.37 -2.39 -0.02 1.36 16 38 H 0.05 1.71 7.38 -2.39 -0.02 1.70 16 39 H 0.06 2.18 7.41 -2.39 -0.02 2.17 16 40 H 0.06 1.30 6.23 -2.39 -0.01 1.28 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.10 1.23 7.30 -2.39 -0.02 1.21 16 43 H 0.05 0.79 6.74 -2.39 -0.02 0.77 16 44 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.21 2.79 7.61 -2.91 -0.02 2.77 16 Total: -1.00 -78.48 359.31 2.02 -76.47 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.98 Total: 14.09 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.26 Total: -10.51 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -6.17 Total: -94.74 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.08 Total: -32.82 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.48 2.02 -76.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272983916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.243 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds